#ProteinModeling
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RIKEN, Cleveland Clinic, and IBM successfully demonstrated quantum-classical hybrid computing for large-scale protein modeling, achieving simulation of 12,635 atoms—advancing practical quantum applications in biochemistry.

#QuantumComputing #ProteinModeling #News
RIKEN Protein Model Reaches 12,635 Atoms Using Quantum-Classical Computing
quantumzeitgeist.com
September 16, 2026 at 7:34 PM
csbj.org
🔗 SpheronizaTor: Spherical Voxelization for Interpretable Protein Microenvironment Modeling. doi.org/10.34133/csb...

📚 CSBJ - A Science Partner Journal: spj.science.org/journal/csbj

#StructuralBiology #Bioinformatics #ComputationalBiology #ProteinStructure #ProteinEngineering #ProteinModeling
🔗 SpheronizaTor: Spherical Voxelization for Interpretable Protein Microenvironment Modeling. Computational and Structural Biotechnology Journal (CSBJ). DOI: https://doi.org/10.34133/csbj.0076 📚 CSBJ - A Science Partner Journal: https://spj.science.org/journal/csbj
May 10, 2026 at 2:09 PM
csbj.org
🔗 Replacement of a single residue in an antibody abolishes cognate antigen binding, as predicted by theoretical methods. Computational and Structural Biotechnology Journal, DOI: doi.org/10.1016/j.cs...

📚 CSBJ: www.csbj.org

#AntibodyEngineering #StructuralBiology #ProteinModeling #Biophysics #FTIR
Replacement of a single residue in an antibody abolishes cognate antigen binding, as predicted by theoretical methods. Computational and Structural Biotechnology Journal, DOI: https://doi.org/10.1016/j.csbj.2025.10.018
October 20, 2025 at 4:12 PM
csbj.org
🦟 Could smarter protein modeling unlock eco-friendly pest control?

🔗 TBM preferred to AlphaFold 3 for functional models of insect odorant receptors. Computational and Structural Biotechnology Journal, DOI: doi.org/10.1016/j.cs...

📚 CSBJ: www.csbj.org

#StructuralBiology #ProteinModeling #AlphaFold
TBM preferred to AlphaFold 3 for functional models of insect odorant receptors. Computational and Structural Biotechnology Journal, DOI: https://doi.org/10.1016/j.csbj.2025.08.028
September 14, 2025 at 9:55 PM
jmcastagnetto.bsky.social
"Researchers glimpse the inner workings of #protein language models"

#AI #ProteinModeling #Science

news.mit.edu/2025/researc...
Researchers glimpse the inner workings of protein language models
MIT researchers used sparse autoencoders to shed light on the inner workings of protein language models, an advance that could streamline the process of identifying new drugs or vaccine targets.
news.mit.edu
August 19, 2025 at 7:12 PM
biorxiv-bioinfo.bsky.social
Predicting Antibody and ACE2 Affinity forSARS-CoV-2 BA.2.86 with In Silico ProteinModeling and Docking https://www.biorxiv.org/content/10.1101/2023.11.22.568364v1
Predicting Antibody and ACE2 Affinity forSARS-CoV-2 BA.2.86 with In Silico ProteinModeling and Docking https://www.biorxiv.org/content/10.1101/2023.11.22.568364v1
The emergence of the Omicron sublineage of SARS-CoV-2 virus BA.2.86 (nicknamed "Pirola") has raised
www.biorxiv.org
November 23, 2023 at 10:49 PM
jmlmc.bsky.social
Deep Neural Network for Solving Poisson-Boltzmann Equations on Protein Surfaces

dl.begellhouse.com/journals/558...

#ComputationalBiology #DeepLearningPDE #ProteinModeling
June 10, 2026 at 5:00 PM
biorxivpreprint.bsky.social
Predicting Antibody and ACE2 Affinity forSARS-CoV-2 BA.2.86 with In Silico ProteinModeling and Docking https://www.biorxiv.org/content/10.1101/2023.11.22.568364v1
Predicting Antibody and ACE2 Affinity forSARS-CoV-2 BA.2.86 with In Silico ProteinModeling and Docking https://www.biorxiv.org/content/10.1101/2023.11.22.568364v1
The emergence of the Omicron sublineage of SARS-CoV-2 virus BA.2.86 (nicknamed "Pirola") has raised
www.biorxiv.org
November 23, 2023 at 10:49 PM
newsmedical.bsky.social
MassiveFold advances protein structure prediction with efficient parallel processing 🔬🚀📊 www.news-medical.net/news/2024111... #ProteinStructure #AlphaFold #A #Science #MassiveFold #ComputationalBiology #ProteinModeling #Bioinformatics #DrugDiscovery
MassiveFold advances protein structure prediction with efficient parallel processing
Researchers developed MassiveFold, an enhanced AlphaFold version optimized for parallel processing, which accelerates protein structure predictions from months to hours while increasing structural div...
www.news-medical.net
November 13, 2024 at 2:45 AM
bioinfoadv.bsky.social
PLUS: The CCfrag Python module for fragment-based coiled-coil modeling using #AlphaFold, is now available. Explore its capabilities and access the code here: github.com/Mikel-MG/CCf... #StructuralBiology #ProteinModeling
GitHub - Mikel-MG/CCfrag
Contribute to Mikel-MG/CCfrag development by creating an account on GitHub.
github.com
December 27, 2024 at 3:03 PM
bioinfoadv.bsky.social
PLUS: You can explore the AF-Multimer clustering pipeline, an #OpenSource tool designed to enhance #AlphaFold's ability to predict protein-protein interactions.

Access it here: github.com/KhondamirRus...

#StructuralBiology #ProteinModeling
GitHub - KhondamirRustamov/AF-Multimer-cluster
Contribute to KhondamirRustamov/AF-Multimer-cluster development by creating an account on GitHub.
github.com
December 23, 2024 at 6:59 PM