#alphafind
LightNews LightNews
biorxiv-bioinfo.bsky.social
AlphaFind: Discover structure similarity across the entire known proteome https://www.biorxiv.org/content/10.1101/2024.02.15.580465v1
AlphaFind: Discover structure similarity across the entire known proteome https://www.biorxiv.org/content/10.1101/2024.02.15.580465v1
AlphaFind is a web-based search engine that provides fast structure-based retrieval in the entire se
www.biorxiv.org
February 18, 2024 at 10:48 PM
jcamthrash.bsky.social
AlphaFind: discover structure similarity across the proteome in AlphaFold DB academic.oup.com/nar/advance-...
AlphaFind: discover structure similarity across the proteome in AlphaFold DB
Abstract. AlphaFind is a web-based search engine that provides fast structure-based retrieval in the entire set of AlphaFold DB structures. Unlike other pr
academic.oup.com
May 15, 2024 at 12:54 PM
pastelbio.bsky.social
AlphaFind: Discover structure similarity across the entire known proteome www.biorxiv.org/cont...

---
#proteomics #prot-preprint
February 19, 2024 at 8:40 AM
kmichie.bsky.social
Cool! Looks like this is coming out in NAR.

Alphafind. 🧬🧶

No excuses any more for not knowing where you can find you fav protein…

www.biorxiv.org/content/10.1...
AlphaFind: Discover structure similarity across the entire known proteome
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution
www.biorxiv.org
February 19, 2024 at 10:33 PM
stephenturner.us
AlphaFind: Discover structure similarity across the entire known proteome www.biorxiv.org/content/10.1... 🧬🖥️
AlphaFind: Discover structure similarity across the entire known proteome
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution
www.biorxiv.org
February 23, 2024 at 4:16 PM
bffo.bsky.social
In the @narjournal.bsky.social #NARWebServicesIssue | AlphaFind v2: similarity search in AlphaFold DB and TED domains across structural contexts | #Bioinformatics #WebServer #OpenScience #Database #Proteomics #AlphaFold | 🧬 🖥️ 🧪 🔓
⬇️
academic.oup.com/nar/advance-...
AlphaFind v2: similarity search in AlphaFold DB and TED domains across structural contexts
Abstract. The availability of large-scale protein structure collections enables structure-based analysis of their function and evolution beyond what is pos
academic.oup.com
April 25, 2026 at 4:15 PM
schiracha.bsky.social
Anyone working on #protein #evolution or #orphan #pfam please hmu. DM here or google me and email me. I need advice, discussion, software testing?
#FoldSeek #AlphaFold #AlphaFind #BLAST #homology #biology #structbio #structuralbiology #bioinformatics #hps
April 20, 2026 at 12:59 PM
biorxivpreprint.bsky.social
AlphaFind: Discover structure similarity across the entire known proteome https://www.biorxiv.org/content/10.1101/2024.02.15.580465v1
AlphaFind: Discover structure similarity across the entire known proteome https://www.biorxiv.org/content/10.1101/2024.02.15.580465v1
AlphaFind is a web-based search engine that provides fast structure-based retrieval in the entire se
www.biorxiv.org
February 18, 2024 at 10:48 PM
pastelbio.bsky.social
AlphaFind: discover structure similarity across the proteome in AlphaFold DB academic.oup.com/nar...

---
#proteomics #prot-paper
May 15, 2024 at 9:00 PM
rridrobot.bsky.social
Authors published a paper in Biorxiv, they used Foldseek in the study. Including #RRIDs will make this less ambiguous.

SciScore made a table with this resource, see “Automated Services” module (download as csv, xml or #jats) #reproducibility #methodsmatter
AlphaFind v2: Similarity Search in AlphaFold DB and TED Domains across Structural Contexts
www.biorxiv.org
March 16, 2026 at 12:00 PM
latitude77.bsky.social
AlphaFind: discover structure similarity across the proteome in AlphaFold DB #alphafold #alphafind #protein #structure #database #search
December 15, 2024 at 5:23 PM
latitude77.bsky.social
AlphaFind #alphafold #alphafind #protein #structure #database #search
December 15, 2024 at 5:23 PM
biorxiv-bioinfo.bsky.social
AlphaFind v2: Similarity Search in AlphaFold DB and TED Domains across Structural Contexts https://www.biorxiv.org/content/10.64898/2026.03.10.710735v1
March 13, 2026 at 12:47 AM
krapnik.bsky.social
first student lecture was delivered by Terezia Slaninakova from @masarykuniversity.bsky.social on AlphaFind alphafind.ics.muni.cz
Terezia Slaninakova from @municz on Alphafind
April 23, 2026 at 12:47 PM
biorxivpreprint.bsky.social
AlphaFind v2: Similarity Search in AlphaFold DB and TED Domains across Structural Contexts https://www.biorxiv.org/content/10.64898/2026.03.10.710735v1
March 13, 2026 at 12:47 AM
shihcheng.bsky.social
Explore 3D protein structures with AlphaFind v2 from AlphaFold DB & TED: Fast structure-based searches over large datasets just got easier! PMID:42028635, Nucleic Acids Res 2026, @NAR_Open https://doi.org/10.1093/nar/gkag372 #Medsky #Pharmsky #RNA #ASHG #ESHG 🧪
https://doi.org/10.1093/nar/gkag372
No description available
doi.org
May 25, 2026 at 12:10 AM
aixbiobot.bsky.social
AlphaFind v2: Similarity Search in AlphaFold DB and TED Domains across Structural Contexts [new]
Uses protein embeddings rapid pre-filtering and US-align for refined comparison, enabling large-scale exploration of protein structures.
AlphaFind v2: Similarity Search in AlphaFold DB and TED Domains across Structural Contexts Figure A Figure 1 Figure 2
March 13, 2026 at 1:11 AM