From individual thresholds to collective hysteresis: a mechanistic model of the dawn chorus: buff.ly/gtVWLSq #JRSocInterface #CompBio
September 23, 2026 at 2:01 PM
From individual thresholds to collective hysteresis: a mechanistic model of the dawn chorus: buff.ly/gtVWLSq #JRSocInterface #CompBio
Here is a #compbio starter kit! go.bsky.app/QVPoZXp To all the #Bioinformatics #Genomics #MachineLearning folks: please RP and let’s build this together!
November 23, 2024 at 4:17 AM
Here is a #compbio starter kit! go.bsky.app/QVPoZXp To all the #Bioinformatics #Genomics #MachineLearning folks: please RP and let’s build this together!
Free course: Intro to Computational Biology by Mike Love, author of DESeq2.
biodatascience.github.io/compbio/
biodatascience.github.io/compbio/
August 26, 2025 at 1:45 PM
Free course: Intro to Computational Biology by Mike Love, author of DESeq2.
biodatascience.github.io/compbio/
biodatascience.github.io/compbio/
Hi Bluesky CompBio! I’m Andy Hickl, CTO at Allen Institute, merging AI/ML & biology to tackle complex problems in neuroscience, cell science, & immunology. #compbio
November 14, 2024 at 3:47 PM
Hi Bluesky CompBio! I’m Andy Hickl, CTO at Allen Institute, merging AI/ML & biology to tackle complex problems in neuroscience, cell science, & immunology. #compbio
Ok #compbio #bioinformatics folks - what’s peoples favorite journal for methods and software these days? NAR, plos comp bio, bioinformatics, gigascience, cell reports methods, or … and why?
January 1, 2025 at 8:31 PM
Ok #compbio #bioinformatics folks - what’s peoples favorite journal for methods and software these days? NAR, plos comp bio, bioinformatics, gigascience, cell reports methods, or … and why?
My sympathy and support for all the international students and postdocs at Harvard. I can only imagine how scary this must feel. Stay strong. And if there's anything I can do to help those in compbio, please reach out. All of us need to rally to help them out. 1/
May 23, 2025 at 10:01 AM
My sympathy and support for all the international students and postdocs at Harvard. I can only imagine how scary this must feel. Stay strong. And if there's anything I can do to help those in compbio, please reach out. All of us need to rally to help them out. 1/
#compchem New preprint: Satellite Tobacco Mosaic Virus: Revealing Environmental Drivers of Capsid and Nucleocapsid Stability using High-Resolution Simulations.
Large scale MD & metadynamics simulations of the complete STMV using the AMOEBA polarizable FF. #compchemsky
www.biorxiv.org/content/10.1...
Large scale MD & metadynamics simulations of the complete STMV using the AMOEBA polarizable FF. #compchemsky
www.biorxiv.org/content/10.1...
January 31, 2025 at 7:56 AM
New #preprint by @alejandrofabregastejeda.com and @theramseylab.bsky.social argue that in computational modelling of complex biological systems, more is not necessarily better! It is the ratio of free parameters to the experimental constraints that is important!
👇👇👇
doi.org/10.48550/arX...
#compbio
👇👇👇
doi.org/10.48550/arX...
#compbio
August 20, 2026 at 10:28 AM
New #preprint by @alejandrofabregastejeda.com and @theramseylab.bsky.social argue that in computational modelling of complex biological systems, more is not necessarily better! It is the ratio of free parameters to the experimental constraints that is important!
👇👇👇
doi.org/10.48550/arX...
#compbio
👇👇👇
doi.org/10.48550/arX...
#compbio
There are so many people moving over that I'm sure I'm missing folks. Can we make a #compbio / #genomics intro thread to get reacquainted?
I'm at the University of Colorado. I often say that if you pick two of three from #transcriptome, #ML, and #publicdata, my lab is probably interested.
I'm at the University of Colorado. I often say that if you pick two of three from #transcriptome, #ML, and #publicdata, my lab is probably interested.
November 12, 2024 at 8:04 PM
There are so many people moving over that I'm sure I'm missing folks. Can we make a #compbio / #genomics intro thread to get reacquainted?
I'm at the University of Colorado. I often say that if you pick two of three from #transcriptome, #ML, and #publicdata, my lab is probably interested.
I'm at the University of Colorado. I often say that if you pick two of three from #transcriptome, #ML, and #publicdata, my lab is probably interested.
Wong et al. present IQ-TREE version 3, with new features including mixture models, gene and site concordance factors, integration with phylogenomic divergence time estimation, and a fully featured sequence simulator.
🔗 doi.org/10.1093/molbev/msag117
#evobio #molbio #compbio
🔗 doi.org/10.1093/molbev/msag117
#evobio #molbio #compbio
May 25, 2026 at 11:30 AM
Wong et al. present IQ-TREE version 3, with new features including mixture models, gene and site concordance factors, integration with phylogenomic divergence time estimation, and a fully featured sequence simulator.
🔗 doi.org/10.1093/molbev/msag117
#evobio #molbio #compbio
🔗 doi.org/10.1093/molbev/msag117
#evobio #molbio #compbio
Happy to share our recent publication on benchmarking peak calling methods for CUT&RUN.
academic.oup.com/bioinformati...
Published in @oxunipress.bsky.social Bioinformatics | led by aminnoorani.bsky.social
#Epigenomics #Genomics #Bioinformatics #MachineLearning #CUTandRUN #CompBio #4DNucleome
academic.oup.com/bioinformati...
Published in @oxunipress.bsky.social Bioinformatics | led by aminnoorani.bsky.social
#Epigenomics #Genomics #Bioinformatics #MachineLearning #CUTandRUN #CompBio #4DNucleome
July 16, 2025 at 6:14 PM
Happy to share our recent publication on benchmarking peak calling methods for CUT&RUN.
academic.oup.com/bioinformati...
Published in @oxunipress.bsky.social Bioinformatics | led by aminnoorani.bsky.social
#Epigenomics #Genomics #Bioinformatics #MachineLearning #CUTandRUN #CompBio #4DNucleome
academic.oup.com/bioinformati...
Published in @oxunipress.bsky.social Bioinformatics | led by aminnoorani.bsky.social
#Epigenomics #Genomics #Bioinformatics #MachineLearning #CUTandRUN #CompBio #4DNucleome
Haller, Ralph & Messer present SLiM 5, a major extension of the SLiM simulation framework for simulating multiple chromosomes, enabling a heightened level of realism for full-genome simulations.
🔗 doi.org/10.1093/molbev/msaf313
#evobio #molbio #compbio
🔗 doi.org/10.1093/molbev/msaf313
#evobio #molbio #compbio
January 5, 2026 at 8:53 AM
Haller, Ralph & Messer present SLiM 5, a major extension of the SLiM simulation framework for simulating multiple chromosomes, enabling a heightened level of realism for full-genome simulations.
🔗 doi.org/10.1093/molbev/msaf313
#evobio #molbio #compbio
🔗 doi.org/10.1093/molbev/msaf313
#evobio #molbio #compbio
Actively looking for a postdoc interested in host-virus evolution. Please apply to the #MahanFellowship This fellowship provides early career scientists with the opportunity to join a Fred Hutch CompBio lab (like ours!). If interested please contact me to coordinate proposal and apply by Dec 05 2025
Apply - Interfolio
{{$ctrl.$state.data.pageTitle}} - Apply - Interfolio
apply.interfolio.com
October 1, 2025 at 5:40 PM
Actively looking for a postdoc interested in host-virus evolution. Please apply to the #MahanFellowship This fellowship provides early career scientists with the opportunity to join a Fred Hutch CompBio lab (like ours!). If interested please contact me to coordinate proposal and apply by Dec 05 2025
We’re looking for fellow nerds to help us make disordered proteins druggable. Love #IDPs, #MD, #NMR, #AI, #DrugDiscovery, or #MassSpec? Let’s talk.
@bindresearch.org is hiring across the board: bindresearch.org/careers/
#compchem #compbio #NMRChat #TeamMassSpec #chemjobs @chemjobber.bsky.social
@bindresearch.org is hiring across the board: bindresearch.org/careers/
#compchem #compbio #NMRChat #TeamMassSpec #chemjobs @chemjobber.bsky.social
Careers
Careers
bindresearch.org
March 24, 2025 at 10:51 AM
We’re looking for fellow nerds to help us make disordered proteins druggable. Love #IDPs, #MD, #NMR, #AI, #DrugDiscovery, or #MassSpec? Let’s talk.
@bindresearch.org is hiring across the board: bindresearch.org/careers/
#compchem #compbio #NMRChat #TeamMassSpec #chemjobs @chemjobber.bsky.social
@bindresearch.org is hiring across the board: bindresearch.org/careers/
#compchem #compbio #NMRChat #TeamMassSpec #chemjobs @chemjobber.bsky.social
This is a genomics / compbio heavy starter pack!
bsky.app/starter-pack...
bsky.app/starter-pack...
November 13, 2024 at 1:01 AM
This is a genomics / compbio heavy starter pack!
bsky.app/starter-pack...
bsky.app/starter-pack...
I’m Lucia. I lead a lab studying #Sleep in typical and non-neurotypical development using #genomics and #Compbio. I’m also a Latina immigrant #academicmama and thus my existence in this country right now likely makes a lot of people uncomfortable
November 10, 2024 at 5:32 AM
I’m Lucia. I lead a lab studying #Sleep in typical and non-neurotypical development using #genomics and #Compbio. I’m also a Latina immigrant #academicmama and thus my existence in this country right now likely makes a lot of people uncomfortable
CompBio method developers: software that only runs on your computer and is not available via a repository like CRAN, PyPI, Bioconductor, is not a proper research output —
just like a set of scribbled notes on your desktop is not the same as a preprint or a paper.
Finish the job.
just like a set of scribbled notes on your desktop is not the same as a preprint or a paper.
Finish the job.
January 24, 2025 at 9:36 AM
CompBio method developers: software that only runs on your computer and is not available via a repository like CRAN, PyPI, Bioconductor, is not a proper research output —
just like a set of scribbled notes on your desktop is not the same as a preprint or a paper.
Finish the job.
just like a set of scribbled notes on your desktop is not the same as a preprint or a paper.
Finish the job.
If you're at #ASHG25 check out these talks!
And follow this group for a blend of #geneticepi #statgen #compbio
And follow this group for a blend of #geneticepi #statgen #compbio
A few programming notes for #ashg25 from trainees in my group @mdanderson.bsky.social + a thread of me being a proud PI. Please drop by these sessions and talk to @taylorhead.bsky.social, @seantbres.bsky.social , @ytchang11.bsky.social, and me in Boston @geneticssociety.bsky.social next week!
October 14, 2025 at 1:46 PM
If you're at #ASHG25 check out these talks!
And follow this group for a blend of #geneticepi #statgen #compbio
And follow this group for a blend of #geneticepi #statgen #compbio
Hi 🦋 This is the saezlab (saezlab.org) bluesky account. We integrate #omics data with mechanistic molecular knowledge into statistical and machine learning #ML methods, and we share our tools as free #opensource packages (github.com/saezlab/) #systemsbiology #biology #compbio
Saez-Rodriguez GroupSaez-Rodriguez Group – Systems Biomedicine
saezlab.org
November 11, 2024 at 9:04 AM
Hi 🦋 This is the saezlab (saezlab.org) bluesky account. We integrate #omics data with mechanistic molecular knowledge into statistical and machine learning #ML methods, and we share our tools as free #opensource packages (github.com/saezlab/) #systemsbiology #biology #compbio
me waiting for conference energy (or, at least, #MathBio #CompBio and #ChE) to thrive here. feel cheated X happened before/as I started my PhD. 🧪
It's totally fucking dope that this place became the sports app. You need the experts, the beat writers, the nerds teaching you the game, the sycophants, the casual fans, the newbies, and the lookie loos to make it all work and Bluesky has gotten these segments in pretty much every sport now.
June 19, 2026 at 12:17 AM
There's an opening in our CompBio group at #PacBio. Apply below if you're interested in method / tool development for long-read sequencing applications! #Bioinformatics
pacbio.wd12.myworkdayjobs.com/PacBio-/job/...
pacbio.wd12.myworkdayjobs.com/PacBio-/job/...
December 12, 2025 at 6:40 PM
There's an opening in our CompBio group at #PacBio. Apply below if you're interested in method / tool development for long-read sequencing applications! #Bioinformatics
pacbio.wd12.myworkdayjobs.com/PacBio-/job/...
pacbio.wd12.myworkdayjobs.com/PacBio-/job/...
I'm hiring a bioinformatician! Review of applications starts October 1 with a start date as soon as possible. 🧪 #Genomics #popGen #CompBio northeastern.wd1.myworkdayjobs.com/careers/job/...
Bioinformatician - Lotterhos Lab
About the Opportunity About the Center for Marine Ecological Genomics The successful candidate will be based at the Lotterhos Lab and the Center for Marine Ecological Genomics at Northeastern Marine S...
northeastern.wd1.myworkdayjobs.com
September 15, 2026 at 4:13 PM
I'm hiring a bioinformatician! Review of applications starts October 1 with a start date as soon as possible. 🧪 #Genomics #popGen #CompBio northeastern.wd1.myworkdayjobs.com/careers/job/...
Hi folks, I am planning to be more active here in the #compbio #singlecell realm and reconnecting.
I’m currently at Calico LLC in South SF - an aging company, and my projects are mostly in the cancer field.
I love #compbio methods, work and teach #scanpy
I’m currently at Calico LLC in South SF - an aging company, and my projects are mostly in the cancer field.
I love #compbio methods, work and teach #scanpy
November 13, 2024 at 2:59 AM
Hi folks, I am planning to be more active here in the #compbio #singlecell realm and reconnecting.
I’m currently at Calico LLC in South SF - an aging company, and my projects are mostly in the cancer field.
I love #compbio methods, work and teach #scanpy
I’m currently at Calico LLC in South SF - an aging company, and my projects are mostly in the cancer field.
I love #compbio methods, work and teach #scanpy