AI in Microscopy: A BioImaging Guide (bioimagingai.janelia.org) is available now! This free, online textbook bridges the gap between tool developers & microscopists + biologists. Whether you’re new to AI or already using it, we hope this book gives you the confidence to apply AI in your research.
AI in Microscopy: A BioImaging Guide
bioimagingai.janelia.org
October 27, 2026 at 5:19 PM
AI in Microscopy: A BioImaging Guide (bioimagingai.janelia.org) is available now! This free, online textbook bridges the gap between tool developers & microscopists + biologists. Whether you’re new to AI or already using it, we hope this book gives you the confidence to apply AI in your research.
I presented "Your friendly Fiji users' guide to #N5 and #OMEZarr" at #I2KxBINA. www.youtube.com/watch?v=Mn-e... . Metadata is as important as the thumbnail suggests!
I2KxBINA 2026 Community Congress | Your Friendly Fiji users guide to N5 and OME-Zarr
YouTube video by BioImaging North America
www.youtube.com
October 31, 2026 at 5:31 PM
I presented "Your friendly Fiji users' guide to #N5 and #OMEZarr" at #I2KxBINA. www.youtube.com/watch?v=Mn-e... . Metadata is as important as the thumbnail suggests!
Thank you for visiting @hhmijanelia.bsky.social, Peter Dedecker (@dedeckerlab.bsky.social, #KULeuven) We loved hosting you! You'll soon be able to watch Peter's #EMBL & #Janelia bioimaging seminar on YouTube: www.youtube.com/@HHMIJanelia #openscience @markkitti.bsky.social @prevedel-lab.bsky.social
November 2, 2026 at 4:51 PM
Thank you for visiting @hhmijanelia.bsky.social, Peter Dedecker (@dedeckerlab.bsky.social, #KULeuven) We loved hosting you! You'll soon be able to watch Peter's #EMBL & #Janelia bioimaging seminar on YouTube: www.youtube.com/@HHMIJanelia #openscience @markkitti.bsky.social @prevedel-lab.bsky.social
Watch @cmhulbert.bsky.social show off Paintera at #I2KxBINA www.youtube.com/watch?v=l8QH... My favorite part is the demo of shape interpolate mode starting at ~25min
I2KxBINA 2026 Community Congress | 3D Annotation and Visualization with Paintera - Caleb Hulbert
YouTube video by BioImaging North America
www.youtube.com
October 31, 2026 at 5:30 PM
Watch @cmhulbert.bsky.social show off Paintera at #I2KxBINA www.youtube.com/watch?v=l8QH... My favorite part is the demo of shape interpolate mode starting at ~25min
🧪 This is a free, interactive publication - and to the best our knowledge, the first - textbook on Artificial Intelligence in BioImaging, edited by the team at @aicjanelia.bsky.social. We thank all the contributors, beyond what the character limit would allow us to list here. 👇
AI in Microscopy: A BioImaging Guide (bioimagingai.janelia.org) is available now! This free, online textbook bridges the gap between tool developers & microscopists + biologists. Whether you’re new to AI or already using it, we hope this book gives you the confidence to apply AI in your research.
AI in Microscopy: A BioImaging Guide
bioimagingai.janelia.org
October 28, 2026 at 10:57 AM
🧪 This is a free, interactive publication - and to the best our knowledge, the first - textbook on Artificial Intelligence in BioImaging, edited by the team at @aicjanelia.bsky.social. We thank all the contributors, beyond what the character limit would allow us to list here. 👇
The materials provide an introduction to research data management #RDM and explain how to structure, organize, and manage your data. They also introduce common bioimaging research data repositories and explain how to publish data in them.
November 2, 2026 at 9:37 AM
The materials provide an introduction to research data management #RDM and explain how to structure, organize, and manage your data. They also introduce common bioimaging research data repositories and explain how to publish data in them.
AI is rapidly transforming microscopy, but as microscopist or biologist, it can be hard to know where to start! I am pleased to share the free, online textbook that @scopeshifu.bsky.social, @owfpuls.bsky.social, and I edited to address this. Check it out at bioimagingai.janelia.org (1/11)
October 28, 2026 at 1:03 PM
AI is rapidly transforming microscopy, but as microscopist or biologist, it can be hard to know where to start! I am pleased to share the free, online textbook that @scopeshifu.bsky.social, @owfpuls.bsky.social, and I edited to address this. Check it out at bioimagingai.janelia.org (1/11)
This Thursday: Defects that make nanotubes glow 💡
Jana Zaumseil, Heidelberg University @uniheidelberg.bsky.social, on luminescent defects in carbon nanotubes for near-infrared bioimaging.
📅 Nov. 5 🕒 3–4 p.m. CET
💻 Online
🆓 Free
🔗 https://tinyurl.com/mws2xek4
#BeilsteinTalks #CarbonNanotubes
Jana Zaumseil, Heidelberg University @uniheidelberg.bsky.social, on luminescent defects in carbon nanotubes for near-infrared bioimaging.
📅 Nov. 5 🕒 3–4 p.m. CET
💻 Online
🆓 Free
🔗 https://tinyurl.com/mws2xek4
#BeilsteinTalks #CarbonNanotubes
November 2, 2026 at 2:02 PM
This Thursday: Defects that make nanotubes glow 💡
Jana Zaumseil, Heidelberg University @uniheidelberg.bsky.social, on luminescent defects in carbon nanotubes for near-infrared bioimaging.
📅 Nov. 5 🕒 3–4 p.m. CET
💻 Online
🆓 Free
🔗 https://tinyurl.com/mws2xek4
#BeilsteinTalks #CarbonNanotubes
Jana Zaumseil, Heidelberg University @uniheidelberg.bsky.social, on luminescent defects in carbon nanotubes for near-infrared bioimaging.
📅 Nov. 5 🕒 3–4 p.m. CET
💻 Online
🆓 Free
🔗 https://tinyurl.com/mws2xek4
#BeilsteinTalks #CarbonNanotubes
Good that it starts from the microscopist's side, most bioimaging AI tooling docs assume you already know what a U-Net is before you open the readme.
October 28, 2026 at 10:20 AM
Good that it starts from the microscopist's side, most bioimaging AI tooling docs assume you already know what a U-Net is before you open the readme.
#ThrowbackThursday with #AQLM at Stony Beach.
Bright sunlight induces lens flare, where internal reflections within the lens system appear as ghosting artifacts. 👻
#ScopeTheScope 🔬 #MBL 🌊 #AQLM 🧫 #Microscopy 🔬 #BioImaging 🧬 #Fluorescence🪼#WoodsHole 🦞 #Optics 💡 #LightMicroscopy 🧪 #STEMCommunity 🫂
Bright sunlight induces lens flare, where internal reflections within the lens system appear as ghosting artifacts. 👻
#ScopeTheScope 🔬 #MBL 🌊 #AQLM 🧫 #Microscopy 🔬 #BioImaging 🧬 #Fluorescence🪼#WoodsHole 🦞 #Optics 💡 #LightMicroscopy 🧪 #STEMCommunity 🫂
October 29, 2026 at 1:31 PM
#ThrowbackThursday with #AQLM at Stony Beach.
Bright sunlight induces lens flare, where internal reflections within the lens system appear as ghosting artifacts. 👻
#ScopeTheScope 🔬 #MBL 🌊 #AQLM 🧫 #Microscopy 🔬 #BioImaging 🧬 #Fluorescence🪼#WoodsHole 🦞 #Optics 💡 #LightMicroscopy 🧪 #STEMCommunity 🫂
Bright sunlight induces lens flare, where internal reflections within the lens system appear as ghosting artifacts. 👻
#ScopeTheScope 🔬 #MBL 🌊 #AQLM 🧫 #Microscopy 🔬 #BioImaging 🧬 #Fluorescence🪼#WoodsHole 🦞 #Optics 💡 #LightMicroscopy 🧪 #STEMCommunity 🫂
I'll be speaking at the Open Bioimaging Practices meetup tomorrow - join us if you're curious about (3D) multiplexed protein image analysis! 🔬
Do you want to learn about multiplexed image analysis using OME-Zarr? Tomorrow, @rhornb.bsky.social , @nrepina.bsky.social & Flurin Sturzenegger will share their learnings about building workflows around multiplexed image analysis, see www.biovisioncenter.uzh.ch/en/events/Up...
Open Bioimaging Practices Meetup, October 2026
www.biovisioncenter.uzh.ch
October 26, 2026 at 8:11 PM
I'll be speaking at the Open Bioimaging Practices meetup tomorrow - join us if you're curious about (3D) multiplexed protein image analysis! 🔬
I'm deeply grateful to CBI @canadabioimaging.bsky.social for awarding me a travel grant to attend the Global BioImaging Exchange of Experience 2026 at EMBL Heidelberg. Congratulations to GBI @globalbioimaging.bsky.social
for bringing this event to life; it was truly outstanding. 🧵👇1/3
#GBI_EoE2026
for bringing this event to life; it was truly outstanding. 🧵👇1/3
#GBI_EoE2026
October 31, 2026 at 12:55 PM
I'm deeply grateful to CBI @canadabioimaging.bsky.social for awarding me a travel grant to attend the Global BioImaging Exchange of Experience 2026 at EMBL Heidelberg. Congratulations to GBI @globalbioimaging.bsky.social
for bringing this event to life; it was truly outstanding. 🧵👇1/3
#GBI_EoE2026
for bringing this event to life; it was truly outstanding. 🧵👇1/3
#GBI_EoE2026
Coming up next Thursday! 💡
Jana Zaumseil, Heidelberg University @uniheidelberg.bsky.social, explains how luminescent defects make carbon nanotubes glow for near-infrared bioimaging.
📅 Nov. 5 🕒 3–4 p.m. CET
💻 Online
🆓 Free, just register: https://tinyurl.com/mws2xek4
#BeilsteinTalks #CarbonNanotubes
Jana Zaumseil, Heidelberg University @uniheidelberg.bsky.social, explains how luminescent defects make carbon nanotubes glow for near-infrared bioimaging.
📅 Nov. 5 🕒 3–4 p.m. CET
💻 Online
🆓 Free, just register: https://tinyurl.com/mws2xek4
#BeilsteinTalks #CarbonNanotubes
October 30, 2026 at 9:04 AM
Coming up next Thursday! 💡
Jana Zaumseil, Heidelberg University @uniheidelberg.bsky.social, explains how luminescent defects make carbon nanotubes glow for near-infrared bioimaging.
📅 Nov. 5 🕒 3–4 p.m. CET
💻 Online
🆓 Free, just register: https://tinyurl.com/mws2xek4
#BeilsteinTalks #CarbonNanotubes
Jana Zaumseil, Heidelberg University @uniheidelberg.bsky.social, explains how luminescent defects make carbon nanotubes glow for near-infrared bioimaging.
📅 Nov. 5 🕒 3–4 p.m. CET
💻 Online
🆓 Free, just register: https://tinyurl.com/mws2xek4
#BeilsteinTalks #CarbonNanotubes
Code, step-by-step beginner guide and documentation (Python notebook and a Matlab version): github.com/Marien-kaefe...
Feedback and questions welcome!
#bioimageanalysis #bioimaging #cardiacresearch #opensource #microscopy
Feedback and questions welcome!
#bioimageanalysis #bioimaging #cardiacresearch #opensource #microscopy
GitHub - Marien-kaefer/BeatRatePy
Contribute to Marien-kaefer/BeatRatePy development by creating an account on GitHub.
github.com
October 29, 2026 at 9:54 AM
Code, step-by-step beginner guide and documentation (Python notebook and a Matlab version): github.com/Marien-kaefe...
Feedback and questions welcome!
#bioimageanalysis #bioimaging #cardiacresearch #opensource #microscopy
Feedback and questions welcome!
#bioimageanalysis #bioimaging #cardiacresearch #opensource #microscopy
Thanks to all authors and the HPC teams at the Crick, VIB/VSC and Liverpool. If you run an imaging facility, we hope this helps you decide whether, and how, to take the step. Comments welcome! 7/9
#bioimaging #HPC #bioimageanalysis #corefacilities
#bioimaging #HPC #bioimageanalysis #corefacilities
October 30, 2026 at 11:01 AM
Thanks to all authors and the HPC teams at the Crick, VIB/VSC and Liverpool. If you run an imaging facility, we hope this helps you decide whether, and how, to take the step. Comments welcome! 7/9
#bioimaging #HPC #bioimageanalysis #corefacilities
#bioimaging #HPC #bioimageanalysis #corefacilities
A practical guide that connects AI developers with biologists can help turn methods into reproducible science. Great resource for the field. #AI #BioImaging
October 30, 2026 at 10:34 AM
A practical guide that connects AI developers with biologists can help turn methods into reproducible science. Great resource for the field. #AI #BioImaging
Invitation to join the #BeilsteinTalk “Luminescent defects in carbon nanotubes for near-infrared bioimaging" with Jana Zaumseil (Heidelberg University @uniheidelberg.bsky.social).
📅 Nov 5, 2026 🕒 3–4 p.m. CET
💻 Online – Participation is free!
#CarbonNanotubes #SWCNTs #bioimaging #BeilsteinTalks
📅 Nov 5, 2026 🕒 3–4 p.m. CET
💻 Online – Participation is free!
#CarbonNanotubes #SWCNTs #bioimaging #BeilsteinTalks
October 26, 2026 at 9:03 AM
Invitation to join the #BeilsteinTalk “Luminescent defects in carbon nanotubes for near-infrared bioimaging" with Jana Zaumseil (Heidelberg University @uniheidelberg.bsky.social).
📅 Nov 5, 2026 🕒 3–4 p.m. CET
💻 Online – Participation is free!
#CarbonNanotubes #SWCNTs #bioimaging #BeilsteinTalks
📅 Nov 5, 2026 🕒 3–4 p.m. CET
💻 Online – Participation is free!
#CarbonNanotubes #SWCNTs #bioimaging #BeilsteinTalks
Have you ever found yourself in a situation like the one described in the video? 🫣 If so, you should definitely take a look at "Basics of RDM in Bioimaging: What Is It and Why Do I Need It" by Maximilian Müller and Jens Wendt from @nfdi4bioimage.bsky.social.
👉 doi.org/10.5281/zeno...
👉 doi.org/10.5281/zeno...
Basics of RDM in Bioimaging - What is it and why do I need it?
These presentations were developed by NFDI4BIOIMAGE and are part of a 2 day workshop at the Light Microscopy Facility, Faculty of Medicine, RWTH Aachen held on 26.06.2026 and on 03.07.2026. Day 1 ("26...
doi.org
November 2, 2026 at 9:37 AM
Have you ever found yourself in a situation like the one described in the video? 🫣 If so, you should definitely take a look at "Basics of RDM in Bioimaging: What Is It and Why Do I Need It" by Maximilian Müller and Jens Wendt from @nfdi4bioimage.bsky.social.
👉 doi.org/10.5281/zeno...
👉 doi.org/10.5281/zeno...
Do you want to learn about multiplexed image analysis using OME-Zarr? Tomorrow, @rhornb.bsky.social , @nrepina.bsky.social & Flurin Sturzenegger will share their learnings about building workflows around multiplexed image analysis, see www.biovisioncenter.uzh.ch/en/events/Up...
Open Bioimaging Practices Meetup, October 2026
www.biovisioncenter.uzh.ch
October 26, 2026 at 8:21 AM
Do you want to learn about multiplexed image analysis using OME-Zarr? Tomorrow, @rhornb.bsky.social , @nrepina.bsky.social & Flurin Sturzenegger will share their learnings about building workflows around multiplexed image analysis, see www.biovisioncenter.uzh.ch/en/events/Up...
Defects that make nanotubes glow 💡
Jana Zaumseil, Heidelberg University @uniheidelberg.bsky.social, talks about luminescent defects in carbon nanotubes for near-infrared bioimaging.
📅 Nov 5, 2026 🕒 3–4 p.m. CET
💻 Online
🆓 Free
🔗 https://tinyurl.com/mws2xek4
#BeilsteinTalks #CarbonNanotubes
Jana Zaumseil, Heidelberg University @uniheidelberg.bsky.social, talks about luminescent defects in carbon nanotubes for near-infrared bioimaging.
📅 Nov 5, 2026 🕒 3–4 p.m. CET
💻 Online
🆓 Free
🔗 https://tinyurl.com/mws2xek4
#BeilsteinTalks #CarbonNanotubes
October 28, 2026 at 2:02 PM
Defects that make nanotubes glow 💡
Jana Zaumseil, Heidelberg University @uniheidelberg.bsky.social, talks about luminescent defects in carbon nanotubes for near-infrared bioimaging.
📅 Nov 5, 2026 🕒 3–4 p.m. CET
💻 Online
🆓 Free
🔗 https://tinyurl.com/mws2xek4
#BeilsteinTalks #CarbonNanotubes
Jana Zaumseil, Heidelberg University @uniheidelberg.bsky.social, talks about luminescent defects in carbon nanotubes for near-infrared bioimaging.
📅 Nov 5, 2026 🕒 3–4 p.m. CET
💻 Online
🆓 Free
🔗 https://tinyurl.com/mws2xek4
#BeilsteinTalks #CarbonNanotubes
🍽️🔬 Phase contrast & Pasta 🍝
Another ICCE Bites session around the corner! It’s time for science, food, and plenty of opportunity to exchange ideas on phase contrast imaging.
📅 Thursday, November 5
⏰ 1:00 p.m.
📍 S03 S00 A40
#ICCE #Microscopy #FluorescenceMicroscopy #Bioimaging
Another ICCE Bites session around the corner! It’s time for science, food, and plenty of opportunity to exchange ideas on phase contrast imaging.
📅 Thursday, November 5
⏰ 1:00 p.m.
📍 S03 S00 A40
#ICCE #Microscopy #FluorescenceMicroscopy #Bioimaging
November 2, 2026 at 2:41 PM
🍽️🔬 Phase contrast & Pasta 🍝
Another ICCE Bites session around the corner! It’s time for science, food, and plenty of opportunity to exchange ideas on phase contrast imaging.
📅 Thursday, November 5
⏰ 1:00 p.m.
📍 S03 S00 A40
#ICCE #Microscopy #FluorescenceMicroscopy #Bioimaging
Another ICCE Bites session around the corner! It’s time for science, food, and plenty of opportunity to exchange ideas on phase contrast imaging.
📅 Thursday, November 5
⏰ 1:00 p.m.
📍 S03 S00 A40
#ICCE #Microscopy #FluorescenceMicroscopy #Bioimaging
A practical resource can make these methods much more approachable for lab teams. Bridging tool builders and domain scientists is key to useful, reproducible imaging workflows. #Bioimaging #AI
October 29, 2026 at 12:13 PM
A practical resource can make these methods much more approachable for lab teams. Bridging tool builders and domain scientists is key to useful, reproducible imaging workflows. #Bioimaging #AI
The book begins by introducing fundamental AI concepts, starting with a primer by @herrsaalfeld.bsky.social. Check out Chapter 2 to learn the difference between machine learning, deep learning and more, along with guidance on key potential pitfalls for using AI in bioimaging. (2/11)
October 28, 2026 at 1:03 PM
The book begins by introducing fundamental AI concepts, starting with a primer by @herrsaalfeld.bsky.social. Check out Chapter 2 to learn the difference between machine learning, deep learning and more, along with guidance on key potential pitfalls for using AI in bioimaging. (2/11)
Coming up next Thursday! 💡
In the upcoming #beilsteintalk, Jana Zaumseil (Heidelberg University @uniheidelberg, Germany) explains how luminescent defects make carbon nanotubes glow for near-infrared bioimaging.
📅 Nov 5, 2026 🕒 3–4 p.m. CET
💻 Online (Free)
🔗 […]
[Original post on hessen.social]
In the upcoming #beilsteintalk, Jana Zaumseil (Heidelberg University @uniheidelberg, Germany) explains how luminescent defects make carbon nanotubes glow for near-infrared bioimaging.
📅 Nov 5, 2026 🕒 3–4 p.m. CET
💻 Online (Free)
🔗 […]
[Original post on hessen.social]
October 30, 2026 at 9:53 AM
Coming up next Thursday! 💡
In the upcoming #beilsteintalk, Jana Zaumseil (Heidelberg University @uniheidelberg, Germany) explains how luminescent defects make carbon nanotubes glow for near-infrared bioimaging.
📅 Nov 5, 2026 🕒 3–4 p.m. CET
💻 Online (Free)
🔗 […]
[Original post on hessen.social]
In the upcoming #beilsteintalk, Jana Zaumseil (Heidelberg University @uniheidelberg, Germany) explains how luminescent defects make carbon nanotubes glow for near-infrared bioimaging.
📅 Nov 5, 2026 🕒 3–4 p.m. CET
💻 Online (Free)
🔗 […]
[Original post on hessen.social]
Light-responsive FAST tags, by the chemist who co-invented FAST. Ludovic Jullien, one of our co-founders, gives the France-BioImaging webinar on 5 November at 11:00 Paris: reversible photoswitching, and photoconversion when two fluorogens are combined.
[WEBINAR] 7 days left until FBI Connect📌
This session, with Ludovic Jullien, is focused on a new generation of probes based on FAST system.
He will explain how it works and present the new possibilities it offers for fluorescence microscopy.
More info 👉 france-bioimaging.org/fbi-special-...
This session, with Ludovic Jullien, is focused on a new generation of probes based on FAST system.
He will explain how it works and present the new possibilities it offers for fluorescence microscopy.
More info 👉 france-bioimaging.org/fbi-special-...
October 29, 2026 at 4:05 PM
Light-responsive FAST tags, by the chemist who co-invented FAST. Ludovic Jullien, one of our co-founders, gives the France-BioImaging webinar on 5 November at 11:00 Paris: reversible photoswitching, and photoconversion when two fluorogens are combined.