Unlocking the full potential of spatial omics in plants: practical challenges, solutions, and a path forward (Min-Yao Jhu , Max Minne , Ziliang Luo , Hannah Dörpholz , et al) doi.org/10.1093/plce... #PlantScience @aspbofficial
Unlocking the full potential of spatial omics in plants: practical challenges, solutions, and a path forward
Abstract. Spatial omics technologies provide new opportunities for plant biology by enabling molecular profiling within structurally intact tissues, reveal
doi.org
November 10, 2026 at 8:26 PM
Unlocking the full potential of spatial omics in plants: practical challenges, solutions, and a path forward (Min-Yao Jhu , Max Minne , Ziliang Luo , Hannah Dörpholz , et al) doi.org/10.1093/plce... #PlantScience @aspbofficial
🪸 PUBLISHED @natgenet.nature.com
📰Multiscale multimodal integration of spatial omics through a deep generative model with CORAL.
By Siyu He, James Zou and colleagues.
⬇️
www.nature.com/articles/s41...
📰Multiscale multimodal integration of spatial omics through a deep generative model with CORAL.
By Siyu He, James Zou and colleagues.
⬇️
www.nature.com/articles/s41...
Multiscale multimodal integration of spatial omics through a deep generative model with CORAL - Nature Genetics
Cross-scale spatial Omics Registration and Analysis via graph Learning is a deep generative model that integrates multiscale spatial multi-omics data using graph-attention aggregation mechanisms, enab...
www.nature.com
November 9, 2026 at 1:59 PM
🪸 PUBLISHED @natgenet.nature.com
📰Multiscale multimodal integration of spatial omics through a deep generative model with CORAL.
By Siyu He, James Zou and colleagues.
⬇️
www.nature.com/articles/s41...
📰Multiscale multimodal integration of spatial omics through a deep generative model with CORAL.
By Siyu He, James Zou and colleagues.
⬇️
www.nature.com/articles/s41...
ATCC's Cell Line Omics Data www.atcc.org/application...
November 11, 2026 at 3:15 PM
ATCC's Cell Line Omics Data www.atcc.org/application...
📝 ASHG Notes: Myra Liquid Handler
✍️ Omics! Omics!
✍️ Omics! Omics!
ASHG Notes: Myra Liquid Handler
Article de Omics! Omics!
omicsomics.blogspot.com
November 10, 2026 at 8:59 AM
📝 ASHG Notes: Myra Liquid Handler
✍️ Omics! Omics!
✍️ Omics! Omics!
🚨 NEW JOB ALERT 🚨
The Cooperative Institute for Marine and Atmospheric Research in Honolulu is searching for a Supervisory Omics Researcher to lead eDNA and metabarcoding projects across across marine ecosystems 🧬🌊🦀 🧪
See our job board for details!
tinyurl.com/ycx8zz7v
The Cooperative Institute for Marine and Atmospheric Research in Honolulu is searching for a Supervisory Omics Researcher to lead eDNA and metabarcoding projects across across marine ecosystems 🧬🌊🦀 🧪
See our job board for details!
tinyurl.com/ycx8zz7v
November 10, 2026 at 12:20 PM
🚨 NEW JOB ALERT 🚨
The Cooperative Institute for Marine and Atmospheric Research in Honolulu is searching for a Supervisory Omics Researcher to lead eDNA and metabarcoding projects across across marine ecosystems 🧬🌊🦀 🧪
See our job board for details!
tinyurl.com/ycx8zz7v
The Cooperative Institute for Marine and Atmospheric Research in Honolulu is searching for a Supervisory Omics Researcher to lead eDNA and metabarcoding projects across across marine ecosystems 🧬🌊🦀 🧪
See our job board for details!
tinyurl.com/ycx8zz7v
Announcement: I will be starting in Fall of 2027 as an Assistant Professor at UNC Chapel Hill in the CS department.
My lab will build algorithms for large-scale microbial and meta-omics sequence analysis. I'll be recruiting PhD students. More info at jshaw-lab-compbio.github.io
My lab will build algorithms for large-scale microbial and meta-omics sequence analysis. I'll be recruiting PhD students. More info at jshaw-lab-compbio.github.io
Research
The JShaw Lab will be starting in the Fall of 2027 in the Department of Computer Science at the University of North Carolina at Chapel Hill.
jshaw-lab-compbio.github.io
November 8, 2026 at 9:15 PM
Announcement: I will be starting in Fall of 2027 as an Assistant Professor at UNC Chapel Hill in the CS department.
My lab will build algorithms for large-scale microbial and meta-omics sequence analysis. I'll be recruiting PhD students. More info at jshaw-lab-compbio.github.io
My lab will build algorithms for large-scale microbial and meta-omics sequence analysis. I'll be recruiting PhD students. More info at jshaw-lab-compbio.github.io
Funded PhD opportunity for a Precision Medicine: Future Leaders of Health Equality (PM:FLoHE) project on "Diagnostic indicators and co-experience of mental health, neurodivergence, and learning difficulties for multi-omics discovery and prediction"
usher.ed.ac.uk/precision-me...
usher.ed.ac.uk/precision-me...
Diagnostic indicators and co-experience of mental health, neurodivergence, and learning difficulties for multi-omics discovery and prediction | Precision Medicine Doctoral Training Programme | Usher I...
Precision Medicine Project - Diagnostic indicators and co-experience of mental health, neurodivergence, and learning difficulties for multi-omics discovery and prediction
usher.ed.ac.uk
November 9, 2026 at 8:44 AM
Funded PhD opportunity for a Precision Medicine: Future Leaders of Health Equality (PM:FLoHE) project on "Diagnostic indicators and co-experience of mental health, neurodivergence, and learning difficulties for multi-omics discovery and prediction"
usher.ed.ac.uk/precision-me...
usher.ed.ac.uk/precision-me...
Spatial omics resolves adrenergic and mesenchymal cell states in neuroblastoma
Spatial omics resolves adrenergic and mesenchymal cell states in neuroblastoma
Patel et al. combine six spatial-omics platforms with single-cell/single-nucleus RNA sequencing across 54 neuroblastoma tumors to resolve a debate over malignant mesenchymal (MES) tumor cells. Using signatures from patient-derived xenografts, they identify MES tumor cells and show that a higher MES score predicts worse patient outcome.
dlvr.it
November 10, 2026 at 7:51 PM
Spatial omics resolves adrenergic and mesenchymal cell states in neuroblastoma
Apoplast multi-omics profiling during fungal infection uncovers new players of basal and early induced immunity in Arabidopsis thaliana
A #CommunityResource article by Fagard et al.
👇
📖 nph.onlinelibrary.wiley.com/doi/10.1111/...
#LatestIssue #PlantScience
A #CommunityResource article by Fagard et al.
👇
📖 nph.onlinelibrary.wiley.com/doi/10.1111/...
#LatestIssue #PlantScience
November 5, 2026 at 8:03 PM
Apoplast multi-omics profiling during fungal infection uncovers new players of basal and early induced immunity in Arabidopsis thaliana
A #CommunityResource article by Fagard et al.
👇
📖 nph.onlinelibrary.wiley.com/doi/10.1111/...
#LatestIssue #PlantScience
A #CommunityResource article by Fagard et al.
👇
📖 nph.onlinelibrary.wiley.com/doi/10.1111/...
#LatestIssue #PlantScience
Well, they also put you into a fictional " Department of Generative AI in Clinical Pharmacy", your coauthors are fictional also, at "Department of AI Safety and Human Override" at Utrecht University...
Probably a citation delivery vehicle. On this topic:
forbetterscience.com/2023/01/25/t...
Probably a citation delivery vehicle. On this topic:
forbetterscience.com/2023/01/25/t...
The Pullulating Polyps of OMICS
“Oh Stewardess, I speak Lorem Ipsum” – Smut Clyde
forbetterscience.com
November 10, 2026 at 5:16 PM
Well, they also put you into a fictional " Department of Generative AI in Clinical Pharmacy", your coauthors are fictional also, at "Department of AI Safety and Human Override" at Utrecht University...
Probably a citation delivery vehicle. On this topic:
forbetterscience.com/2023/01/25/t...
Probably a citation delivery vehicle. On this topic:
forbetterscience.com/2023/01/25/t...
The most useful omics results are the ones that tell you what to do next. Kenneth Kastaniegaard, CEO of Biogenity, is starting a weekly series on how to get from omics results to biological understanding. Worth following if you work with omics data.
November 11, 2026 at 2:03 PM
The most useful omics results are the ones that tell you what to do next. Kenneth Kastaniegaard, CEO of Biogenity, is starting a weekly series on how to get from omics results to biological understanding. Worth following if you work with omics data.
New EXO Chats. Dr. Jasmine Plummer (Center for Spatial Omics, St. Jude) on spatial omics data. www.sciexplor.com/exo/podcast/7
EXO - Beyond the Cell | Science Exploration Press
www.sciexplor.com
November 11, 2026 at 12:59 AM
New EXO Chats. Dr. Jasmine Plummer (Center for Spatial Omics, St. Jude) on spatial omics data. www.sciexplor.com/exo/podcast/7
Let cells do cells, impose a simple selection, and watch what they can do! All the omics stuff likely to point at what gets switched around.
1/ The origin of multicellularity was one of the most profound transitions in the history of life, underpinning arguably the single largest increase in organismal complexity since the origin of cells themselves.
November 10, 2026 at 2:23 AM
Let cells do cells, impose a simple selection, and watch what they can do! All the omics stuff likely to point at what gets switched around.
Member publication alert:
Multi-omics identifies convergent genetic drivers of medial arterial calcification in chronic kidney disease
academic.oup.com/eurheartj/ad...
Multi-omics identifies convergent genetic drivers of medial arterial calcification in chronic kidney disease
academic.oup.com/eurheartj/ad...
Multi-omics identifies convergent genetic drivers of medial arterial calcification in chronic kidney disease
This editorial refers to ‘Transcription factor TBX2 is a key regulator of vascular calcification’, by S. Li et al., https://doi.org/10.1093/eurheartj/ehag7
academic.oup.com
November 8, 2026 at 9:22 PM
Member publication alert:
Multi-omics identifies convergent genetic drivers of medial arterial calcification in chronic kidney disease
academic.oup.com/eurheartj/ad...
Multi-omics identifies convergent genetic drivers of medial arterial calcification in chronic kidney disease
academic.oup.com/eurheartj/ad...
The Faculty of Engineering welcomes Dr. Nattarat Wongsuwan (Belle). She is a Lecturer in the Department of Biomedical Engineering with expertise in extracellular vesicles, nanomaterials, bioinformatics, multi-omics, and biomedical AI.
November 11, 2026 at 7:27 AM
The Faculty of Engineering welcomes Dr. Nattarat Wongsuwan (Belle). She is a Lecturer in the Department of Biomedical Engineering with expertise in extracellular vesicles, nanomaterials, bioinformatics, multi-omics, and biomedical AI.
Psychiatric disorders share a common pattern of cerebellar-cortical dysconnectivity, while disorder-specific connectivity differences map onto distinct molecular systems and neurotransmitter receptor/transporter profiles.
Connection-Level Multi-Omics Reveals Cerebellar-Cortical Dysconnectivity and Divergent Molecular Signatures Across Major Psychiatric Disorders
Understanding how disease-related connectome alterations relate to underlying molecular systems remains a major challenge in psychiatric disorders.
www.biologicalpsychiatryjournal.com
November 9, 2026 at 7:03 PM
Psychiatric disorders share a common pattern of cerebellar-cortical dysconnectivity, while disorder-specific connectivity differences map onto distinct molecular systems and neurotransmitter receptor/transporter profiles.
Lately for me it’s been to go through the 400 figures the authors crammed into supplement and find out which have meaning and which are window dressing. And to temper language that makes sweeping claims based on weak correlations. But I do omics stuff
Which of these is it
1) Help authors improve papers
2) Identify flaws in the work
3) Assess the extent to which claims are supported by data
4) Advise the editor on a decision
5) Provide guidance/context for readers
6) Rank/filter papers in a journal hierarchy
2/n
1) Help authors improve papers
2) Identify flaws in the work
3) Assess the extent to which claims are supported by data
4) Advise the editor on a decision
5) Provide guidance/context for readers
6) Rank/filter papers in a journal hierarchy
2/n
November 7, 2026 at 8:42 AM
Lately for me it’s been to go through the 400 figures the authors crammed into supplement and find out which have meaning and which are window dressing. And to temper language that makes sweeping claims based on weak correlations. But I do omics stuff
The authors included RRIDs in their in ACS Chemical Biology paper! RRIDs improve reproducibility in scientific research. #methodsmatter #OpenResearch #BetterScience
Omics-Scale Capture of Electrophilic Metabolites
Read the full paper: Omics-Scale Capture of Electrophilic Metabolites
doi.org
November 11, 2026 at 8:00 AM
The authors included RRIDs in their in ACS Chemical Biology paper! RRIDs improve reproducibility in scientific research. #methodsmatter #OpenResearch #BetterScience
When at 19 I was sent an Amex gold card, I knew something was very, very wrong with our banking system - so I did a little historical research and found that was an after effect of Reagan(omics).
November 9, 2026 at 12:26 AM
When at 19 I was sent an Amex gold card, I knew something was very, very wrong with our banking system - so I did a little historical research and found that was an after effect of Reagan(omics).
Explore your omics data interactively with iSEE! 🧬 Join our hands-on online course, Exploring and Visualizing Omics Data, on 25–26 November (13:00–17:00 CET).
Learn to create linked visualizations and explore bulk & single-cell RNA-seq data.
www.physalia-courses.org/courses-work...
Learn to create linked visualizations and explore bulk & single-cell RNA-seq data.
www.physalia-courses.org/courses-work...
Exploring and Visualizing Omics Data with iSEE
Interactive exploration of bulk and single-cell data with iSEE
www.physalia-courses.org
November 11, 2026 at 9:36 AM
Explore your omics data interactively with iSEE! 🧬 Join our hands-on online course, Exploring and Visualizing Omics Data, on 25–26 November (13:00–17:00 CET).
Learn to create linked visualizations and explore bulk & single-cell RNA-seq data.
www.physalia-courses.org/courses-work...
Learn to create linked visualizations and explore bulk & single-cell RNA-seq data.
www.physalia-courses.org/courses-work...
Do not miss the thoughtful perspective from @markcblaser.bsky.social on this fascinating discovery of a ne
Multi-omics identifies convergent genetic drivers of #MedialArterialCalcification in #ChronicKidneyDisease
academic.oup.com/eurheartj/ad...
Multi-omics identifies convergent genetic drivers of #MedialArterialCalcification in #ChronicKidneyDisease
academic.oup.com/eurheartj/ad...
November 6, 2026 at 8:42 PM
Do not miss the thoughtful perspective from @markcblaser.bsky.social on this fascinating discovery of a ne
Multi-omics identifies convergent genetic drivers of #MedialArterialCalcification in #ChronicKidneyDisease
academic.oup.com/eurheartj/ad...
Multi-omics identifies convergent genetic drivers of #MedialArterialCalcification in #ChronicKidneyDisease
academic.oup.com/eurheartj/ad...
Wondered what a career in environmental science looks like? Dr Adam Burke, Research Associate at NERC Environmental ‘Omics Facility, uses cutting-edge metabolomics and mass spectrometry techniques to help researchers understand environmental challenges: https://ow.ly/LXVb5104B3E #GreenCareersWeek
November 6, 2026 at 5:14 PM
Wondered what a career in environmental science looks like? Dr Adam Burke, Research Associate at NERC Environmental ‘Omics Facility, uses cutting-edge metabolomics and mass spectrometry techniques to help researchers understand environmental challenges: https://ow.ly/LXVb5104B3E #GreenCareersWeek
We are looking for postdoctoral researchers who will work on projects in single cell proteomics, spatial multi-omics, signaling dynamics and modeling, organoids, or autonomous microfluidic data factories. Please reach out to me, and spread the news.
Publications
taylab.uchicago.edu
November 11, 2026 at 4:04 AM
We are looking for postdoctoral researchers who will work on projects in single cell proteomics, spatial multi-omics, signaling dynamics and modeling, organoids, or autonomous microfluidic data factories. Please reach out to me, and spread the news.
🧬This week the Data Science for Biology Workshop II on multi-omics in Nairobi, Kenya is underway 🎤led by Dr Afrah Khairallah www.ahri.org & Drs D Kwon & J Elsherbini @ragoninstitute.bsky.social 💽 #DS4BWorkshop #Multiomics #DataScience #Nairobi #ScienceAfrica @harvardgh.bsky.social @hsph.harvard.edu
November 10, 2026 at 7:45 AM
🧬This week the Data Science for Biology Workshop II on multi-omics in Nairobi, Kenya is underway 🎤led by Dr Afrah Khairallah www.ahri.org & Drs D Kwon & J Elsherbini @ragoninstitute.bsky.social 💽 #DS4BWorkshop #Multiomics #DataScience #Nairobi #ScienceAfrica @harvardgh.bsky.social @hsph.harvard.edu