Theiagen is a 2026 @genomeweb.bsky.social Best Places to Work honoree! Our 26-person team works remotely across the US, Mexico, Portugal and the UK, and this one belongs to all of them.
Want to join us? https://theiagen.com/careers-at-theiagen
#BestPlacesToWork #PathogenGenomics
Want to join us? https://theiagen.com/careers-at-theiagen
#BestPlacesToWork #PathogenGenomics
October 29, 2026 at 1:00 PM
Theiagen is a 2026 @genomeweb.bsky.social Best Places to Work honoree! Our 26-person team works remotely across the US, Mexico, Portugal and the UK, and this one belongs to all of them.
Want to join us? https://theiagen.com/careers-at-theiagen
#BestPlacesToWork #PathogenGenomics
Want to join us? https://theiagen.com/careers-at-theiagen
#BestPlacesToWork #PathogenGenomics
3/ 📤 Ready to try it? Upload raw reads files alongside your next submission (individual or bulk), add them to your existing consensus sequences, and check out our docs for the details on required metadata.
🔗 pathoplexus.org/news/2026-09...
#OpenData #OpenScience #PathogenGenomics
🔗 pathoplexus.org/news/2026-09...
#OpenData #OpenScience #PathogenGenomics
September 22, 2026 at 8:06 PM
3/ 📤 Ready to try it? Upload raw reads files alongside your next submission (individual or bulk), add them to your existing consensus sequences, and check out our docs for the details on required metadata.
🔗 pathoplexus.org/news/2026-09...
#OpenData #OpenScience #PathogenGenomics
🔗 pathoplexus.org/news/2026-09...
#OpenData #OpenScience #PathogenGenomics
Proud to see Theiagen’s @curtiskapsak.bsky.social coauthor a new paper on StxTyper, an open-source approach to typing Shiga toxin operons from genomic sequence.
https://www.mdpi.com/2076-2607/14/8/1607
#PathogenGenomics #Bioinformatics #PublicHealth
https://www.mdpi.com/2076-2607/14/8/1607
#PathogenGenomics #Bioinformatics #PublicHealth
September 9, 2026 at 1:00 AM
Proud to see Theiagen’s @curtiskapsak.bsky.social coauthor a new paper on StxTyper, an open-source approach to typing Shiga toxin operons from genomic sequence.
https://www.mdpi.com/2076-2607/14/8/1607
#PathogenGenomics #Bioinformatics #PublicHealth
https://www.mdpi.com/2076-2607/14/8/1607
#PathogenGenomics #Bioinformatics #PublicHealth
Happy to share my first paper!
We developed an optimised #ONT workflow for sequencing mycobacteria directly from positive MGIT cultures, achieving 98.3% agreement with Illumina for species identification, with reliable results often within 6 hours.
#PathogenGenomics #TB @modmedmicro.bsky.social
We developed an optimised #ONT workflow for sequencing mycobacteria directly from positive MGIT cultures, achieving 98.3% agreement with Illumina for species identification, with reliable results often within 6 hours.
#PathogenGenomics #TB @modmedmicro.bsky.social
Validation of an optimized Oxford Nanopore sequencing workflow versus Illumina for mycobacteria from primary MGIT culture | Microbiology Spectrum
Rapid genomic characterization of mycobacterial infections is important for timely
patient management, infection control, and public health surveillance. However, many
diagnostic laboratories rely on ...
journals.asm.org
August 25, 2026 at 4:18 PM
Happy to share my first paper!
We developed an optimised #ONT workflow for sequencing mycobacteria directly from positive MGIT cultures, achieving 98.3% agreement with Illumina for species identification, with reliable results often within 6 hours.
#PathogenGenomics #TB @modmedmicro.bsky.social
We developed an optimised #ONT workflow for sequencing mycobacteria directly from positive MGIT cultures, achieving 98.3% agreement with Illumina for species identification, with reliable results often within 6 hours.
#PathogenGenomics #TB @modmedmicro.bsky.social
🧬 Our #myBaits tech helped power a major study on plague-driven human evolution—featured by CNN!
Shoutout to our very own Jennifer Klunk, PhD, for representing @arborbio.bsky.social in this fascinating work
🔗 www.cnn.com/2025/06/03/s...
#Genomics #AncientDNA #HumanEvolution #Plague #PathogenGenomics
Shoutout to our very own Jennifer Klunk, PhD, for representing @arborbio.bsky.social in this fascinating work
🔗 www.cnn.com/2025/06/03/s...
#Genomics #AncientDNA #HumanEvolution #Plague #PathogenGenomics
June 20, 2025 at 5:58 PM
🧬 Our #myBaits tech helped power a major study on plague-driven human evolution—featured by CNN!
Shoutout to our very own Jennifer Klunk, PhD, for representing @arborbio.bsky.social in this fascinating work
🔗 www.cnn.com/2025/06/03/s...
#Genomics #AncientDNA #HumanEvolution #Plague #PathogenGenomics
Shoutout to our very own Jennifer Klunk, PhD, for representing @arborbio.bsky.social in this fascinating work
🔗 www.cnn.com/2025/06/03/s...
#Genomics #AncientDNA #HumanEvolution #Plague #PathogenGenomics
Read our case study: Molecular Evolution & Increasing Macrolide Resistance of Bordetella pertussis. Novogene's WGS + phylogenetics reveal emergence of A2047G mutation in clinical isolates over 2016-2022. #PathogenGenomics #AMR #WGS https://tinyurl.com/57e4cfhj
July 2, 2026 at 7:05 AM
Read our case study: Molecular Evolution & Increasing Macrolide Resistance of Bordetella pertussis. Novogene's WGS + phylogenetics reveal emergence of A2047G mutation in clinical isolates over 2016-2022. #PathogenGenomics #AMR #WGS https://tinyurl.com/57e4cfhj
Catch this free, on-demand webinar from Novogene on how to characterise Campylobacter directly from clinical samples. Learn how to perform culture-independent sequencing, strain & resistance profiling, and pathogen surveillance. #PathogenGenomics #Microbiology #Webinar https://tinyurl.com/3ee7reyf
June 30, 2026 at 7:05 AM
Catch this free, on-demand webinar from Novogene on how to characterise Campylobacter directly from clinical samples. Learn how to perform culture-independent sequencing, strain & resistance profiling, and pathogen surveillance. #PathogenGenomics #Microbiology #Webinar https://tinyurl.com/3ee7reyf
Read our case study: Molecular Evolution & Increasing Macrolide Resistance of Bordetella pertussis. Novogene's WGS + phylogenetics reveal emergence of A2047G mutation in clinical isolates over 2016-2022. #PathogenGenomics #AMR #WGS https://tinyurl.com/57e4cfhj
May 2, 2026 at 7:05 AM
Read our case study: Molecular Evolution & Increasing Macrolide Resistance of Bordetella pertussis. Novogene's WGS + phylogenetics reveal emergence of A2047G mutation in clinical isolates over 2016-2022. #PathogenGenomics #AMR #WGS https://tinyurl.com/57e4cfhj
Catch this free, on-demand webinar from Novogene on how to characterise Campylobacter directly from clinical samples. Learn how to perform culture-independent sequencing, strain & resistance profiling, and pathogen surveillance. #PathogenGenomics #Microbiology #Webinar https://tinyurl.com/3ee7reyf
April 30, 2026 at 7:05 AM
Catch this free, on-demand webinar from Novogene on how to characterise Campylobacter directly from clinical samples. Learn how to perform culture-independent sequencing, strain & resistance profiling, and pathogen surveillance. #PathogenGenomics #Microbiology #Webinar https://tinyurl.com/3ee7reyf
Read our case study: Molecular Evolution & Increasing Macrolide Resistance of Bordetella pertussis. Novogene's WGS + phylogenetics reveal emergence of A2047G mutation in clinical isolates over 2016-2022. #PathogenGenomics #AMR #WGS https://tinyurl.com/57e4cfhj
March 5, 2026 at 8:05 AM
Read our case study: Molecular Evolution & Increasing Macrolide Resistance of Bordetella pertussis. Novogene's WGS + phylogenetics reveal emergence of A2047G mutation in clinical isolates over 2016-2022. #PathogenGenomics #AMR #WGS https://tinyurl.com/57e4cfhj
Catch this free, on-demand webinar from Novogene on how to characterise Campylobacter directly from clinical samples. Learn how to perform culture-independent sequencing, strain & resistance profiling, and pathogen surveillance. #PathogenGenomics #Microbiology #Webinar https://tinyurl.com/3ee7reyf
March 3, 2026 at 8:05 AM
Catch this free, on-demand webinar from Novogene on how to characterise Campylobacter directly from clinical samples. Learn how to perform culture-independent sequencing, strain & resistance profiling, and pathogen surveillance. #PathogenGenomics #Microbiology #Webinar https://tinyurl.com/3ee7reyf
Read our case study: Molecular Evolution & Increasing Macrolide Resistance of Bordetella pertussis. Novogene's WGS + phylogenetics reveal emergence of A2047G mutation in clinical isolates over 2016-2022. #PathogenGenomics #AMR #WGS https://bit.ly/41FbnDR
January 13, 2026 at 8:05 AM
Read our case study: Molecular Evolution & Increasing Macrolide Resistance of Bordetella pertussis. Novogene's WGS + phylogenetics reveal emergence of A2047G mutation in clinical isolates over 2016-2022. #PathogenGenomics #AMR #WGS https://bit.ly/41FbnDR
Catch this free, on-demand webinar from Novogene on how to characterise Campylobacter directly from clinical samples. Learn how to perform culture-independent sequencing, strain & resistance profiling, and pathogen surveillance. #PathogenGenomics #Microbiology #Webinar https://bit.ly/3URSw3O
January 11, 2026 at 8:05 AM
Catch this free, on-demand webinar from Novogene on how to characterise Campylobacter directly from clinical samples. Learn how to perform culture-independent sequencing, strain & resistance profiling, and pathogen surveillance. #PathogenGenomics #Microbiology #Webinar https://bit.ly/3URSw3O
Introducing PathoBase:
A new Asia-housed genomic platform for rapid analysis of zoonotic pathogens. Supports cgMLST typing & real-time outbreak tracing. Free access for global researchers. 🧬🔍
#PathogenGenomics #OneHealth
Link: pathobase.iotabiome.com
👉
onehealthadv.biomedcentral.com/articles/10....
A new Asia-housed genomic platform for rapid analysis of zoonotic pathogens. Supports cgMLST typing & real-time outbreak tracing. Free access for global researchers. 🧬🔍
#PathogenGenomics #OneHealth
Link: pathobase.iotabiome.com
👉
onehealthadv.biomedcentral.com/articles/10....
PathoBase: an integrated One Health approach for zoonotic pathogen genomics analysis - One Health Advances
The rapid identification and genomic analysis of zoonotic pathogens are essential for effective disease surveillance and outbreak response. PathoBase, an advanced computational platform developed for ...
onehealthadv.biomedcentral.com
September 9, 2025 at 11:56 AM
Introducing PathoBase:
A new Asia-housed genomic platform for rapid analysis of zoonotic pathogens. Supports cgMLST typing & real-time outbreak tracing. Free access for global researchers. 🧬🔍
#PathogenGenomics #OneHealth
Link: pathobase.iotabiome.com
👉
onehealthadv.biomedcentral.com/articles/10....
A new Asia-housed genomic platform for rapid analysis of zoonotic pathogens. Supports cgMLST typing & real-time outbreak tracing. Free access for global researchers. 🧬🔍
#PathogenGenomics #OneHealth
Link: pathobase.iotabiome.com
👉
onehealthadv.biomedcentral.com/articles/10....
Here's an example of a study that *does* take the evolutionary/historical distinctiveness of different pathogen lineages seriously in terms of implications for #GlobalHealth concerns. This chart from Goig et al 2025 shows diff. burdens posed by TB. These have historical roots! #TB #PathogenGenomics
March 29, 2025 at 7:29 PM
Here's an example of a study that *does* take the evolutionary/historical distinctiveness of different pathogen lineages seriously in terms of implications for #GlobalHealth concerns. This chart from Goig et al 2025 shows diff. burdens posed by TB. These have historical roots! #TB #PathogenGenomics
A multi-epitope vaccine candidate for Mycobacterium tuberculosis demonstrates how immunoinformatics can guide antigen discovery and vaccine development.
doi.org/10.1016/j.dc...
#Tuberculosis #VaccineDesign #Immunoinformatics #PathogenGenomics #TBResearch
doi.org/10.1016/j.dc...
#Tuberculosis #VaccineDesign #Immunoinformatics #PathogenGenomics #TBResearch
March 10, 2026 at 1:13 PM
A multi-epitope vaccine candidate for Mycobacterium tuberculosis demonstrates how immunoinformatics can guide antigen discovery and vaccine development.
doi.org/10.1016/j.dc...
#Tuberculosis #VaccineDesign #Immunoinformatics #PathogenGenomics #TBResearch
doi.org/10.1016/j.dc...
#Tuberculosis #VaccineDesign #Immunoinformatics #PathogenGenomics #TBResearch
Genomic characterization of Enterobacter hormaechei from a urinary tract infection identifies key antibiotic-resistance determinants and mobile genetic elements shaping pathogen evolution.
doi.org/10.1016/j.dc...
#Enterobacter #AntimicrobialResistance #PathogenGenomics #UTI #MobileGeneticElements
doi.org/10.1016/j.dc...
#Enterobacter #AntimicrobialResistance #PathogenGenomics #UTI #MobileGeneticElements
March 10, 2026 at 1:12 PM
Genomic characterization of Enterobacter hormaechei from a urinary tract infection identifies key antibiotic-resistance determinants and mobile genetic elements shaping pathogen evolution.
doi.org/10.1016/j.dc...
#Enterobacter #AntimicrobialResistance #PathogenGenomics #UTI #MobileGeneticElements
doi.org/10.1016/j.dc...
#Enterobacter #AntimicrobialResistance #PathogenGenomics #UTI #MobileGeneticElements
Decoding Infection and Transmission welcomes submissions advancing infectious-disease research—from pathogen genomics to transmission dynamics and molecular epidemiology.
Submit your research:
www.editorialmanager.com/dcit/default...
#InfectiousDiseaseResearch #PathogenGenomics #Microbiology
Submit your research:
www.editorialmanager.com/dcit/default...
#InfectiousDiseaseResearch #PathogenGenomics #Microbiology
March 10, 2026 at 1:12 PM
Decoding Infection and Transmission welcomes submissions advancing infectious-disease research—from pathogen genomics to transmission dynamics and molecular epidemiology.
Submit your research:
www.editorialmanager.com/dcit/default...
#InfectiousDiseaseResearch #PathogenGenomics #Microbiology
Submit your research:
www.editorialmanager.com/dcit/default...
#InfectiousDiseaseResearch #PathogenGenomics #Microbiology
🚨CALL FOR ABSTRACTS🚨
Abstract submission deadline:
📆 Mon, March 24
Abstract submission 👉 bit.ly/symposium_su...
Event details & registration 👉 bit.ly/cpgme
The Pathogen Genomics Symposium will be held Mon, April 7.
#globalhealth #pathogengenomics #PathGenSymposium
Abstract submission deadline:
📆 Mon, March 24
Abstract submission 👉 bit.ly/symposium_su...
Event details & registration 👉 bit.ly/cpgme
The Pathogen Genomics Symposium will be held Mon, April 7.
#globalhealth #pathogengenomics #PathGenSymposium
March 17, 2025 at 10:03 PM
🚨CALL FOR ABSTRACTS🚨
Abstract submission deadline:
📆 Mon, March 24
Abstract submission 👉 bit.ly/symposium_su...
Event details & registration 👉 bit.ly/cpgme
The Pathogen Genomics Symposium will be held Mon, April 7.
#globalhealth #pathogengenomics #PathGenSymposium
Abstract submission deadline:
📆 Mon, March 24
Abstract submission 👉 bit.ly/symposium_su...
Event details & registration 👉 bit.ly/cpgme
The Pathogen Genomics Symposium will be held Mon, April 7.
#globalhealth #pathogengenomics #PathGenSymposium
10/ As always - share sequences, cite your SeqSets & DOIs, and let us know what you'd like to see next 💬
🔗 Full July update: pathoplexus.org/news/2026-07...
#OpenData #OpenScience #PathogenGenomics #PublicHealth
🔗 Full July update: pathoplexus.org/news/2026-07...
#OpenData #OpenScience #PathogenGenomics #PublicHealth
July 23, 2026 at 9:23 AM
10/ As always - share sequences, cite your SeqSets & DOIs, and let us know what you'd like to see next 💬
🔗 Full July update: pathoplexus.org/news/2026-07...
#OpenData #OpenScience #PathogenGenomics #PublicHealth
🔗 Full July update: pathoplexus.org/news/2026-07...
#OpenData #OpenScience #PathogenGenomics #PublicHealth
10/ 🙏 As always, thank you to our submitters, curators, partners, and community.
Upload your sequences, cite your SeqSets/DOIs, & tell us what you'd like to see next! 💬
🔗 Full update: pathoplexus.org/news/2026-06...
#OpenData #OpenScience #PublicHealth #PathogenGenomics
Upload your sequences, cite your SeqSets/DOIs, & tell us what you'd like to see next! 💬
🔗 Full update: pathoplexus.org/news/2026-06...
#OpenData #OpenScience #PublicHealth #PathogenGenomics
Pathoplexus | Pathoplexus June Update: Outbreak Response, Global Firsts, and a Growing Community
Pathoplexus is a new, open-source database dedicated to the efficient sharing of human viral pathogen genomic data, fostering global collaboration and public health response.
pathoplexus.org
June 30, 2026 at 2:25 PM
10/ 🙏 As always, thank you to our submitters, curators, partners, and community.
Upload your sequences, cite your SeqSets/DOIs, & tell us what you'd like to see next! 💬
🔗 Full update: pathoplexus.org/news/2026-06...
#OpenData #OpenScience #PublicHealth #PathogenGenomics
Upload your sequences, cite your SeqSets/DOIs, & tell us what you'd like to see next! 💬
🔗 Full update: pathoplexus.org/news/2026-06...
#OpenData #OpenScience #PublicHealth #PathogenGenomics
12/ 🔗 Read the full update here → pathoplexus.org/news/2025-11...
#PathogenGenomics #OpenData #OpenScience #PublicHealth #Bioinformatics
#PathogenGenomics #OpenData #OpenScience #PublicHealth #Bioinformatics
Pathoplexus | Pathoplexus November Update
Pathoplexus is a new, open-source database dedicated to the efficient sharing of human viral pathogen genomic data, fostering global collaboration and public health response.
pathoplexus.org
November 18, 2025 at 7:01 PM
12/ 🔗 Read the full update here → pathoplexus.org/news/2025-11...
#PathogenGenomics #OpenData #OpenScience #PublicHealth #Bioinformatics
#PathogenGenomics #OpenData #OpenScience #PublicHealth #Bioinformatics
Happy to share our new @natcomms.nature.com paper! 👇
We recovered an ancient genome of S. pyogenes from a pre-Columbian #Bolivian #mummy 🧬🇧🇴
🙌 @msabrysarhan.bsky.social
A fascinating glimpse into ancient infectious disease. ⚔️🦠
#ancientDNA #PathogenGenomics #Disease🦠
nature.com/articles/s41...
We recovered an ancient genome of S. pyogenes from a pre-Columbian #Bolivian #mummy 🧬🇧🇴
🙌 @msabrysarhan.bsky.social
A fascinating glimpse into ancient infectious disease. ⚔️🦠
#ancientDNA #PathogenGenomics #Disease🦠
nature.com/articles/s41...
An ancient genome of Streptococcus pyogenes from a pre-Columbian Bolivian mummy - Nature Communications
Streptococcus pyogenes is a human pathogen responsible for a range of diseases. Here, the authors reconstruct an ancient S. pyogenes genome from a pre-Columbian Bolivian mummy, supporting that the pat...
nature.com
May 21, 2026 at 3:01 PM
Happy to share our new @natcomms.nature.com paper! 👇
We recovered an ancient genome of S. pyogenes from a pre-Columbian #Bolivian #mummy 🧬🇧🇴
🙌 @msabrysarhan.bsky.social
A fascinating glimpse into ancient infectious disease. ⚔️🦠
#ancientDNA #PathogenGenomics #Disease🦠
nature.com/articles/s41...
We recovered an ancient genome of S. pyogenes from a pre-Columbian #Bolivian #mummy 🧬🇧🇴
🙌 @msabrysarhan.bsky.social
A fascinating glimpse into ancient infectious disease. ⚔️🦠
#ancientDNA #PathogenGenomics #Disease🦠
nature.com/articles/s41...
Next-Gen Sequencing (NGS) with #MinION is revolutionizing #AMR surveillance, offering real-time insights into microbial genomes. Rapid, portable, and powerful—because precision diagnostics can’t wait! ⏳ #OneHealth #Microbiology #PathogenGenomics
March 5, 2025 at 4:13 PM
Next-Gen Sequencing (NGS) with #MinION is revolutionizing #AMR surveillance, offering real-time insights into microbial genomes. Rapid, portable, and powerful—because precision diagnostics can’t wait! ⏳ #OneHealth #Microbiology #PathogenGenomics
#SFUFHS #SFU #SFUResearch #HealthResearch #EnvironmentalHealth #CIHRProjectGrant #OverdosePrevention #PathogenGenomics
July 29, 2025 at 6:33 PM