December 29, 2024 at 7:10 PM
Trying to find my way around Bluesky and still posting to ‚X‘ etc any tips @anshulkundaje.bsky.social or others? Greatly appreciated!
November 18, 2024 at 6:02 PM
Thank you all the new #Bluesky followers! #BlueSky #biotech #NextGenSequencing #NextGenProteomics #SingleCell #SpatialBiology #MultiOmics #LiquidBiopsy #MCED
February 3, 2025 at 4:59 PM
Thank you all the new #Bluesky followers! #BlueSky #biotech #NextGenSequencing #NextGenProteomics #SingleCell #SpatialBiology #MultiOmics #LiquidBiopsy #MCED
Welcome to the feed on all things SingleCell genomics!
Anyone can post to this feed: tag with #SingleCell
(also picks up posts with #transcriptomics | #multiomics)
Please use Alt text in images and CamelCase tags. ✌️🚀
Anyone can post to this feed: tag with #SingleCell
(also picks up posts with #transcriptomics | #multiomics)
Please use Alt text in images and CamelCase tags. ✌️🚀
November 13, 2024 at 9:03 PM
Welcome to the feed on all things SingleCell genomics!
Anyone can post to this feed: tag with #SingleCell
(also picks up posts with #transcriptomics | #multiomics)
Please use Alt text in images and CamelCase tags. ✌️🚀
Anyone can post to this feed: tag with #SingleCell
(also picks up posts with #transcriptomics | #multiomics)
Please use Alt text in images and CamelCase tags. ✌️🚀
Luxar is made for 3D UMAPs. 500K Tabula Sapiens cells from 24 tissues as points coloured by organ, with a legend in the scene; hovering a cell names its cell type and tissue. Millions of points stay interactive. #SingleCell
Demo: demos.luxarviewer.dev/d/tabula_sa...
Demo: demos.luxarviewer.dev/d/tabula_sa...
September 23, 2026 at 8:47 AM
Luxar is made for 3D UMAPs. 500K Tabula Sapiens cells from 24 tissues as points coloured by organ, with a legend in the scene; hovering a cell names its cell type and tissue. Millions of points stay interactive. #SingleCell
Demo: demos.luxarviewer.dev/d/tabula_sa...
Demo: demos.luxarviewer.dev/d/tabula_sa...
January 3, 2025 at 8:22 PM
Gravlax: an annotation-independent molecular evidence archive for single-cell RNA-seq #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.18.752708v1
https://www.biorxiv.org/content/10.64898/2026.09.18.752708v1
September 21, 2026 at 4:00 PM
Gravlax: an annotation-independent molecular evidence archive for single-cell RNA-seq #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.18.752708v1
https://www.biorxiv.org/content/10.64898/2026.09.18.752708v1
Finally made the jump from the dumpster fire to hopefully bluer skies. Here for all the science! #neuroscience #neuroskyence #epigenetics #singlecell #isthishowitworks
September 12, 2023 at 6:17 PM
Finally made the jump from the dumpster fire to hopefully bluer skies. Here for all the science! #neuroscience #neuroskyence #epigenetics #singlecell #isthishowitworks
New collaboration between @10xgenomics.bsky.social and Oxford @nanoporetech.com on #SingleCell and #SpatialOmics NGS and software
We're expanding our collaboration with @10xgenomics.bsky.social to enable seamless compatibility between their latest GEM-X chemistry, bringing more accurate, cost-effective, and accessible insights to #singlecell and spatial #transcriptomics research.
Learn more: nanoporetech.com/news/oxford-...
Learn more: nanoporetech.com/news/oxford-...
February 24, 2025 at 3:32 PM
New collaboration between @10xgenomics.bsky.social and Oxford @nanoporetech.com on #SingleCell and #SpatialOmics NGS and software
Deconvolution of the mechanisms of T cell drug response in multiple myeloma induction therapy #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.15.751861v1
https://www.biorxiv.org/content/10.64898/2026.09.15.751861v1
September 22, 2026 at 10:01 PM
Deconvolution of the mechanisms of T cell drug response in multiple myeloma induction therapy #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.15.751861v1
https://www.biorxiv.org/content/10.64898/2026.09.15.751861v1
Division of labor during bacterial warfare #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.21.753294v1
https://www.biorxiv.org/content/10.64898/2026.09.21.753294v1
September 24, 2026 at 7:00 PM
Division of labor during bacterial warfare #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.21.753294v1
https://www.biorxiv.org/content/10.64898/2026.09.21.753294v1
In #SingleCell and #SpatialOmics news, Takara Bio US buys Curio Bio.
January 15, 2025 at 8:20 PM
In #SingleCell and #SpatialOmics news, Takara Bio US buys Curio Bio.
Targeted single-nucleus sequencing of 39,800 neurons reveals extensive low-frequency somatic variants #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.21.753260v1
https://www.biorxiv.org/content/10.64898/2026.09.21.753260v1
September 23, 2026 at 7:01 PM
Targeted single-nucleus sequencing of 39,800 neurons reveals extensive low-frequency somatic variants #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.64898/2026.09.21.753260v1
https://www.biorxiv.org/content/10.64898/2026.09.21.753260v1
Excited to share that I will be opening my lab this fall at the @weizmanninstitute.bsky.social in the Department of Plant & Environmental Sciences!
I am looking for postdocs interested in plant biology, stress biology, and single-cell technologies.
#PlantBiology #SingleCell #Epigenomics #Postdoc
I am looking for postdocs interested in plant biology, stress biology, and single-cell technologies.
#PlantBiology #SingleCell #Epigenomics #Postdoc
May 11, 2026 at 11:19 PM
Excited to share that I will be opening my lab this fall at the @weizmanninstitute.bsky.social in the Department of Plant & Environmental Sciences!
I am looking for postdocs interested in plant biology, stress biology, and single-cell technologies.
#PlantBiology #SingleCell #Epigenomics #Postdoc
I am looking for postdocs interested in plant biology, stress biology, and single-cell technologies.
#PlantBiology #SingleCell #Epigenomics #Postdoc
I've added @rongfan8.bsky.social 's Lab spatial-ATAC-RNA-seq and spatial-CUT&Tag-RNA-seq to the list of #SingleCell and #SpatialBiology #methods #SingleCell #Spatial #Method bit.ly/scmethodstable
April 14, 2025 at 8:49 AM
I've added @rongfan8.bsky.social 's Lab spatial-ATAC-RNA-seq and spatial-CUT&Tag-RNA-seq to the list of #SingleCell and #SpatialBiology #methods #SingleCell #Spatial #Method bit.ly/scmethodstable
Join us to connect with the vibrant #singlecell community.
📢Register for the #ISCO'25 Conference "Innovations in #SingleCell #OMICS" in Berlin!
🗓️ 12-13 May 2025
🎤 Fantastic Keynote and Invited Speakers
🫵🏿 Many slots for talks: submit your abstract
🔗http://isco-conference.eu
Please spread the word!
📢Register for the #ISCO'25 Conference "Innovations in #SingleCell #OMICS" in Berlin!
🗓️ 12-13 May 2025
🎤 Fantastic Keynote and Invited Speakers
🫵🏿 Many slots for talks: submit your abstract
🔗http://isco-conference.eu
Please spread the word!
January 31, 2025 at 10:29 AM
Join us to connect with the vibrant #singlecell community.
📢Register for the #ISCO'25 Conference "Innovations in #SingleCell #OMICS" in Berlin!
🗓️ 12-13 May 2025
🎤 Fantastic Keynote and Invited Speakers
🫵🏿 Many slots for talks: submit your abstract
🔗http://isco-conference.eu
Please spread the word!
📢Register for the #ISCO'25 Conference "Innovations in #SingleCell #OMICS" in Berlin!
🗓️ 12-13 May 2025
🎤 Fantastic Keynote and Invited Speakers
🫵🏿 Many slots for talks: submit your abstract
🔗http://isco-conference.eu
Please spread the word!
👋Our March issue's out!
Cover: Introducing #blebbisomes
👉🏼Review on #mitochondria #genetics
👉🏼Perspective on #MachineLearning and #SingleCell analyses
🔬 #organelles #autophagy #cancer #autophagy #endocytosis #EmbryoPatterning & more!
www.nature.com/ncb/volumes/...
Cover: Introducing #blebbisomes
👉🏼Review on #mitochondria #genetics
👉🏼Perspective on #MachineLearning and #SingleCell analyses
🔬 #organelles #autophagy #cancer #autophagy #endocytosis #EmbryoPatterning & more!
www.nature.com/ncb/volumes/...
March 17, 2025 at 1:24 PM
👋Our March issue's out!
Cover: Introducing #blebbisomes
👉🏼Review on #mitochondria #genetics
👉🏼Perspective on #MachineLearning and #SingleCell analyses
🔬 #organelles #autophagy #cancer #autophagy #endocytosis #EmbryoPatterning & more!
www.nature.com/ncb/volumes/...
Cover: Introducing #blebbisomes
👉🏼Review on #mitochondria #genetics
👉🏼Perspective on #MachineLearning and #SingleCell analyses
🔬 #organelles #autophagy #cancer #autophagy #endocytosis #EmbryoPatterning & more!
www.nature.com/ncb/volumes/...
In #SingleCell news, Scale Bio announced a new QuantumScale line of products, reaching 4 million cells per assay.
February 25, 2025 at 9:13 AM
In #SingleCell news, Scale Bio announced a new QuantumScale line of products, reaching 4 million cells per assay.
When you get to be your own caricature!! Grateful to be in #oz sharing science with #friends. For those missing out #multiomics2024 is where #singlecell #spatial #omics #immunology #oncology and #precisionmedicine is where it’s at🥳
December 1, 2024 at 6:29 AM
When you get to be your own caricature!! Grateful to be in #oz sharing science with #friends. For those missing out #multiomics2024 is where #singlecell #spatial #omics #immunology #oncology and #precisionmedicine is where it’s at🥳
I made a feed to follow all the action in #SingleCell genomics. May be of interest to subsets of communities at #genomics, #stats, #MLSky, 🧬, 🧪 and more
Pls RP / pin to find all the fun #SingleCell folks. I know you're out there!
bsky.app/profile/adam...
Pls RP / pin to find all the fun #SingleCell folks. I know you're out there!
bsky.app/profile/adam...
November 13, 2024 at 9:23 PM
I made a feed to follow all the action in #SingleCell genomics. May be of interest to subsets of communities at #genomics, #stats, #MLSky, 🧬, 🧪 and more
Pls RP / pin to find all the fun #SingleCell folks. I know you're out there!
bsky.app/profile/adam...
Pls RP / pin to find all the fun #SingleCell folks. I know you're out there!
bsky.app/profile/adam...
scRNA-seq data sets exploding in number and size - check out scanpy & anndata for >1b cells: new experimental update includes APIs for scaling with dask from anndata, integrated with lots of scanpy and rapids-singlecell functions.
gist.github.com/ilan-gold/98...
gist.github.com/ilan-gold/98...
December 11, 2024 at 3:48 PM
scRNA-seq data sets exploding in number and size - check out scanpy & anndata for >1b cells: new experimental update includes APIs for scaling with dask from anndata, integrated with lots of scanpy and rapids-singlecell functions.
gist.github.com/ilan-gold/98...
gist.github.com/ilan-gold/98...
A big thing I have been wondering recently: how to predict cell cycle phase from scATAC data. This seems like important progress in the underlying basic science relevant to that question.
The latest from our group, led by Megan Ostrowski and @martyyang.bsky.social, is now published in final form (www.cell.com/cell/fulltex...! Many thanks to our excellent peer reviewers for suggesting several experiments (including CAF-1 perturbation) to really improve the study =) #epigenetics
November 15, 2024 at 5:30 PM
Mapping enhancer-gene regulatory interactions from single-cell data https://www.biorxiv.org/content/10.1101/2024.11.23.624931v1
Mapping enhancer-gene regulatory interactions from single-cell data https://www.biorxiv.org/content/10.1101/2024.11.23.624931v1
Mapping enhancers and their target genes in specific cell types is crucial for understanding gene re
www.biorxiv.org
November 24, 2024 at 3:08 PM
Anyone interested in #singlecell and #spatialtranscriptomics, join our conversation. go.bsky.app/UfPCLPW
November 16, 2024 at 8:49 PM
Anyone interested in #singlecell and #spatialtranscriptomics, join our conversation. go.bsky.app/UfPCLPW
MCGAE: unraveling tumor invasion through integrated multimodal spatial transcriptomics #SingleCell 🧬🖥️ academic.oup.com/bib/article/...
MCGAE: unraveling tumor invasion through integrated multimodal spatial transcriptomics
Abstract. Spatially Resolved Transcriptomics (SRT) serves as a cornerstone in biomedical research, revealing the heterogeneity of tissue microenvironments.
academic.oup.com
November 23, 2024 at 10:04 AM
MCGAE: unraveling tumor invasion through integrated multimodal spatial transcriptomics #SingleCell 🧬🖥️ academic.oup.com/bib/article/...