📝 "Engaging figures"
Master 7 principles for more impactful data visualization.
👤 Helena Jambor (@helenajambor.bsky.social)
🔗 https://helenajamborwrites.netlify.app/posts/26-10_Proximity/
#rladies#rstats#datavis#biovis#naturemethods
Master 7 principles for more impactful data visualization.
👤 Helena Jambor (@helenajambor.bsky.social)
🔗 https://helenajamborwrites.netlify.app/posts/26-10_Proximity/
#rladies#rstats#datavis#biovis#naturemethods
October 26, 2026 at 1:41 PM
📝 "Engaging figures"
Master 7 principles for more impactful data visualization.
👤 Helena Jambor (@helenajambor.bsky.social)
🔗 https://helenajamborwrites.netlify.app/posts/26-10_Proximity/
#rladies#rstats#datavis#biovis#naturemethods
Master 7 principles for more impactful data visualization.
👤 Helena Jambor (@helenajambor.bsky.social)
🔗 https://helenajamborwrites.netlify.app/posts/26-10_Proximity/
#rladies#rstats#datavis#biovis#naturemethods
2/3 We also apply CytoVI to routine clinical data to identify CLL cells and classify patient samples—a step toward reusing clinical cytometry archives for research and reference mapping.
Full walkthrough in our X tweetorial:
x.com/IdoAmitLab/s...
Full walkthrough in our X tweetorial:
x.com/IdoAmitLab/s...
IdoAmitLab (@IdoAmitLab) on X
Different panels. Different technologies. Can we bring flow cytometry into biology’s AI revolution?
Introducing CytoVI in @NatureMethods: linking cytometry & single-cell genomics to predict missing ma...
x.com
October 1, 2026 at 6:36 AM
2/3 We also apply CytoVI to routine clinical data to identify CLL cells and classify patient samples—a step toward reusing clinical cytometry archives for research and reference mapping.
Full walkthrough in our X tweetorial:
x.com/IdoAmitLab/s...
Full walkthrough in our X tweetorial:
x.com/IdoAmitLab/s...
Very happy about this months #PointsOfView in #NatureMethods - The Graphical Abstract.
Co-authored with @simonduerr.eu, with whom I share a long-time passion for #Icons #BioIcons and #CC0 figures - and fuelled by our joint workshop for the @sib.swiss at [BC]2!
Here is a 🎁 link lnkd.in/e5ew-E2R
Co-authored with @simonduerr.eu, with whom I share a long-time passion for #Icons #BioIcons and #CC0 figures - and fuelled by our joint workshop for the @sib.swiss at [BC]2!
Here is a 🎁 link lnkd.in/e5ew-E2R
September 10, 2026 at 4:04 PM
Very happy about this months #PointsOfView in #NatureMethods - The Graphical Abstract.
Co-authored with @simonduerr.eu, with whom I share a long-time passion for #Icons #BioIcons and #CC0 figures - and fuelled by our joint workshop for the @sib.swiss at [BC]2!
Here is a 🎁 link lnkd.in/e5ew-E2R
Co-authored with @simonduerr.eu, with whom I share a long-time passion for #Icons #BioIcons and #CC0 figures - and fuelled by our joint workshop for the @sib.swiss at [BC]2!
Here is a 🎁 link lnkd.in/e5ew-E2R
Great new @NatureMethods paper, "Spatial isoform sequencing at single-cell resolution reveals cell-type-specific spatial isoform variability in multiple brain cell types," by our EIPM Drs. Lieke Michielsen and Iman Hajirasouliha!
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Spatial isoform sequencing at single-cell resolution reveals cell-type-specific spatial isoform variability in multiple brain cell types - Nature Methods
Spl-ISO-Seq2, Spl-IsoQuant-2 and Spl-IsoFind enable isoform sequencing, barcode calling of >450 million barcodes, and spatially variable isoform detection with high spatial resolution as demonstrat...
www.nature.com
September 9, 2026 at 5:56 PM
Great new @NatureMethods paper, "Spatial isoform sequencing at single-cell resolution reveals cell-type-specific spatial isoform variability in multiple brain cell types," by our EIPM Drs. Lieke Michielsen and Iman Hajirasouliha!
www.nature.com/articles/s41...
www.nature.com/articles/s41...
The most sensitive green and red #norepinephrine #sensors engineered to date are out in #naturemethods! Deeply grateful to all our funders and contributors who made this work possible. A true team effort. @erc.europa.eu @snsf.ch doi.org/10.1038/s415...
Next-generation multicolor indicators for in vivo imaging of norepinephrine - Nature Methods
Improved red and green indicators for norepinephrine and their characterization are reported. These indicators allow detection of norepinephrine release in awake behaving mice in dual-color fiber phot...
doi.org
February 26, 2026 at 10:20 AM
The most sensitive green and red #norepinephrine #sensors engineered to date are out in #naturemethods! Deeply grateful to all our funders and contributors who made this work possible. A true team effort. @erc.europa.eu @snsf.ch doi.org/10.1038/s415...
📢 Announcing the Adaptive Immune Profiling Challenge 2025!
Can you predict immune state labels from adaptive immune receptor repertoires?
💰 $10,000 prize pool!
📄 Top 10 teams co-author a @NatureMethods paper!
🗓️ Launches Nov 5 on @Kaggle
More Info: uio-bmi.github.io/adaptive_imm...
Can you predict immune state labels from adaptive immune receptor repertoires?
💰 $10,000 prize pool!
📄 Top 10 teams co-author a @NatureMethods paper!
🗓️ Launches Nov 5 on @Kaggle
More Info: uio-bmi.github.io/adaptive_imm...
October 23, 2025 at 9:23 PM
📢 Announcing the Adaptive Immune Profiling Challenge 2025!
Can you predict immune state labels from adaptive immune receptor repertoires?
💰 $10,000 prize pool!
📄 Top 10 teams co-author a @NatureMethods paper!
🗓️ Launches Nov 5 on @Kaggle
More Info: uio-bmi.github.io/adaptive_imm...
Can you predict immune state labels from adaptive immune receptor repertoires?
💰 $10,000 prize pool!
📄 Top 10 teams co-author a @NatureMethods paper!
🗓️ Launches Nov 5 on @Kaggle
More Info: uio-bmi.github.io/adaptive_imm...
Congratulations to Professor @NHatzakis and his research group on the publication in the esteemed journal @naturemethods #chemistry #research #science
doi.org/10.1038/s415...
doi.org/10.1038/s415...
doi.org
May 12, 2025 at 8:20 AM
Congratulations to Professor @NHatzakis and his research group on the publication in the esteemed journal @naturemethods #chemistry #research #science
doi.org/10.1038/s415...
doi.org/10.1038/s415...
The AIRR-ML-2025 challenge is LIVE on
@Kaggle, but the real question is… are you up for it?
We’re challenging the best in #MachineLearning & #DataScience to decode the immune system. Think you have the skills? Prove it.
💰 $10,000 prize pool 📄 Co-author a @NatureMethods
paper
@Kaggle, but the real question is… are you up for it?
We’re challenging the best in #MachineLearning & #DataScience to decode the immune system. Think you have the skills? Prove it.
💰 $10,000 prize pool 📄 Co-author a @NatureMethods
paper
November 14, 2025 at 7:11 PM
The AIRR-ML-2025 challenge is LIVE on
@Kaggle, but the real question is… are you up for it?
We’re challenging the best in #MachineLearning & #DataScience to decode the immune system. Think you have the skills? Prove it.
💰 $10,000 prize pool 📄 Co-author a @NatureMethods
paper
@Kaggle, but the real question is… are you up for it?
We’re challenging the best in #MachineLearning & #DataScience to decode the immune system. Think you have the skills? Prove it.
💰 $10,000 prize pool 📄 Co-author a @NatureMethods
paper
More info on idTrcker on this @naturemethods paper by @dePolavieja lab #behaviour #ecology
nature.com/nmeth/journal/…
nature.com/nmeth/journal/…
November 26, 2024 at 8:38 PM
More info on idTrcker on this @naturemethods paper by @dePolavieja lab #behaviour #ecology
nature.com/nmeth/journal/…
nature.com/nmeth/journal/…
Andrzej Zieleziński @uam-ibmib.bsky.social with Adam Gudyś & @sdeorowicz.bsky.social dvelopped Vclust: fast and accurate tool for calculating intergenomic similarities (like ANI) and clustering virus/#phage genomes. Just published @naturemethods - congratulations! www.nature.com/articles/s41...
May 16, 2025 at 1:09 PM
Andrzej Zieleziński @uam-ibmib.bsky.social with Adam Gudyś & @sdeorowicz.bsky.social dvelopped Vclust: fast and accurate tool for calculating intergenomic similarities (like ANI) and clustering virus/#phage genomes. Just published @naturemethods - congratulations! www.nature.com/articles/s41...
#HelmholtzMunich Shares Guide to Single-Cell Atlases
A team led by Dr. Malte Lücken, Helmholtz Munich, has published a guide in @naturemethods.bsky.social to standardize the creation of single-cell atlases – these are crucial tools for mapping cellular diversity.
👉 t1p.de/kt8ou
A team led by Dr. Malte Lücken, Helmholtz Munich, has published a guide in @naturemethods.bsky.social to standardize the creation of single-cell atlases – these are crucial tools for mapping cellular diversity.
👉 t1p.de/kt8ou
December 13, 2024 at 11:02 AM
#HelmholtzMunich Shares Guide to Single-Cell Atlases
A team led by Dr. Malte Lücken, Helmholtz Munich, has published a guide in @naturemethods.bsky.social to standardize the creation of single-cell atlases – these are crucial tools for mapping cellular diversity.
👉 t1p.de/kt8ou
A team led by Dr. Malte Lücken, Helmholtz Munich, has published a guide in @naturemethods.bsky.social to standardize the creation of single-cell atlases – these are crucial tools for mapping cellular diversity.
👉 t1p.de/kt8ou
Fantastic news for all researchers using images & image analysis! 🧫🔬Our time-saving, #Reproducibility-superpowered checklists are fully #OpenAccess 🗝 in @naturemethods!
Working on your next manuscript? 📝✨ Try it out:
www.nature.com/articles/s41...
Working on your next manuscript? 📝✨ Try it out:
www.nature.com/articles/s41...
September 30, 2023 at 11:30 PM
Fantastic news for all researchers using images & image analysis! 🧫🔬Our time-saving, #Reproducibility-superpowered checklists are fully #OpenAccess 🗝 in @naturemethods!
Working on your next manuscript? 📝✨ Try it out:
www.nature.com/articles/s41...
Working on your next manuscript? 📝✨ Try it out:
www.nature.com/articles/s41...
Help needed: submitted a manuscript to Nature Methods, and although I received a notification that it was rejected, I never received a formal decision letter. Has anyone experienced something similar? Any suggestions on how to phrase it? 🙏
#ManuscriptSubmission #NatureMethods
#ManuscriptSubmission #NatureMethods
July 14, 2025 at 3:24 PM
Help needed: submitted a manuscript to Nature Methods, and although I received a notification that it was rejected, I never received a formal decision letter. Has anyone experienced something similar? Any suggestions on how to phrase it? 🙏
#ManuscriptSubmission #NatureMethods
#ManuscriptSubmission #NatureMethods
Nice brief advice in this month's issue of @naturemethods editorial : "So you're writing a paper#science #scicomm #research [Sounds like common sense, but imp to remember.]
nature.com/articles/nmeth…
nature.com/articles/nmeth…
So you're writing a paper
Nature Methods - Writing a clear, accurate and convincing scientific paper is both an art and a skill. It is one well worth mastering.
www.nature.com
January 20, 2025 at 7:14 PM
Nice brief advice in this month's issue of @naturemethods editorial : "So you're writing a paper#science #scicomm #research [Sounds like common sense, but imp to remember.]
nature.com/articles/nmeth…
nature.com/articles/nmeth…
P values @naturemethods "need to bring many sources of evidence (...) before drawing scientific conclusions#pvalue
go.nature.com/2nOFiGQ
go.nature.com/2nOFiGQ
Interpreting P values
Nature Methods - A P value measures a sample's compatibility with a hypothesis, not the truth of the hypothesis.
go.nature.com
January 20, 2025 at 7:08 PM
P values @naturemethods "need to bring many sources of evidence (...) before drawing scientific conclusions#pvalue
go.nature.com/2nOFiGQ
go.nature.com/2nOFiGQ
So happy to see our work with @guijacquemet, @LaineBioImaging and @HenriquesLab in @naturemethods out! I believe the topic is specially relevant for the #BioImageAnalysis community: "Avoiding a replication crisis in deep-learning-based bioimage analysis".
www.nature.com
www.nature.com
www.nature.com
May 7, 2026 at 9:26 AM
So happy to see our work with @guijacquemet, @LaineBioImaging and @HenriquesLab in @naturemethods out! I believe the topic is specially relevant for the #BioImageAnalysis community: "Avoiding a replication crisis in deep-learning-based bioimage analysis".
In honor of #WorldAsthmaDaymonth browse #asthma researchfrom @Springernature @nature @BioMedCentral @NewAdisInsight @NanoNatResearch Incl. Dr. Ramachandran talking about laboratory procedures @SProtocols @NatureProtocols @naturemethods
goo.gl/BxBBR4
goo.gl/BxBBR4
Goo.gl is sunsetting
goo.gl
January 15, 2025 at 4:18 PM
In honor of #WorldAsthmaDaymonth browse #asthma researchfrom @Springernature @nature @BioMedCentral @NewAdisInsight @NanoNatResearch Incl. Dr. Ramachandran talking about laboratory procedures @SProtocols @NatureProtocols @naturemethods
goo.gl/BxBBR4
goo.gl/BxBBR4
Our heavily updated final version of ROCKET for experiment-guided structure modeling is out in @naturemethods!
New frontiers like high-throughput fragment screening and mid-res tomography are forcing a rethink of how experiments are modeled. ROCKET+OpenFold proposes a solution👇
New frontiers like high-throughput fragment screening and mid-res tomography are forcing a rethink of how experiments are modeled. ROCKET+OpenFold proposes a solution👇
ROCKET 🚀 inference-time optimization of AlphaFold to fit structural data is published! rdcu.be/fa9YH
Since our preprint, we’ve pushed it to regimes where other methods break: low resolution, weak signal, real experimental edge cases. Here’s what we learned: 1/15
Since our preprint, we’ve pushed it to regimes where other methods break: low resolution, weak signal, real experimental edge cases. Here’s what we learned: 1/15
AlphaFold as a prior: experimental structure determination conditioned on a pretrained neural network
Nature Methods - ROCKET improves experimental structure elucidation by integrating implicit structural knowledge from OpenFold, a trainable reimplementation of AlphaFold2, with X-ray...
rdcu.be
April 1, 2026 at 2:18 PM
Our heavily updated final version of ROCKET for experiment-guided structure modeling is out in @naturemethods!
New frontiers like high-throughput fragment screening and mid-res tomography are forcing a rethink of how experiments are modeled. ROCKET+OpenFold proposes a solution👇
New frontiers like high-throughput fragment screening and mid-res tomography are forcing a rethink of how experiments are modeled. ROCKET+OpenFold proposes a solution👇
When conferences provide childcare, science doesn’t “accommodate parents”. It retains talent.
Thanks Vivien Marx for including my voice in your @NatureMethods piece on conference childcare, access, & why affordability is still the choke point.
www.nature.com/articles/s41...
#ParentsInSTEM
Thanks Vivien Marx for including my voice in your @NatureMethods piece on conference childcare, access, & why affordability is still the choke point.
www.nature.com/articles/s41...
#ParentsInSTEM
Conference daycare
Nature Methods - Not all conferences offer childcare, but when they do, these scientists, who are also mothers, rejoice. The toys are pretty good, too.
www.nature.com
January 6, 2026 at 7:32 PM
When conferences provide childcare, science doesn’t “accommodate parents”. It retains talent.
Thanks Vivien Marx for including my voice in your @NatureMethods piece on conference childcare, access, & why affordability is still the choke point.
www.nature.com/articles/s41...
#ParentsInSTEM
Thanks Vivien Marx for including my voice in your @NatureMethods piece on conference childcare, access, & why affordability is still the choke point.
www.nature.com/articles/s41...
#ParentsInSTEM
Finally out!
“Challenges and perspectives in computational deconvolution of genomics data”. Kudos Drs Garmire, Teschendorff & team!!
🙏🏼@GarmireGroup for including me. @naturemethods for publishing!
“Challenges and perspectives in computational deconvolution of genomics data”. Kudos Drs Garmire, Teschendorff & team!!
🙏🏼@GarmireGroup for including me. @naturemethods for publishing!
Challenges and perspectives in computational deconvolution of genomics data - Nature Methods
This Perspective provides an overview of major challenges and associated recommendations in computational deconvolution for genomics data.
www.nature.com
February 22, 2024 at 6:23 AM
Finally out!
“Challenges and perspectives in computational deconvolution of genomics data”. Kudos Drs Garmire, Teschendorff & team!!
🙏🏼@GarmireGroup for including me. @naturemethods for publishing!
“Challenges and perspectives in computational deconvolution of genomics data”. Kudos Drs Garmire, Teschendorff & team!!
🙏🏼@GarmireGroup for including me. @naturemethods for publishing!
Congratulations to @sergiomarcosalas.bsky.social, @nilssonlab.org, and their team on a new #NatureMethods publication featuring the Xenium platform! Read how Xenium spatial stacked up against 8 other systems & get independently validated best practices & recommendations: go.nature.com/3DZ0PpR
March 27, 2025 at 4:26 PM
Congratulations to @sergiomarcosalas.bsky.social, @nilssonlab.org, and their team on a new #NatureMethods publication featuring the Xenium platform! Read how Xenium spatial stacked up against 8 other systems & get independently validated best practices & recommendations: go.nature.com/3DZ0PpR
La IA que amplía el mapa de las proteínas humanas #DeepLearning #InteligenciaArtificial #Proteomica #Proteinas #Biomedicina #MedicinaDePrecision #Ciencia #Innovacion #Investigacion #Salud #Tecnologia #NatureMethods #felizmartes #24demarzo donporque.com/ia-amplia-ma...
La IA que amplía el mapa de las proteínas humanas
Un modelo de IA amplía la lectura de proteínas, mejora la cobertura del proteoma y empuja la proteómica hacia una nueva fase biomédica. La noticia importante de estas horas en deep learning no sale de...
donporque.com
March 24, 2026 at 7:45 AM
La IA que amplía el mapa de las proteínas humanas #DeepLearning #InteligenciaArtificial #Proteomica #Proteinas #Biomedicina #MedicinaDePrecision #Ciencia #Innovacion #Investigacion #Salud #Tecnologia #NatureMethods #felizmartes #24demarzo donporque.com/ia-amplia-ma...
You don't want to miss out on this manuscript. For 𝑛𝑒𝑢𝑟𝑜𝑏𝑖𝑜𝑙𝑜𝑔𝑖𝑠𝑡𝑠, we have some very interesting findings 😉. For 𝑐𝑜𝑚𝑝𝑢𝑡𝑎𝑡𝑖𝑜𝑛𝑎𝑙 𝑚𝑒𝑡ℎ𝑜𝑑𝑜𝑙𝑜𝑔𝑖𝑠𝑡𝑠, the project has been a source of limitless creativity and innovation, including hashtag#SpotSweeper published in hashtag#NatureMethods.
February 20, 2026 at 8:18 PM
You don't want to miss out on this manuscript. For 𝑛𝑒𝑢𝑟𝑜𝑏𝑖𝑜𝑙𝑜𝑔𝑖𝑠𝑡𝑠, we have some very interesting findings 😉. For 𝑐𝑜𝑚𝑝𝑢𝑡𝑎𝑡𝑖𝑜𝑛𝑎𝑙 𝑚𝑒𝑡ℎ𝑜𝑑𝑜𝑙𝑜𝑔𝑖𝑠𝑡𝑠, the project has been a source of limitless creativity and innovation, including hashtag#SpotSweeper published in hashtag#NatureMethods.
Our paper describing UnitMatch software "tracking neurons across days with high-density probes", appeared in this month's issue of #NatureMethods. Missed it? Read it here: www.nature.com/articles/s41...
April 14, 2025 at 2:45 PM
Our paper describing UnitMatch software "tracking neurons across days with high-density probes", appeared in this month's issue of #NatureMethods. Missed it? Read it here: www.nature.com/articles/s41...