#NUDT15
This approach was also applied to a dataset of NUDT15 sequence variants published by Suiter et al. to see how generalizable the pipeline was. NUDT15 is an enzyme in humans important for processing thiopurine drugs, and loss-of-function variations can cause thiopurine cytotoxicity. (8/11)
January 29, 2025 at 10:28 PM
For a little distraction I just stumbled upon a new (to me) causal gene.

The trait is "Thiopurine-induced alopecia in inflammatory bowel disease"

The closest genes, in alphabetical order, are:

ITM2B LPAR6 MED4 NUDT15 RB1 RCBTB2 SUCLA2

Left as an exercise for the reader.
Who is that causal gene?
February 5, 2025 at 11:49 PM
1/ The toolkit behind the discovery is out.
In @natcomms.nature.com, we report the selective NUDT5 degrader toolkit that helped uncover NUDT5’s hidden biology - and show antagonistic roles for NUDT5 and NUDT15 in 6-TG response. doi.org/10.1038/s414...
Targeted Protein Degradation of NUDT5 Dissociates Catalytic Inhibition from Protein Loss in 6-Thioguanine Response - Nature Communications
Thiopurines are widely used drugs whose activity depends on cellular metabolism. Here, the authors develop chemical tools to remove NUDT5 and show that protein loss, but not inhibition, alters drug re...
doi.org
August 12, 2026 at 2:03 PM
NUDT15 encodes an enzyme that breaks down thiopurine metabolites! I believe genetic testing is generally recommended prior to thiopurine therapy, but I am not familiar with drug induced alopecia
February 6, 2025 at 12:18 AM
4/ In 6-thioguanine response, NUDT5 protein loss protects cells from drug toxicity, while NUDT15 inhibition sensitises cells.
That points to distinct, antagonistic roles for two NUDIX proteins in thiopurine metabolism.
August 12, 2026 at 2:05 PM
Check out this brief report from #CTSjournal: bit.ly/43xd9rt
June 11, 2025 at 1:02 PM
ESM-2 fine-tuned on this data was able to successfully correlate NUDT15 variation with changes in functionality, and extended predictions on enzyme functionality to sequence variants not generated in the original assay, such as uncharacterized in-frame indels found in some individuals. (9/11)
January 29, 2025 at 10:29 PM
Deep mutational scanning of CYP2C9, CYP2C19, and NUDT15 shows that pharmacogene variant interpretation requires assay-specific functional data https://academic.oup.com/g3journal/advance-article/doi/10.1093/g3journal/jkag248/8776100
August 31, 2026 at 1:20 PM
The CPIC Pharmacogene Curation Expert Panel re-evaluated the star alleles of TPMT and NUDT15, two genes central to the metabolism of thiopurines used in cancer and autoimmune disease.

#pharmacogenomics #PGx #genomics
Clinical Functional Assignment of TPMT and NUDT15 Alleles by the Clinical Pharmacogenetics Implementation Consortium Pha
Thiopurine toxicity and dose adjustment · Clin Pharmacol Ther 2026
www.genox-veille.fr
August 17, 2026 at 10:47 AM
TPMT 與 NUDT15 的族群方向
TPMT 失能等位基因主要好發於歐洲人與非洲人(歐洲人帶因率約 10%)。
NUDT15 變異主要好發於亞洲人,是東亞族群 thiopurine 骨髓毒性的主因。
記法:TPMT 走西方,NUDT15 守東亞 —— 寫反就是錯的。
#血液專科
https://hema-2026.hsiehting.com/q/113-074
August 3, 2026 at 2:03 PM
TPMT 與 NUDT15 的族群分布
TPMT 變異多見於歐洲人與非洲人(異型合子約 10%)。
NUDT15 變異多見於亞洲人,尤其華人與日本人,是東亞族群 thiopurine 骨髓毒性的主因。
記法:TPMT 走西方,NUDT15 守東亞。台日已把 NUDT15 檢測納入 ALL 標準流程。
#血液專科
https://hema-2026.hsiehting.com/q/114-098
August 3, 2026 at 10:48 AM
6-TGN 濃度是一體兩面
太低沒效、太高中毒 —— 骨髓抑制的本質就是 6-TGN 在骨髓過量。
TPMT 把 6-MP 甲基化成無活性的 6-MMP,是分流解毒路徑;TPMT 或 NUDT15 活性低,更多藥物走向 6-TGN。
骨髓抑制與肝毒性的嚴重度與這兩個基因型直接相關。胰臟炎則不是 6-MP 的常見副作用。
#血液專科
https://hema-2026.hsiehting.com/q/113-074
August 3, 2026 at 2:04 PM
Feed: "The Journal of Clinical Investigation -- New Articles"
By: Leo Kager, Kaan Boztug
The NUDIX hydrolase NUDT5 influences purine nucleotide metabolism and thiopurine pharmacology
Purine nucleotides are critical for nucleic acid synthesis, signaling, and cellular metabolism. Thiopurines (TPs), including 6-mercaptopurine and 6-thioguanine, are cornerstone agents for the treatment of acute lymphoblastic leukemia (ALL). TP efficacy and cytotoxicity depend on the metabolism and intracellular activation of TPs, a process influenced by pharmacogenes such as thiopurine-S methyltransferase (TPMT) and NUDIX (nucleoside diphosphates linked to moiety-X) hydrolase 15 (NUDT15). In this issue of the JCI, Maillard et al. identified NUDT5 as a determinant of TP pharmacology. They demonstrated that loss of NUDT5 conferred TP resistance by impairing drug activation and DNA damage responses. Metabolomics studies by Maillard and others revealed that NUDT5 may regulate the balance between the de novo purine synthesis and salvage pathways. Clinically, NUDT5 expression variants were associated with altered TP tolerance. These findings position NUDT5 as a key modulator of nucleotide metabolism and TP efficacy, with potential implications for pharmacogenomics-guided therapy optimization in ALL.
www.jci.org
July 18, 2025 at 2:01 AM
Feed: "The Journal of Clinical Investigation -- New Articles"
By: Maud Maillard, Rina Nishii, Hieu S. Vu, Kashi R. Bhattarai, Wenjian Yang, Jing Li, Ute Hofmann, Daniel Savic, Smita Bhatia, Matthias Schwab, Min Ni, Jun J. Yang
The NUDIX hydrolase NUDT5 regulates thiopurine metabolism and cytotoxicity
Thiopurines are anticancer agents used for the treatment of leukemia and autoimmune diseases. These purine analogs are characterized by a narrow therapeutic index because of the risk of myelosuppression. With the discovery of NUDIX hydrolase 15 (NUDT15) as a major modulator of thiopurine metabolism and toxicity, we sought to comprehensively examine all members of the NUDIX hydrolase family for their effect on the pharmacologic effects of thiopurine. By performing a NUDIX-targeted CRISPR/Cas9 screen in leukemia cells, we identified NUDT5, whose depletion led to drastic thiopurine resistance. NUDT5 deficiency resulted in a nearly complete depletion of active metabolites of thiopurine and the loss of thioguanine incorporation into DNA. Mechanistically, NUDT5 deletion resulted in substantial alteration in purine nucleotide biosynthesis, as determined by steady-state metabolomics profiling. Stable isotope tracing demonstrated that the loss of NUDT5 was linked to a marked suppression of the purine salvage pathway but with minimal effects on purine de novo synthesis. Finally, we comprehensively identified germline genetic variants in NUDT5 associated with thiopurine-induced myelosuppression in 582 children with acute lymphoblastic leukemia. Collectively, these results pointed to NUDT5 as a key regulator of the thiopurine response primarily through its effects on purine homeostasis, highlighting its potential to inform individualized thiopurine therapy.
www.jci.org
July 18, 2025 at 2:01 AM
PGx testing in oncology: In the PREPARE trial (563 patients), actionable genotypes led to a 90% drop in toxic effects, fewer hospitalizations, and lower management costs without reducing treatment intensity or 3-year survival. Time to act!
#Pharmacogenomics #Oncology #DPYD #UGT1A1 #TPMT #NUDT15
Pretherapeutic DPYD and UGT1A1 Testing in Gastrointestinal Cancer
This secondary analysis of a randomized clinical trial examines the use of pharmacogenetic-informed prescribing of fluoropyrimidines and/or irinotecan in patients with gastrointestinal cancer.
jamanetwork.com
December 15, 2024 at 7:50 PM
This was shown in principle with mutants of human MTH1, NUDT15, PARP1, OGG1, and DHFR. We also show that the pool of compatible mutations can conceivably be expanded by structural homology – exemplified by transfer of a PARP1 destabilizing mutation to PARP2. 4/x
December 11, 2024 at 12:04 AM
A New Blueprint for Safer Thiopurine Therapy

A New Blueprint for Safer Thiopurine Therapy The Clinical Pharmacogenetics Implementation Consortium (CPIC) has released its 2025 update to the guideline for dosing thiopurine drugs—including azathioprine, mercaptopurine, and thioguanine—based on…
A New Blueprint for Safer Thiopurine Therapy
A New Blueprint for Safer Thiopurine Therapy The Clinical Pharmacogenetics Implementation Consortium (CPIC) has released its 2025 update to the guideline for dosing thiopurine drugs—including azathioprine, mercaptopurine, and thioguanine—based on genetic testing. The guideline details how specific genetic variants in the TPMT and NUDT15 enzymes, which are critical for metabolizing these drugs, can predict a patient's risk of severe adverse effects like myelosuppression.
blog.sciencebriefing.com
February 3, 2026 at 11:00 AM
A New Guideline for Safer Emergency Prescribing

A New Guideline for Safer Emergency Prescribing The Clinical Pharmacogenetics Implementation Consortium (CPIC) has released a crucial 2025 update to its guideline for thiopurine dosing. These drugs, including azathioprine, are used in acute and…
A New Guideline for Safer Emergency Prescribing
A New Guideline for Safer Emergency Prescribing The Clinical Pharmacogenetics Implementation Consortium (CPIC) has released a crucial 2025 update to its guideline for thiopurine dosing. These drugs, including azathioprine, are used in acute and chronic inflammatory conditions. The guideline provides specific recommendations for adjusting starting doses based on genetic testing for two key enzymes, TPMT and NUDT15. Individuals with genetic variants that reduce or eliminate the function of these enzymes are at a significantly higher risk of severe, life-threatening myelosuppression when given standard doses.
blog.sciencebriefing.com
February 3, 2026 at 9:57 AM
The Genetic Key to Safer Pediatric Immunosuppression

The Genetic Key to Safer Pediatric Immunosuppression The Clinical Pharmacogenetics Implementation Consortium (CPIC) has released a critical 2025 update to its guideline for thiopurine dosing. These immunosuppressant drugs, including…
The Genetic Key to Safer Pediatric Immunosuppression
The Genetic Key to Safer Pediatric Immunosuppression The Clinical Pharmacogenetics Implementation Consortium (CPIC) has released a critical 2025 update to its guideline for thiopurine dosing. These immunosuppressant drugs, including mercaptopurine, thioguanine, and azathioprine, are used to treat conditions like childhood leukemia and autoimmune disorders. The guideline provides specific recommendations for adjusting starting doses based on a patient's genetic profile for the TPMT and NUDT15 enzymes.
blog.sciencebriefing.com
February 3, 2026 at 8:38 AM
Updated genetic roadmap for safer thiopurine dosing in autoimmune care

Updated genetic roadmap for safer thiopurine dosing in autoimmune care The Clinical Pharmacogenetics Implementation Consortium (CPIC) has released its 2025 update on thiopurine dosing, solidifying the role of genetic testing…
Updated genetic roadmap for safer thiopurine dosing in autoimmune care
Updated genetic roadmap for safer thiopurine dosing in autoimmune care The Clinical Pharmacogenetics Implementation Consortium (CPIC) has released its 2025 update on thiopurine dosing, solidifying the role of genetic testing for TPMT and NUDT15 enzymes. This guideline provides specific recommendations for adjusting starting doses of drugs like azathioprine and mercaptopurine based on a patient's genotype to mitigate the risk of severe adverse effects, including life-threatening myelosuppression.
blog.sciencebriefing.com
February 3, 2026 at 8:22 AM
A Pharmacogenetic Roadmap for Safer Thiopurine Dosing

A Pharmacogenetic Roadmap for Safer Thiopurine Dosing The Clinical Pharmacogenetics Implementation Consortium (CPIC) has issued a crucial 2025 update to its guideline for thiopurine dosing, focusing on the enzymes TPMT and NUDT15. These enzymes…
A Pharmacogenetic Roadmap for Safer Thiopurine Dosing
A Pharmacogenetic Roadmap for Safer Thiopurine Dosing The Clinical Pharmacogenetics Implementation Consortium (CPIC) has issued a crucial 2025 update to its guideline for thiopurine dosing, focusing on the enzymes TPMT and NUDT15. These enzymes are responsible for metabolizing drugs like azathioprine, mercaptopurine, and thioguanine, which are used in conditions ranging from autoimmune diseases to post-transplant immunosuppression. The guideline provides specific, genotype-based recommendations for adjusting starting doses to mitigate the risk of severe, potentially life-threatening myelosuppression, a known adverse effect in patients with reduced-function genetic variants.
blog.sciencebriefing.com
February 3, 2026 at 7:50 AM
A Genomic Blueprint for Safer Thiopurine Dosing

A Genomic Blueprint for Safer Thiopurine Dosing The Clinical Pharmacogenetics Implementation Consortium (CPIC) has released a crucial 2025 update to its guideline for thiopurine dosing, a cornerstone of personalized medicine in pharmacology. This…
A Genomic Blueprint for Safer Thiopurine Dosing
A Genomic Blueprint for Safer Thiopurine Dosing The Clinical Pharmacogenetics Implementation Consortium (CPIC) has released a crucial 2025 update to its guideline for thiopurine dosing, a cornerstone of personalized medicine in pharmacology. This update refines recommendations for adjusting starting doses of drugs like azathioprine, mercaptopurine, and thioguanine based on genetic testing for two key enzymes: thiopurine methyltransferase (TPMT) and Nudix hydrolase 15 (NUDT15).
blog.sciencebriefing.com
February 3, 2026 at 6:15 AM