Spatial Transcript Omics DataBase (STOmics DB) is a comprehensive repository of literature and Datasets related to spatial transcriptomics topics, and provides convenient tools for Data analysis, search and visualization. db.cngb.org/stomics/
July 14, 2025 at 2:15 PM
Spatial Transcript Omics DataBase (STOmics DB) is a comprehensive repository of literature and Datasets related to spatial transcriptomics topics, and provides convenient tools for Data analysis, search and visualization. db.cngb.org/stomics/
STOmicsDB
#SpatialTranscriptomics repository
Coding-free visualization & re-analysis of published ST datasets (if you have a specific question)
361 datasets 128 tissues 17 species
db.cngb.org/stomics/
@narjournal.bsky.social 2023
academic.oup.com/nar/article/...
#SpatialTranscriptomics repository
Coding-free visualization & re-analysis of published ST datasets (if you have a specific question)
361 datasets 128 tissues 17 species
db.cngb.org/stomics/
@narjournal.bsky.social 2023
academic.oup.com/nar/article/...
July 18, 2025 at 12:23 PM
STOmicsDB
#SpatialTranscriptomics repository
Coding-free visualization & re-analysis of published ST datasets (if you have a specific question)
361 datasets 128 tissues 17 species
db.cngb.org/stomics/
@narjournal.bsky.social 2023
academic.oup.com/nar/article/...
#SpatialTranscriptomics repository
Coding-free visualization & re-analysis of published ST datasets (if you have a specific question)
361 datasets 128 tissues 17 species
db.cngb.org/stomics/
@narjournal.bsky.social 2023
academic.oup.com/nar/article/...
@MGI_Tech, not on Bluesky, released an Intro 2025 Video with their different offerings, and the STOmics product showed as a sizeable benchtop instrument, which presumably automates the process of handling the sample preparation of biopsies for Spatial Omics assays.
July 29, 2025 at 9:39 AM
@MGI_Tech, not on Bluesky, released an Intro 2025 Video with their different offerings, and the STOmics product showed as a sizeable benchtop instrument, which presumably automates the process of handling the sample preparation of biopsies for Spatial Omics assays.
MGI Tech Unveils Go Spatial in Europe, Boosting Spatial Transcriptomics Network#Italy#Milan#MGI_Tech#STOmics#Go_Spatial
MGI Tech Unveils Go Spatial in Europe, Boosting Spatial Transcriptomics Network
MGI Tech has launched Go Spatial, revolutionizing spatial transcriptomics in Europe and partnering with Omics Empower for enhanced services.
third-news.com
July 1, 2026 at 3:36 PM
MGI Tech Unveils Go Spatial in Europe, Boosting Spatial Transcriptomics Network#Italy#Milan#MGI_Tech#STOmics#Go_Spatial
What an incredible time at the Oz Single Cell Conference 2025! 🧬
Thanks to everyone who visited our stand. We’re excited to support your journey in single-cell research.
Proud Partners:
MGI
STOmics
@parse.bsky.social
#SingleCell #EnablingDiscovery
Thanks to everyone who visited our stand. We’re excited to support your journey in single-cell research.
Proud Partners:
MGI
STOmics
@parse.bsky.social
#SingleCell #EnablingDiscovery
May 26, 2025 at 3:59 AM
What an incredible time at the Oz Single Cell Conference 2025! 🧬
Thanks to everyone who visited our stand. We’re excited to support your journey in single-cell research.
Proud Partners:
MGI
STOmics
@parse.bsky.social
#SingleCell #EnablingDiscovery
Thanks to everyone who visited our stand. We’re excited to support your journey in single-cell research.
Proud Partners:
MGI
STOmics
@parse.bsky.social
#SingleCell #EnablingDiscovery
Mark your calendar for @wehi-research.bsky.social Spatial Symposium!
Decode Science team, Ebru & Stella, are going to the conference to discuss spatial biology and genomics solutions from our partners: MGI, STOmics & @parse.bsky.social
#Genomics #EnablingDiscovery
Decode Science team, Ebru & Stella, are going to the conference to discuss spatial biology and genomics solutions from our partners: MGI, STOmics & @parse.bsky.social
#Genomics #EnablingDiscovery
June 2, 2025 at 11:04 PM
Mark your calendar for @wehi-research.bsky.social Spatial Symposium!
Decode Science team, Ebru & Stella, are going to the conference to discuss spatial biology and genomics solutions from our partners: MGI, STOmics & @parse.bsky.social
#Genomics #EnablingDiscovery
Decode Science team, Ebru & Stella, are going to the conference to discuss spatial biology and genomics solutions from our partners: MGI, STOmics & @parse.bsky.social
#Genomics #EnablingDiscovery
We are happy to welcome STOmics as Gold sponsor for #NeuroFrance2025
If you wish to know more about Stomics, please visit their website: en.stomics.tech
➕ Further info about NeuroFrance 2025: www.neurosciences.asso.fr/SN25
If you wish to know more about Stomics, please visit their website: en.stomics.tech
➕ Further info about NeuroFrance 2025: www.neurosciences.asso.fr/SN25
March 31, 2025 at 7:41 AM
We are happy to welcome STOmics as Gold sponsor for #NeuroFrance2025
If you wish to know more about Stomics, please visit their website: en.stomics.tech
➕ Further info about NeuroFrance 2025: www.neurosciences.asso.fr/SN25
If you wish to know more about Stomics, please visit their website: en.stomics.tech
➕ Further info about NeuroFrance 2025: www.neurosciences.asso.fr/SN25
Grateful to everyone who joined us @sahmri.bsky.social for the Festival of Multiomics #MGIFOMO2025. Inspiring talks by Fernando Rossello, Adrienne Sullivan, Chris Chen, and our STOmics panel. Exciting to see the roadmap for #Stereoseq. #MultiOmics #SpatialOmics @decodescience.bsky.social
June 3, 2025 at 12:56 AM
Grateful to everyone who joined us @sahmri.bsky.social for the Festival of Multiomics #MGIFOMO2025. Inspiring talks by Fernando Rossello, Adrienne Sullivan, Chris Chen, and our STOmics panel. Exciting to see the roadmap for #Stereoseq. #MultiOmics #SpatialOmics @decodescience.bsky.social
We're diving deep into the world of plant biology by studying the liverwort Apopellia endiviifolia.
Our team will be using the cutting-edge Stereo-seq technology from Stomics to explore its spatial transcriptomics.
#Bryology #Botany #UWM #Stomics #Transcriptomics #Apopellia #liverworts
Our team will be using the cutting-edge Stereo-seq technology from Stomics to explore its spatial transcriptomics.
#Bryology #Botany #UWM #Stomics #Transcriptomics #Apopellia #liverworts
July 29, 2025 at 5:00 AM
We're diving deep into the world of plant biology by studying the liverwort Apopellia endiviifolia.
Our team will be using the cutting-edge Stereo-seq technology from Stomics to explore its spatial transcriptomics.
#Bryology #Botany #UWM #Stomics #Transcriptomics #Apopellia #liverworts
Our team will be using the cutting-edge Stereo-seq technology from Stomics to explore its spatial transcriptomics.
#Bryology #Botany #UWM #Stomics #Transcriptomics #Apopellia #liverworts
We’re heading to QRW 2025!
Join Decode Science at Booth 30 for:
• Innovations from @twistbioscience.com, STOmics, @parse.bsky.social & Quanterix
• Giveaways + free coffee
• Our Single Cell Workshop – One Solution with Decode
#SingleCell #SpatialBiology #EnablingDiscovery
Join Decode Science at Booth 30 for:
• Innovations from @twistbioscience.com, STOmics, @parse.bsky.social & Quanterix
• Giveaways + free coffee
• Our Single Cell Workshop – One Solution with Decode
#SingleCell #SpatialBiology #EnablingDiscovery
August 26, 2025 at 11:22 PM
We’re heading to QRW 2025!
Join Decode Science at Booth 30 for:
• Innovations from @twistbioscience.com, STOmics, @parse.bsky.social & Quanterix
• Giveaways + free coffee
• Our Single Cell Workshop – One Solution with Decode
#SingleCell #SpatialBiology #EnablingDiscovery
Join Decode Science at Booth 30 for:
• Innovations from @twistbioscience.com, STOmics, @parse.bsky.social & Quanterix
• Giveaways + free coffee
• Our Single Cell Workshop – One Solution with Decode
#SingleCell #SpatialBiology #EnablingDiscovery
Oz Single Cell Conference is here & we have much to talk about -
STOmics – High-res spatial transcriptomics
MGI – Sequencing for precision diagnostics
@parse.bsky.social – High-throughput single-cell profiling
#Genomics #SingleCell #OzSingleCell #EnablingDiscovery
STOmics – High-res spatial transcriptomics
MGI – Sequencing for precision diagnostics
@parse.bsky.social – High-throughput single-cell profiling
#Genomics #SingleCell #OzSingleCell #EnablingDiscovery
May 18, 2025 at 11:25 PM
Oz Single Cell Conference is here & we have much to talk about -
STOmics – High-res spatial transcriptomics
MGI – Sequencing for precision diagnostics
@parse.bsky.social – High-throughput single-cell profiling
#Genomics #SingleCell #OzSingleCell #EnablingDiscovery
STOmics – High-res spatial transcriptomics
MGI – Sequencing for precision diagnostics
@parse.bsky.social – High-throughput single-cell profiling
#Genomics #SingleCell #OzSingleCell #EnablingDiscovery
Excited to announce IPBLN Genomics Core Facility as STOmics' CSP in Spain! This partnership will expand access to Stereo-seq spatial transcriptomics across the region, enabling unbiased discovery to answer biological questions in scientific research and clinical applications.
@csic.es
@csic.es
February 3, 2026 at 11:35 AM
Excited to announce IPBLN Genomics Core Facility as STOmics' CSP in Spain! This partnership will expand access to Stereo-seq spatial transcriptomics across the region, enabling unbiased discovery to answer biological questions in scientific research and clinical applications.
@csic.es
@csic.es
Library size in #SpatialTranscriptomics (Visium/Xenium/STOmics/CosMx) could reflect biological variability
CommonscRNA-seq normalization methods may negatively affect spatial domain identification
18647 method/parameter combos
#GenomeBiology 2024
genomebiology.biomedcentral.com/articles/10....
CommonscRNA-seq normalization methods may negatively affect spatial domain identification
18647 method/parameter combos
#GenomeBiology 2024
genomebiology.biomedcentral.com/articles/10....
April 29, 2024 at 11:46 AM
Library size in #SpatialTranscriptomics (Visium/Xenium/STOmics/CosMx) could reflect biological variability
CommonscRNA-seq normalization methods may negatively affect spatial domain identification
18647 method/parameter combos
#GenomeBiology 2024
genomebiology.biomedcentral.com/articles/10....
CommonscRNA-seq normalization methods may negatively affect spatial domain identification
18647 method/parameter combos
#GenomeBiology 2024
genomebiology.biomedcentral.com/articles/10....
oin my talk at the AI2EAR Seminar Series
April 16 | 7:00 am ET
Topics:
• Dual host–microbe transcription mapping (soybean nodules)
• Dark-induced senescence in Arabidopsis
• 3/4-D spatial biology (leaf & root, #STOmics)
Register: scan QR code or ai2ear.wordpress.ncsu.edu/online-seminar/
April 16 | 7:00 am ET
Topics:
• Dual host–microbe transcription mapping (soybean nodules)
• Dark-induced senescence in Arabidopsis
• 3/4-D spatial biology (leaf & root, #STOmics)
Register: scan QR code or ai2ear.wordpress.ncsu.edu/online-seminar/
April 13, 2026 at 11:07 AM
oin my talk at the AI2EAR Seminar Series
April 16 | 7:00 am ET
Topics:
• Dual host–microbe transcription mapping (soybean nodules)
• Dark-induced senescence in Arabidopsis
• 3/4-D spatial biology (leaf & root, #STOmics)
Register: scan QR code or ai2ear.wordpress.ncsu.edu/online-seminar/
April 16 | 7:00 am ET
Topics:
• Dual host–microbe transcription mapping (soybean nodules)
• Dark-induced senescence in Arabidopsis
• 3/4-D spatial biology (leaf & root, #STOmics)
Register: scan QR code or ai2ear.wordpress.ncsu.edu/online-seminar/
We compare strengths & limitations of key platforms: 10x Genomics Chromium, Drop-seq (early pioneer in droplet-based technology), Smart-seq(2) & Cel-seq(2): Specialized plate-based methods, Visium, Stereo-seq (STOmics), Slide-seqV2, MERFISH, and Xenium. 5/5
February 11, 2025 at 2:58 AM
We compare strengths & limitations of key platforms: 10x Genomics Chromium, Drop-seq (early pioneer in droplet-based technology), Smart-seq(2) & Cel-seq(2): Specialized plate-based methods, Visium, Stereo-seq (STOmics), Slide-seqV2, MERFISH, and Xenium. 5/5
🚨 SAGC STOmics Spatial Transcriptomics Services - EOFY Promo!
If you are interested in #Stereoseq now is the time to contact us.
✅ DIY and full-service options
✅ Single-cell resolution (FF & FFPE)
✅ No equipment needed
More Info 👉 hubs.ly/Q03rp0Gh0
@decodescience.bsky.social
If you are interested in #Stereoseq now is the time to contact us.
✅ DIY and full-service options
✅ Single-cell resolution (FF & FFPE)
✅ No equipment needed
More Info 👉 hubs.ly/Q03rp0Gh0
@decodescience.bsky.social
June 10, 2025 at 3:59 AM
🚨 SAGC STOmics Spatial Transcriptomics Services - EOFY Promo!
If you are interested in #Stereoseq now is the time to contact us.
✅ DIY and full-service options
✅ Single-cell resolution (FF & FFPE)
✅ No equipment needed
More Info 👉 hubs.ly/Q03rp0Gh0
@decodescience.bsky.social
If you are interested in #Stereoseq now is the time to contact us.
✅ DIY and full-service options
✅ Single-cell resolution (FF & FFPE)
✅ No equipment needed
More Info 👉 hubs.ly/Q03rp0Gh0
@decodescience.bsky.social
🌱 Upcoming Seminar @Waite Research Institute 🌾
Spatial Transcriptomics in Cereal Crops
Dr. Scott Boden will discuss how STOmics reveals genetic regulation in cereals, offering insights into plant development, flowering time, and yield.
📅 Mar 20 | 🕒 12–1 pm
📍 SARDI Auditorium
🔗 bit.ly/4gXpSXV
Spatial Transcriptomics in Cereal Crops
Dr. Scott Boden will discuss how STOmics reveals genetic regulation in cereals, offering insights into plant development, flowering time, and yield.
📅 Mar 20 | 🕒 12–1 pm
📍 SARDI Auditorium
🔗 bit.ly/4gXpSXV
March 12, 2025 at 8:46 PM
🌱 Upcoming Seminar @Waite Research Institute 🌾
Spatial Transcriptomics in Cereal Crops
Dr. Scott Boden will discuss how STOmics reveals genetic regulation in cereals, offering insights into plant development, flowering time, and yield.
📅 Mar 20 | 🕒 12–1 pm
📍 SARDI Auditorium
🔗 bit.ly/4gXpSXV
Spatial Transcriptomics in Cereal Crops
Dr. Scott Boden will discuss how STOmics reveals genetic regulation in cereals, offering insights into plant development, flowering time, and yield.
📅 Mar 20 | 🕒 12–1 pm
📍 SARDI Auditorium
🔗 bit.ly/4gXpSXV
We’re excited to bring Stereo-seq LCD to #SFN2025! Stop by Booth #3419 to explore how the new Stereo-seq Large Chip Design (LCD) expands spatial transcriptomics to multi-centimeter scales.
www.completegenomics.com/stereo-seq-t...
#SpatialTranscriptomics #STOmics #BrainMapping #LCD
www.completegenomics.com/stereo-seq-t...
#SpatialTranscriptomics #STOmics #BrainMapping #LCD
Stereo-seq FF LCD Brochure - Complete Genomics
Stereo-seq Large Chip Design (LCD) Please fill up the form to receive your guide today!
www.completegenomics.com
November 17, 2025 at 4:38 PM
We’re excited to bring Stereo-seq LCD to #SFN2025! Stop by Booth #3419 to explore how the new Stereo-seq Large Chip Design (LCD) expands spatial transcriptomics to multi-centimeter scales.
www.completegenomics.com/stereo-seq-t...
#SpatialTranscriptomics #STOmics #BrainMapping #LCD
www.completegenomics.com/stereo-seq-t...
#SpatialTranscriptomics #STOmics #BrainMapping #LCD
#Sainsc is a cell-segmentation-free tool to create cell-type maps.
Why segmentation-free? Cell segmentation is hard, and if not done well it can ruin expression profiles, even miss cells.
Sainsc is fast! Get first insights in <5 min for #Xenium, #MERSCOPE, and <1 hr for #STomics, #Stereo-seq.
Why segmentation-free? Cell segmentation is hard, and if not done well it can ruin expression profiles, even miss cells.
Sainsc is fast! Get first insights in <5 min for #Xenium, #MERSCOPE, and <1 hr for #STomics, #Stereo-seq.
November 29, 2024 at 10:29 AM
#Sainsc is a cell-segmentation-free tool to create cell-type maps.
Why segmentation-free? Cell segmentation is hard, and if not done well it can ruin expression profiles, even miss cells.
Sainsc is fast! Get first insights in <5 min for #Xenium, #MERSCOPE, and <1 hr for #STomics, #Stereo-seq.
Why segmentation-free? Cell segmentation is hard, and if not done well it can ruin expression profiles, even miss cells.
Sainsc is fast! Get first insights in <5 min for #Xenium, #MERSCOPE, and <1 hr for #STomics, #Stereo-seq.
Back to the STOmics instrument, with a different angle, it looks like a mid-size liquid handling unit, with about 2-3 rows of 96-well plate sized deck, between 5-6 in length.
July 29, 2025 at 9:44 AM
Back to the STOmics instrument, with a different angle, it looks like a mid-size liquid handling unit, with about 2-3 rows of 96-well plate sized deck, between 5-6 in length.
Our sponsors: STOmics @vectorbuilder.bsky.social @10xgenomics.bsky.social @neuromarseille.bsky.social BIOSEB @brukercorporation.bsky.social Delta Technologies @ebrains.bsky.social Innoprot, Harvard Bioscience, Proteintech, Scientifica, Scop Pro
May 20, 2025 at 8:56 AM
Our sponsors: STOmics @vectorbuilder.bsky.social @10xgenomics.bsky.social @neuromarseille.bsky.social BIOSEB @brukercorporation.bsky.social Delta Technologies @ebrains.bsky.social Innoprot, Harvard Bioscience, Proteintech, Scientifica, Scop Pro
I’m pleased to present in the AI2EAR Seminar Series on Spatial Biology in Plant–Microbe Interactions and Developmental Processes. #STOmics
🗓 April 16, 2026
🕖 7:00 AM EST
📍 Virtual (Zoom)
Looking forward to it. Register on this website or scan the QR code. ai2ear.wordpress.ncsu.edu/online-semin...
🗓 April 16, 2026
🕖 7:00 AM EST
📍 Virtual (Zoom)
Looking forward to it. Register on this website or scan the QR code. ai2ear.wordpress.ncsu.edu/online-semin...
March 30, 2026 at 11:22 AM
I’m pleased to present in the AI2EAR Seminar Series on Spatial Biology in Plant–Microbe Interactions and Developmental Processes. #STOmics
🗓 April 16, 2026
🕖 7:00 AM EST
📍 Virtual (Zoom)
Looking forward to it. Register on this website or scan the QR code. ai2ear.wordpress.ncsu.edu/online-semin...
🗓 April 16, 2026
🕖 7:00 AM EST
📍 Virtual (Zoom)
Looking forward to it. Register on this website or scan the QR code. ai2ear.wordpress.ncsu.edu/online-semin...
📢 Join us for STOmics – Mastering Spatial Transcriptomics: An End-to-End Analysis Workshop
📍 SAHMRI | 🗓️ Tues 11 Nov | 🕝 2:30–5:00 PM
A 2.5-hour hands-on spatial data analysis session: from raw data preprocessing to advanced custom analysis.
🔗 Spots are limited – RSVP now!
rb.gy/hr4mg4
📍 SAHMRI | 🗓️ Tues 11 Nov | 🕝 2:30–5:00 PM
A 2.5-hour hands-on spatial data analysis session: from raw data preprocessing to advanced custom analysis.
🔗 Spots are limited – RSVP now!
rb.gy/hr4mg4
November 4, 2025 at 9:06 PM
📢 Join us for STOmics – Mastering Spatial Transcriptomics: An End-to-End Analysis Workshop
📍 SAHMRI | 🗓️ Tues 11 Nov | 🕝 2:30–5:00 PM
A 2.5-hour hands-on spatial data analysis session: from raw data preprocessing to advanced custom analysis.
🔗 Spots are limited – RSVP now!
rb.gy/hr4mg4
📍 SAHMRI | 🗓️ Tues 11 Nov | 🕝 2:30–5:00 PM
A 2.5-hour hands-on spatial data analysis session: from raw data preprocessing to advanced custom analysis.
🔗 Spots are limited – RSVP now!
rb.gy/hr4mg4