#genomebrowser
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jsantoyo.bsky.social
The UCSC Genome Browser database: 2026 update. #GenomeBrowser #UCSC #Genomics #NAR @narjournal.bsky.social 🧪🧬 🖥️
academic.oup.com/nar/advance-...
November 30, 2025 at 7:05 PM
jsantoyo.bsky.social
Beyond reference bias: Making pangenomes accessible with PangyPlot. #GenomeBrowser #PangenomeGraphs #GeneAnnotations #Visualization #Genomics #Bioinformatics @biorxivpreprint.bsky.social
www.biorxiv.org/content/10.1...
November 8, 2025 at 5:31 PM
genomebrowser.bsky.social
We turn 25 today!

July 7th marks the 25th anniversary of the human genome going online and the start of the UCSC Genome Browser.

Then vs. now, we have 165k monthly visitors, and our codebase is over three million lines of code.

See our news for more: bit.ly/genomeBrowser...
July 7, 2025 at 9:45 PM
bacdive.bsky.social
🆕 #BacDive feature update:

In addition to #Bakta annotations, the #GenomeBrowser 🧬🖥️ now also visualizes resistance genes annotated with #CARD-RGI 🧫, virulence factors annotated with #VFDB 💉and biosynthetic gene clusters annotated with @antismash.bsky.social 🧪.
Screenshot of the new version of the genome browser
September 10, 2026 at 12:27 PM
denbi.bsky.social
🧬 Big updates coming to @bacdive.bsky.social!

Join us for an online workshop introducing our brand-new API—enabling automated, advanced queries across all BacDive data fields & genome annotations.

Plus: GenomeBrowser & Search demos!

🗓️ Nov 17, 15:00 CET
📍 Online
🔗 www.denbi.de/training-cou...
October 7, 2026 at 8:29 AM
genomebrowser.bsky.social
We have a new training page with updated tutorials covering our most popular tools. Each includes an annotated screenshot, guided walkthroughs, and an interactive click-through tutorial.

See our news for more: bit.ly/genomeBrowser...
June 26, 2025 at 10:51 PM
genomebrowser.bsky.social
New on hg38: Google DeepMind's AlphaGenome Variant Impact (AVI) scores, all 8.8 billion possible single-base changes. It scores non-coding DNA too, flagging things like the TERT promoter mutations common in cancer.

See our news for more: bit.ly/GenomeBrowser...
AVI scores at the TERT locus on hg38, one subtrack per alternate allele. Scores stay high across the highlighted promoter, shown in red as EH38E3622530, and fall to background either side. The two promoter mutations most often seen in cancer sit inside it, beyond the end of every TERT transcript.
September 10, 2026 at 6:21 PM
ergabiodiv.bsky.social
💡 #KnowledgeHighlight | Tutorial: Ensembl - Browsing genomes @ensembl.org
➡️ www.ebi.ac.uk/training/onl...

Explore more open-access training resources in the ERGA #KnowledgeHub ➡️ knowledge.erga-biodiversity.eu

#genomes #genomebrowser #ensembl
Ensembl - Browsing genomes
Ensembl - Browsing genomes
www.ebi.ac.uk
July 6, 2026 at 7:30 AM
ergabiodiv.bsky.social
💡 #KnowledgeHighlight | IGV Tutorial by OMGenomics Labs
sandbox.bio/tutorials/ig...

Explore open-access training materials in the ERGA #KnowledgeHub ➡️ knowledge.erga-biodiversity.eu
#IGV #genomics #genomebrowser
IGV tutorial
Interactive IGV tutorial: learn to recognize real variants from artifacts using the IGV genome browser
sandbox.bio
August 24, 2026 at 7:30 AM
heinrichferreira.bsky.social
Mapped reads from a CRAM file by using SAMTOOLS in the background to interactively decode the DNA reads overlapping with the telomeric region of Chromosome 1 from the HG38 human reference genome.
Coming functionality for Visual Genome Browser
#bioinformatics #genomics #telomeres #cram #genomebrowser
Display of mapped reads from a CRAM file using SAMTOOLS to interactively decode the DNA reads overlapping with the telomeric region of Chromosome 1 from the HG38 human reference genome.
January 2, 2025 at 11:08 AM
eepuckett.bsky.social
Added the simplest custom track to my GenomeBrowser, and I'm over hear like Charli XCX:
Now I wanna [see] my track, bumpin' that
November 14, 2024 at 5:58 PM
selfdz.bsky.social
@GenomeBrowser @ccg_unam Been working with the UCSC @GenomeBrowser 4 years, still learning new tricks - Multiexon view, selection by accessions, multiregion view!
November 14, 2024 at 11:24 AM
selfdz.bsky.social
Starting the UCSC @GenomeBrowser workshop @ccg_unam taught by Robert Kuhn. #genomics #dataviz #Mexico
November 14, 2024 at 11:17 AM
selfdz.bsky.social
Just watched #Biohackers on @netflix and they talk about antisense RNA, SNPs, and have shots of UCSC's @GenomeBrowser and @nanopore MinION and PromethION. I feel genomics has hit the mainstream! 🤩 Of course everything takes a few hours instead of weeks but I'll take it.
November 14, 2024 at 9:49 AM
deannachurch.bsky.social
Are comment lines allowed in BED files? Not explicit in spec but I've found a couple of sites that suggest this is OK. cc @GenomeBrowser
November 3, 2024 at 10:53 AM
deannachurch.bsky.social
Heading off to Santa Cruz to visit my colleagues @GenomeBrowser and talk variant analysis and reference assemblies.
November 3, 2024 at 9:41 AM
deannachurch.bsky.social
.@GenomeBrowser do you provide a track showing the hg19/hg38 chains used to support liftOver? I didn't see it but may be missing something.
November 3, 2024 at 9:19 AM
deannachurch.bsky.social
@meiotic_Drive @KMS_Meltzy ask @GenomeBrowser snp142 is out on GRCh38- but caveat- only remap coordinates, no recalls yet.
November 3, 2024 at 9:19 AM
deannachurch.bsky.social
Does @GenomeBrowser not have RefSeq versions used in refGene available in Table browser? Not having any luck finding this. #bioinformatics
November 3, 2024 at 7:44 AM
martinalexsmith.bsky.social
After 24, longest R9 @nanopore read (passed QC) is over 160kb. FYI, @GenomeBrowser BLAT only accepts 75kb max
December 4, 2024 at 1:33 AM
martinalexsmith.bsky.social
Ever get lost in the @GenomeBrowser ? I could sometimes spend hours just spuriously travelling data tracks in the genome
December 3, 2024 at 12:39 PM
rmwaterhouse.bsky.social
Teaching #genomics through manual #biocuration win-win https://www.biorxiv.org/content/10.1101/781658v1 thanks @galaxyproject @GEP_CURE ... a web-based platform for creating @GenomeBrowser Hubs & #JBrowse genome browsers convertible to @apollo_bbop instances!
G-OnRamp: Generating genome browsers to facilitate underg...
Scientists are sequencing new genomes at an increasing ra...
www.biorxiv.org
December 10, 2024 at 10:27 PM