HitSeq was really hitting hard today!
July 15, 2026 at 12:15 AM
HitSeq was really hitting hard today!
Ela Pertea's keynote at HitSeq is starting!
July 14, 2026 at 3:06 PM
Ela Pertea's keynote at HitSeq is starting!
Christopher E. Mason’s keynote at the HitSeq at #ISMB2026 felt like watching an episode of „Sendung ohne Namen“ (does anybody know it?). A crazy amount of ideas, facts, and sci-fi. From environmental metagenomics to space genomics.
July 13, 2026 at 10:05 PM
Christopher E. Mason’s keynote at the HitSeq at #ISMB2026 felt like watching an episode of „Sendung ohne Namen“ (does anybody know it?). A crazy amount of ideas, facts, and sci-fi. From environmental metagenomics to space genomics.
#ISMB2026 welcome to the first day of #HitSeq! We will start this year session at 11AM with a keynote form Andre Kahles: “Petabase-Scale Sequence Search with MetaGraph” at International Ballroom Center. Full schedule: www.hitseq.org/schedule.html
HiTSeq 2026: Conference on High Throughput Sequencing Algorithms and Applications - Schedule
www.hitseq.org
July 13, 2026 at 12:24 PM
#ISMB2026 welcome to the first day of #HitSeq! We will start this year session at 11AM with a keynote form Andre Kahles: “Petabase-Scale Sequence Search with MetaGraph” at International Ballroom Center. Full schedule: www.hitseq.org/schedule.html
My student Liz has a talk at 12:40 in microbiome and I have one at 2:20 in HitSeq. You should work them into your schedule if they fit!
July 13, 2026 at 11:37 AM
My student Liz has a talk at 12:40 in microbiome and I have one at 2:20 in HitSeq. You should work them into your schedule if they fit!
I will attend #ISMB2026 and be presenting Amaranth, a scRNA-Seq assembler that improves single-cell transcript assembly by modeling UMI reads and internal reads discriminatively.
Talk presentation will be on July 14, Tue, at 2:20 pm in HitSeq.
Paper: academic.oup.com/bioinformati...
Talk presentation will be on July 14, Tue, at 2:20 pm in HitSeq.
Paper: academic.oup.com/bioinformati...
Validate User
doi.org
July 13, 2026 at 2:31 AM
I will attend #ISMB2026 and be presenting Amaranth, a scRNA-Seq assembler that improves single-cell transcript assembly by modeling UMI reads and internal reads discriminatively.
Talk presentation will be on July 14, Tue, at 2:20 pm in HitSeq.
Paper: academic.oup.com/bioinformati...
Talk presentation will be on July 14, Tue, at 2:20 pm in HitSeq.
Paper: academic.oup.com/bioinformati...
Our #ISMB2026 paper is now online!
I’m excited to present it at HiTSeq on July 13.
Many thanks to my advisor @pashadag.bsky.social. I’m also grateful to @iscb.bsky.social for awarding me the Conference Fellowship.
If you’ll be at ISMB, feel free to stop by my talk and say hi. I’d love to connect!
I’m excited to present it at HiTSeq on July 13.
Many thanks to my advisor @pashadag.bsky.social. I’m also grateful to @iscb.bsky.social for awarding me the Conference Fellowship.
If you’ll be at ISMB, feel free to stop by my talk and say hi. I’d love to connect!
The gift of novelty: repeat-robust k-mer-based estimators of mutation rates
AbstractMotivation. Estimating mutation rates between evolutionarily related sequences is a central problem in molecular evolution. Due to the rapid expans
academic.oup.com
July 11, 2026 at 1:39 PM
Our #ISMB2026 paper is now online!
I’m excited to present it at HiTSeq on July 13.
Many thanks to my advisor @pashadag.bsky.social. I’m also grateful to @iscb.bsky.social for awarding me the Conference Fellowship.
If you’ll be at ISMB, feel free to stop by my talk and say hi. I’d love to connect!
I’m excited to present it at HiTSeq on July 13.
Many thanks to my advisor @pashadag.bsky.social. I’m also grateful to @iscb.bsky.social for awarding me the Conference Fellowship.
If you’ll be at ISMB, feel free to stop by my talk and say hi. I’d love to connect!
Submit via the ISMB 2026 system and select HiTSeq as the track. More info at hitseq.org.
HiTSeq 2026: Conference on High Throughput Sequencing Algorithms and Applications - Home
hitseq.org
April 1, 2026 at 5:52 PM
Submit via the ISMB 2026 system and select HiTSeq as the track. More info at hitseq.org.
#HitSeq is the annual ISCB gathering focused on high-throughput sequencing algorithms, and about 50% of talks are selected from submitted abstracts. This year’s keynote speakers are Christopher Mason, Mihaela Pertea, and Andre Kahles 🤖
April 1, 2026 at 5:52 PM
#HitSeq is the annual ISCB gathering focused on high-throughput sequencing algorithms, and about 50% of talks are selected from submitted abstracts. This year’s keynote speakers are Christopher Mason, Mihaela Pertea, and Andre Kahles 🤖
My ISCB 2025 talk on DecoDen in the HITSeq COSI is now on YouTube!
Check it out -
youtu.be/-0EOIDzWniU
🧪🧬🖥️
Check it out -
youtu.be/-0EOIDzWniU
🧪🧬🖥️
Towards Personalized Epigenomics: Learning Shared... - Tanmayee Narendra - HiTSeq - ISMB/ECCB 2025
YouTube video by ISCB
youtu.be
February 20, 2026 at 5:24 PM
My ISCB 2025 talk on DecoDen in the HITSeq COSI is now on YouTube!
Check it out -
youtu.be/-0EOIDzWniU
🧪🧬🖥️
Check it out -
youtu.be/-0EOIDzWniU
🧪🧬🖥️
Deadline for proceeding papers for #ISMB26 approaching fast - send your work on sequence analysis algos and tag then for #HiTSeq @hitseq.bsky.social
📢 The #ISMB2026 Proceedings deadline is ONE WEEK away!
📅 Deadline: January 20, 2026 (no extensions)
Selected papers will be published in Bioinformatics and presented at the conference in DC this July!
📥Submit here: https://www.iscb.org/ismb2026/call-for-submissions/proceedings
📅 Deadline: January 20, 2026 (no extensions)
Selected papers will be published in Bioinformatics and presented at the conference in DC this July!
📥Submit here: https://www.iscb.org/ismb2026/call-for-submissions/proceedings
January 16, 2026 at 10:02 PM
Deadline for proceeding papers for #ISMB26 approaching fast - send your work on sequence analysis algos and tag then for #HiTSeq @hitseq.bsky.social
The HitSeq cosi is totally our jam.
December 22, 2025 at 3:43 PM
The HitSeq cosi is totally our jam.
Great to see #BITS members at #ISMBECCB2025, the Conference of the International Society of Computational Biology in Liverpool!
Congrats to Giulia Cesaro, Mirko Treccani, Leonardo Morelli & Laura Veschetti for presenting at the NetBio, Transmed, HitSeq & iRNA sessions!
Congrats to Giulia Cesaro, Mirko Treccani, Leonardo Morelli & Laura Veschetti for presenting at the NetBio, Transmed, HitSeq & iRNA sessions!
July 25, 2025 at 2:54 PM
Great to see #BITS members at #ISMBECCB2025, the Conference of the International Society of Computational Biology in Liverpool!
Congrats to Giulia Cesaro, Mirko Treccani, Leonardo Morelli & Laura Veschetti for presenting at the NetBio, Transmed, HitSeq & iRNA sessions!
Congrats to Giulia Cesaro, Mirko Treccani, Leonardo Morelli & Laura Veschetti for presenting at the NetBio, Transmed, HitSeq & iRNA sessions!
We open our second day at #Hitseq @hitseq.bsky.social with our last key note speaker Tobias Marschall and his insightful talk about the human pangenome and the challenges for structural variation analysis. His work has focused on tackling current limitations such as sample size and remaining gaps
July 24, 2025 at 9:02 AM
We open our second day at #Hitseq @hitseq.bsky.social with our last key note speaker Tobias Marschall and his insightful talk about the human pangenome and the challenges for structural variation analysis. His work has focused on tackling current limitations such as sample size and remaining gaps
July 24, 2025 at 7:56 AM
Meet our amazing sponsor PacBio @pacbio.bsky.social for @hitseq.bsky.social track at #ISMBECCB2025 represented by Elizabeth Tseng with her talk "Bioinformatics analysis for long-read RNA sequencing: challenges and promises" #hitseq #iscb #sequencing #application #iverpool #uk
July 23, 2025 at 4:00 PM
Meet our amazing sponsor PacBio @pacbio.bsky.social for @hitseq.bsky.social track at #ISMBECCB2025 represented by Elizabeth Tseng with her talk "Bioinformatics analysis for long-read RNA sequencing: challenges and promises" #hitseq #iscb #sequencing #application #iverpool #uk
I will talk about those papers in my Hitseq keynote tomorrow at #ISMBECCB2025, so if you are in Liverpool don't miss it.
July 23, 2025 at 3:17 PM
I will talk about those papers in my Hitseq keynote tomorrow at #ISMBECCB2025, so if you are in Liverpool don't miss it.
🧬🖥️ @noorpratap.bsky.social is now talking about alevin-fry-atac at HitSeq! Come check out his talk (and Zahra's I. oarfish right after)!
July 23, 2025 at 1:06 PM
🧬🖥️ @noorpratap.bsky.social is now talking about alevin-fry-atac at HitSeq! Come check out his talk (and Zahra's I. oarfish right after)!
We have officially started #HitSeq track @hitseq.bsky.social at #ISMBECCB2025. Francisco de la Vega, introduces our first #keynote speaker Valentina Boeva @valboeva.bsky.social with her talk: "Learning variant effects on chromatin accessibility and 3D structure without matched Hi-C data"
July 23, 2025 at 10:56 AM
We have officially started #HitSeq track @hitseq.bsky.social at #ISMBECCB2025. Francisco de la Vega, introduces our first #keynote speaker Valentina Boeva @valboeva.bsky.social with her talk: "Learning variant effects on chromatin accessibility and 3D structure without matched Hi-C data"
🖥️🧬 Looking forward to the first day of HiTSeq at #ISMB2025 today. If you're around and want to chat, let me know! Make sure to see the COMBINE-lab goodness, @noorpratap.bsky.social's talk on alevin-fry-atac and Zhara's talk on Oarfish, at HiTSeq right after the lunch break!
July 23, 2025 at 6:58 AM
🖥️🧬 Looking forward to the first day of HiTSeq at #ISMB2025 today. If you're around and want to chat, let me know! Make sure to see the COMBINE-lab goodness, @noorpratap.bsky.social's talk on alevin-fry-atac and Zhara's talk on Oarfish, at HiTSeq right after the lunch break!
@longtrec.bsky.social is presenting the latest & hottest long-read transcriptomics research at #ISMBECCB2025! Posters D-176 (isONclust3), C-207 (Multisample isoforms), C-237 (TSS prediction), D-202 (Single-cellSQANTI), and talks at iRNA (TUSCO, Amanita) and HitSeq (SQANTI-reads) @hitseq.bsky.social
July 21, 2025 at 10:28 AM
@longtrec.bsky.social is presenting the latest & hottest long-read transcriptomics research at #ISMBECCB2025! Posters D-176 (isONclust3), C-207 (Multisample isoforms), C-237 (TSS prediction), D-202 (Single-cellSQANTI), and talks at iRNA (TUSCO, Amanita) and HitSeq (SQANTI-reads) @hitseq.bsky.social
John will share how to achieve higher throughput and fidelity in screening via flexible, high-accuracy barcode decoding. He presents a principled, information theory-based software solution that unifies diverse, demanding decoding tasks within one robust framework.
#HiTSeq
📅 July 23 | 📍 Poster C-192
#HiTSeq
📅 July 23 | 📍 Poster C-192
July 19, 2025 at 5:33 PM
John will share how to achieve higher throughput and fidelity in screening via flexible, high-accuracy barcode decoding. He presents a principled, information theory-based software solution that unifies diverse, demanding decoding tasks within one robust framework.
#HiTSeq
📅 July 23 | 📍 Poster C-192
#HiTSeq
📅 July 23 | 📍 Poster C-192
The GreedyMini paper is finally out as part of #ISMBECCB2025 proceedings: academic.oup.com/bioinformati.... Arseny will present it on the last day (July 24th) and last session (14:20) of the HiTSeq meeting.
GreedyMini: generating low-density DNA minimizers
AbstractMotivation. Minimizers are the most popular k-mer selection scheme in algorithms and data structures analyzing high-throughput sequencing (HTS) dat
academic.oup.com
July 16, 2025 at 6:31 AM
The GreedyMini paper is finally out as part of #ISMBECCB2025 proceedings: academic.oup.com/bioinformati.... Arseny will present it on the last day (July 24th) and last session (14:20) of the HiTSeq meeting.