Are there key discoveries made with spatial RNA seq? Or what are your favorite spatial rna seq papers?
Pls reski!
Pls reski!
September 26, 2026 at 7:23 PM
Are there key discoveries made with spatial RNA seq? Or what are your favorite spatial rna seq papers?
Pls reski!
Pls reski!
#kpopdemonhunters freefall seq I boarded, temp tracked to red by hyuna. I love how the final version came out 🥰
June 22, 2025 at 5:36 AM
#kpopdemonhunters freefall seq I boarded, temp tracked to red by hyuna. I love how the final version came out 🥰
3 part seq for @silverfang725.bsky.social had a lotta fun with this c:
March 9, 2026 at 2:01 PM
3 part seq for @silverfang725.bsky.social had a lotta fun with this c:
Out Now! Defining the essential genome of diverse phages with phage Tn-seq #MicroSky
Defining the essential genome of diverse phages with phage Tn-seq
Nature Microbiology, Published online: 25 September 2026; doi:10.1038/s41564-026-02486-1Phage Tn-seq uses Tn5 transposon mutagenesis with anti-CRISPR-based selection and deep sequencing as a method to generate unbiased, genome-wide mutations across diverse phages
go.nature.com
September 25, 2026 at 10:11 AM
Out Now! Defining the essential genome of diverse phages with phage Tn-seq #MicroSky
creamsicle seq 3/4 for tokswain :D
September 15, 2025 at 5:08 PM
creamsicle seq 3/4 for tokswain :D
seq ive been cooking up for a while + insane ass final edition alt.
December 20, 2024 at 8:30 PM
seq ive been cooking up for a while + insane ass final edition alt.
creamsicle seq 2/4 for tokswain :D
September 15, 2025 at 5:05 PM
creamsicle seq 2/4 for tokswain :D
creamsicle seq 4/4 for tokswain :D
September 15, 2025 at 5:10 PM
creamsicle seq 4/4 for tokswain :D
scRNA-seq has partly ruined murmurations for me...
Witness the mesmerizing murmuration of starlings in Italy, a stunning display of nature's coordination and beauty as they dance through the sky in unison.
April 23, 2026 at 9:30 AM
scRNA-seq has partly ruined murmurations for me...
Reset done - ready for new seq 🤖
August 16, 2026 at 8:00 PM
Reset done - ready for new seq 🤖
"Swapped"
TogaChako WG Seq Comm
TogaChako WG Seq Comm
April 20, 2026 at 6:47 PM
"Swapped"
TogaChako WG Seq Comm
TogaChako WG Seq Comm
The final version of our manuscript on TnSeq in bacteriophages (“HIDEN-SEQ”) is out today – if you have an interesting phage phenotype and want to know the underlying genetic basis, this one is for you! 1/4
September 25, 2026 at 10:19 AM
The final version of our manuscript on TnSeq in bacteriophages (“HIDEN-SEQ”) is out today – if you have an interesting phage phenotype and want to know the underlying genetic basis, this one is for you! 1/4
one really important fact that I think a lot of people who aren't super close to this stuff don't realize is that transformers/LLMs were NOT what OpenAI et. seq. (taking Anthropic as an OpenAI spinoff) were founded to work on, and were developed elsewhere. Caught them largely by surprise.
viewed from a long way out, you are going to make a collection of good and bad predictions. it's worth going back to 2011, 2012 and looking at _how_ they thought AI would work, how that affected their judgments about the risks, and how those judgments reattached themselves to new implementations.
September 25, 2026 at 1:24 PM
one really important fact that I think a lot of people who aren't super close to this stuff don't realize is that transformers/LLMs were NOT what OpenAI et. seq. (taking Anthropic as an OpenAI spinoff) were founded to work on, and were developed elsewhere. Caught them largely by surprise.
Out Now! Systematic mapping of bacteriophage gene essentiality with HIDEN-SEQ #MicroSky
Systematic mapping of bacteriophage gene essentiality with HIDEN-SEQ
Nature Microbiology, Published online: 25 September 2026; doi:10.1038/s41564-026-02455-8HIDEN-SEQ (hidden Acr-enabled transposon-insertion sequencing) is a transposon-insertion sequencing method for phages that systematically links their genes to selectable phenotypes.
go.nature.com
September 25, 2026 at 10:11 AM
Out Now! Systematic mapping of bacteriophage gene essentiality with HIDEN-SEQ #MicroSky
creamsicle seq 1/4 for tokswain :D
September 15, 2025 at 5:03 PM
creamsicle seq 1/4 for tokswain :D
What about BOB-Seq?
A cool new RNA-Seq library prep preprint clicked into place this week
omicsomics.blogspot.com/2026/09/what...
A cool new RNA-Seq library prep preprint clicked into place this week
omicsomics.blogspot.com/2026/09/what...
What About BOB-Seq?
An interesting new approach to short read RNA-Seq library preparation bobbed into view this week, using click chemistry to barcode samples b...
omicsomics.blogspot.com
September 27, 2026 at 3:32 AM
What about BOB-Seq?
A cool new RNA-Seq library prep preprint clicked into place this week
omicsomics.blogspot.com/2026/09/what...
A cool new RNA-Seq library prep preprint clicked into place this week
omicsomics.blogspot.com/2026/09/what...
Today we report single-cell APEX-seq (scAPEX-seq)—a method for unbiased mapping of subcellular transcriptomes at single-cell resolution. It reveals cell states invisible to standard scRNA-seq and identifies regulators of CAR T function that improve solid tumor killing.
tinyurl.com/32pf6b8p
tinyurl.com/32pf6b8p
March 18, 2026 at 11:40 AM
Today we report single-cell APEX-seq (scAPEX-seq)—a method for unbiased mapping of subcellular transcriptomes at single-cell resolution. It reveals cell states invisible to standard scRNA-seq and identifies regulators of CAR T function that improve solid tumor killing.
tinyurl.com/32pf6b8p
tinyurl.com/32pf6b8p
Excited to share this preprint that describes my latest work on using GPUs to accelerate processing of RNA-seq data.
The title says it all: "RNA-seq analysis in seconds using GPUs" now on biorxiv www.biorxiv.org/content/10.6... and github github.com/pachterlab/k...
Figure 1 shows they key result
The title says it all: "RNA-seq analysis in seconds using GPUs" now on biorxiv www.biorxiv.org/content/10.6... and github github.com/pachterlab/k...
Figure 1 shows they key result
March 6, 2026 at 7:32 PM
Excited to share this preprint that describes my latest work on using GPUs to accelerate processing of RNA-seq data.
The title says it all: "RNA-seq analysis in seconds using GPUs" now on biorxiv www.biorxiv.org/content/10.6... and github github.com/pachterlab/k...
Figure 1 shows they key result
The title says it all: "RNA-seq analysis in seconds using GPUs" now on biorxiv www.biorxiv.org/content/10.6... and github github.com/pachterlab/k...
Figure 1 shows they key result
Toony tummies
(Simple seq for nyasiamesestar
(Simple seq for nyasiamesestar
January 27, 2025 at 10:43 PM
Toony tummies
(Simple seq for nyasiamesestar
(Simple seq for nyasiamesestar
Defining the essential genome of diverse phages with phage Tn-seq | Nature Microbiology
Defining the essential genome of diverse phages with phage Tn-seq - Nature Microbiology
Phage Tn-seq uses Tn5 transposon mutagenesis with anti-CRISPR-based selection and deep sequencing as a method to generate unbiased, genome-wide mutations across diverse phages
www.nature.com
September 25, 2026 at 11:37 AM
Defining the essential genome of diverse phages with phage Tn-seq | Nature Microbiology
Here it is online, a week after the teaser talk at #EMBOBacNet... @natmicrobiol.nature.com by @humollidorentina.bsky.social et al from @aharms485.bsky.social
with @veeninglab.com
Systematic mapping of bacteriophage gene essentiality with HIDEN-SEQ
www.nature.com/articles/s41...
with @veeninglab.com
Systematic mapping of bacteriophage gene essentiality with HIDEN-SEQ
www.nature.com/articles/s41...
September 25, 2026 at 11:30 AM
Here it is online, a week after the teaser talk at #EMBOBacNet... @natmicrobiol.nature.com by @humollidorentina.bsky.social et al from @aharms485.bsky.social
with @veeninglab.com
Systematic mapping of bacteriophage gene essentiality with HIDEN-SEQ
www.nature.com/articles/s41...
with @veeninglab.com
Systematic mapping of bacteriophage gene essentiality with HIDEN-SEQ
www.nature.com/articles/s41...
#kottoc ALSO the cleo seq i've finally finished! someone tell that girl that the buffets dont close when the spring festival is over... 🤦♀️
March 24, 2025 at 11:09 AM
#kottoc ALSO the cleo seq i've finally finished! someone tell that girl that the buffets dont close when the spring festival is over... 🤦♀️
scATAC-seq generates more accurate and complete regulatory maps than bulk ATAC-seq
www.nature.com/articles/s41...
www.nature.com/articles/s41...
scATAC-seq generates more accurate and complete regulatory maps than bulk ATAC-seq - Scientific Reports
Scientific Reports - scATAC-seq generates more accurate and complete regulatory maps than bulk ATAC-seq
www.nature.com
February 1, 2025 at 11:42 PM
scATAC-seq generates more accurate and complete regulatory maps than bulk ATAC-seq
www.nature.com/articles/s41...
www.nature.com/articles/s41...