#NatureBiotech
The importance of the thymus gland was rejuvenated by AI!
Our @TheLancet essay and a @NatureBiotech perspective on the renaissance
thelancet.com/journals/lancet/article/PIIS0140-6736(26)00926-8/fulltext
nature.com/articles/s41...
May 16, 2026 at 4:50 PM
Fresh in @NatureBiotech! We developed a synthetic biology tool for tracking gene transfer in microbial communities and applied it to study plasmid hosts in a wastewater microbiome. Awesome collab with James Chappell & @joffsilberg.bsky.social and incredible students. www.nature.com/articles/s41...
Information storage across a microbial community using universal RNA barcoding - Nature Biotechnology
Barcoding microbial ribosomal RNA creates a recording of gene transfer events without requiring translation.
www.nature.com
March 18, 2025 at 3:57 PM
1. Excited to share CONCORD, out in @NatureBiotech, an ML framework for single-cell analysis addressing integration, dimensionality reduction, and denoising in one go by @qinzhu1.🔗 www.nature.com/articles/s41... Check out this CONCORD model of worm development resolving differentiation trajectories:
January 13, 2026 at 1:10 PM
Excited to share our latest work, now out in
@NatureBiotech
! We introduce SEED-Selection, a powerful method that enables high-efficiency enrichment of T cells edited at multiple loci in a single step 🧵👇

www.nature.com/articles/s41...
SEED-Selection enables high-efficiency enrichment of primary T cells edited at multiple loci - Nature Biotechnology
Primary T cells with multiple genetic modifications are rapidly isolated by negative selection.
www.nature.com
February 5, 2025 at 7:03 PM
Monomethyl fumarate α-ketoester enables #OxidativeStress/Peroxide-dependent release at the site of tissue injury

NRF2-activating effects validated in mouse pain models of peripheral nerve injury or osteoarthritis

#NatureBiotech 2024
www.nature.com/articles/s41...
September 14, 2025 at 7:50 AM
PRISM
profiling of RNA in situ through Single-round imaging

#SpatilaOmics

Up to 64 plex
Spectral barcoding

30-gene panels for 3D spatial mapping of human tumors, mouse brain & mouse embryos

Only a conventional confocal microscope needed

#NatureBiotech 2025
www.nature.com/articles/s41...
November 3, 2025 at 12:31 PM
Soil microbiome engineering for sustainability in a changing environment

NatureBiotech by Janet Jansson et al

www.nature.com/articles/s41...
November 8, 2023 at 1:13 PM
CARD
Conditional AutoRegressive-based cell-type Deconvolution #SpatialTranscriptomics

Work on #Visium ST #SlideseqV2

Gaussian kernel to model #SpatialCorrelation

Impute cell type & gene info at unmeasured locations

#NatureBiotech 2022
www.nature.com/articles/s41...
February 17, 2024 at 1:04 PM
1/ 🚨 Breakthrough in IBD treatment! Insilico Medicine's AI-developed gut-restricted PHD inhibitor, ISM012-042, offers a novel solution for intestinal inflammation and mucosal barrier repair. 🚀 Read on for key findings from the latest @NatureBiotech study. 🧵
December 15, 2024 at 5:31 AM
Unidirectional transport of native proteins through an engineered #nanopore!
Giovanni Maglia and colleagues use fixed charges to engineer a strong electroosmotic flow to thread and stretch proteins across a nanopore. Out now in NatureBiotech
doi.org/10.1038/s415...
🧪🧬🖥️
September 19, 2023 at 1:35 PM
NEW! Beyond the blood: expanding CAR T cell therapy to solid tumors @NatureBiotech 🧪#Tcell #immunotherapy #celltherapy #genetherapy @UgiUslu @carlhjune www.nature.com/articles/s41...
Beyond the blood: expanding CAR T cell therapy to solid tumors - Nature Biotechnology
Recent clinical trials testing CAR T cells on solid tumors have yielded promising outcomes that can be enhanced with further CAR engineering.
www.nature.com
November 13, 2024 at 8:46 PM
#CRISPR Cas3 produces variable long deletions upstream of PAM (~80% upstream, ~20% downstream)

Here is an elegant example for Cas3 editing of transthyretin/TTR in 👤cells & 🐭

~9kb mean deletion

8-mo humanized 🐭liver by 1 wk
👉⏬75% serum human TTR

#NatureBiotech 2026
www.nature.com/articles/s41...
January 14, 2026 at 8:54 PM
De novo detection of Somatic Mutations in scRNAseq & scATACseq data

SComatic

github.com/cortes-ciria...

Tracing human Clonal Heterogeneity (& even Lineage!?🤓)

#NatureBiotech 2024
www.nature.com/articles/s41...
August 3, 2026 at 1:06 PM
iSTAR (Inferring Super-resolution Tissue ARchitecture)
Predict spatial gene expression at single-cell & whole-transcriptome level

based on #Xenium (<1000 genes) #Visium (Not single-cell) #SpatialTranscritomics + HE histology

#Superpixel

#NatureBiotech 2024
www.nature.com/articles/s41...
January 7, 2024 at 1:34 PM
Fantastic new study by Ali Max Erturk (https://www.erturk-lab.com/) using wildDISCO to evenly label & image diverse biological systems in the entire mouse! Hot off the press in NatureBiotech, check it out

https://www.nature.com/articles/s41587-023-01846-0
July 11, 2023 at 6:10 PM
Protein2PAM uses deep learning, trained on 45K+ data points, to enhance CRISPR PAM targeting without tedious experiments. PMID:41629462, Nat Biotechnol 2026, @NatureBiotech @OTSociety @NAR_Open https://doi.org/10.1038/s41587-025-02995-0 #Medsky #Pharmsky #RNA #ASHG #ESHG 🧪
Customizing CRISPR–Cas PAM specificity with protein language models | Nature Biotechnology
CRISPR–Cas enzymes must recognize a protospacer-adjacent motif (PAM) to edit a genomic site, greatly limiting the range of targetable sequences in a genome. Although engineering strategies to alter PAM specificity exist, they typically require labor-intensive, iterative experimentation. We introduce an evolution-informed deep learning model, Protein2PAM, to efficiently guide the design of Cas protein variants tailored to recognize specific PAMs. Trained on a dataset of over 45,000 CRISPR–Cas PAMs, Protein2PAM rapidly and accurately predicts PAM specificity directly from Cas proteins across type I, II and V CRISPR–Cas systems. Using in silico mutagenesis, the model identifies residues critical for PAM recognition in Cas9 without using structural information. We use Protein2PAM to computationally evolve Nme1Cas9, generating variants with broadened PAM recognition and up to a 50-fold increase in PAM cleavage rates compared to the wild type in vitro. Our machine learning approach allows Ca
doi.org
February 9, 2026 at 2:10 AM
Il va bien il pense qu'on injecte du MRNA autoréplicateur toxique dans vos animaux domestiques pour vous mentir sur le hantavirus
June 9, 2026 at 2:27 PM
Spectacular : Interleukin (IL)-10-producing #CARTcells retain their metabolic fitness, resist T cell exhaustion and display unprecedented antitumor activity agains solid tumors in a mice model.
#CellTherapy
www.nature.com/articles/s41...
@NatureBiotech
IL-10-expressing CAR T cells resist dysfunction and mediate durable clearance of solid tumors and metastases - Nature Biotechnology
CAR T cells engineered to express IL-10 eradicate solid tumors and metastases.
www.nature.com
November 13, 2024 at 11:23 AM
Excited (but sad) to wish newly minted Prof. Changuk Chung off, to start his lab @KAIST! An amazing postdoc with 10 publications (@Nature x2 and @NatureBiotech, @NatureGenet). He is ready!! Changuk transformed the #devneurosci and #mosaicism fields. Good luck!
January 31, 2025 at 3:37 PM
Thanks to @NatureBiotech for featuring our latest piece, co-authored with the fantastic Yumeng Zhang and Jiangning Song.
December 11, 2025 at 10:03 AM
#Baysor

#CellSegmentation for 2D 3D image-based #SpatialTranscriptomics

Based on Transcript composition #MarkovRandomField
-/+Stain image #PriorSegmentationConfidence

Work with #MERFISH #smFISH #STARmap
⏫Detection of vascular cells

#NatureBiotech 2022
www.nature.com/articles/s41...
December 26, 2023 at 2:46 PM
Exciting new technique for pharmaceutical delivery of siRNA @NatureBiotech
http://goo.gl/eKObks http://t.co/uVkIbMyrSm
November 24, 2024 at 1:44 AM
A peer reviewed publication in #NatureBiotech highlights the comprehensiveness, accuracy & scalability of #Illumina #DRAGEN germline algorithms. Get access to the data, truth sets used, & detailed analysis steps. Read the publication to learn more: go.nature.com/48qWp5R
Comprehensive genome analysis and variant detection at scale using DRAGEN - Nature Biotechnology
DRAGEN rapidly identifies diverse types of genetic variants.
go.nature.com
November 11, 2024 at 2:47 PM
This tweet appeared under this Techmeme headline:

@naturebiotech:

Integration of proteomic aging clocks in a phase 2a clinical trial supports simultaneous geroprotective assessment https://www.nature.com/...
September 7, 2026 at 11:13 PM