#livingphysics
Excited to share this detailed biophysical study of #PhaseSeparation in the Pyrenoid, an algal microcompartment that fixes a third of the Earth's #CO2 🌏. We combine methods across scales, in vitro 🧪 and in vivo 🦠

Thanks for the very fun collaboration! 🤗
#PlantScience 🌾 #TeamTomo 🔬 #LivingPhysics 🧬🧶
How does molecular valency shape condensate assembly and function? We used the CO2-fixing organelle in algae—the pyrenoid—to find out… 🧵

Preprint here!:
www.biorxiv.org/content/10.6...

@cellarchlab.com @phaips.vd.st @biologyatyork.bsky.social
#Rubisco #PhaseSeparation #Condensates #Pyrenoid
January 30, 2026 at 3:50 PM
This looks awesome!

#livingphysics
Published: Noise equals control.

I detail an explicit mapping between stochastic systems and control theory, showing how goal-directed behaviour arises from purely causal stochastic systems. Illustrated with stochastic resonance & Brownian ratchets
journals.aps.org/pre/abstract...
Noise equals control
Stochastic systems have a control-theoretic interpretation in which noise plays the role of control. In the weak-noise limit, relevant at low temperatures or in large populations, this leads to a prec...
journals.aps.org
September 3, 2025 at 2:53 PM
You had me at “low dimensional behavioral manifold” 😍 #livingphysics
Complex behaviour is not limited to animals! Here we map the entire spectrum of waveforms dynamics on a quadriflagellate single cell with 4x 70um (!) #cilia, to a low dimensional behavioural manifold with surprising structure! #protistsonsky

All revealed in our new preprint doi.org/10.1101/2025...
August 23, 2025 at 10:06 AM
This will be quite fun! Join us in September for "“Physics of Adaptation & Decision Making in Biology” www.fluidlab.nl/padm25
VPF10 — Research Group | Mazi Jalaal | UvA
www.fluidlab.nl
August 12, 2025 at 11:24 AM
We’re recruiting PhD students & postdocs excited about nonlinear dynamics and the physics of living systems. Help us spread the word!
💥CONGRATS💥 to @mattiaserra.bsky.social on receiving a $1.6M NIH MIRA award. Mattia's project will integrate math and physics to develop data-driven frameworks for discovering the mechanisms of biological processes.
August 9, 2025 at 6:33 PM
August 1, 2025 at 10:29 AM
How can cells self-organize rapidly into complex patterns during development?

Let’s explore a powerful and underappreciated mechanism: Directed Cell Migration (DCM).

Preprint @biorxivpreprint.bsky.social : doi.org/10.1101/2025...

👇Thread 🧵(1/11)
July 30, 2025 at 1:18 PM
How far can you compress a complex system?

🚨 In our latest paper we collapse high-dim compartmental models (from epidemics to ecosystems) into a single 1-D equation using quantum-inspired math, exposing universal phase transitions #ComplexSystems ‪👇👇👇

journals.aps.org/prx/abstract...
July 17, 2025 at 12:08 PM
Spot the pattern! Hyperdisorder is a phenomenon that combines order at the microscopic scale with disorder at the macro level. It's now been observed for the first time in a biological system, showing up in the spots on the skin of young squid. 🧪 ⚛️ physicsworld.com/a/hyperdisor...
Hyperdisorder appears in pigment patterns on squid skin – Physics World
Phenomenon also occurs in critical systems found in statistical physics and is directly linked to the animal’s growth
physicsworld.com
July 14, 2025 at 11:33 AM
(1/4) I’m happy to introduce our new work led by PhD student Akira Kawano (not on Bluesky), which explores social behavior as mutual prediction, quantified by the decomposition of information (PID) between the past and future of a multi-organism system: doi.org/10.1101/2025...
Decomposing Predictive Information in Social Dynamics
Social behaviors include some of the most interesting interactions in living systems yet their characterization is often qualitative or specialized to particular organisms and assays. Here we suggest that at the core of social interactions is the notion of mutual prediction, which we analyze in the context of two male zebrafish engaged in a dominance contest. Using 3D velocity trajectories, we construct the mutual information between a two-animal past and one-animal future, and we quantify the redundant, unique, and synergistic components using partial information decomposition (PID). As social behaviors can change rapidly in time, we compute PID using a sliding time window, and we choose the window size to maximize total information. We find that our predictive information decomposition naturally aligns with important social concepts, such as mirroring and dominance. At the end of the contest, we find asymmetries in self-unique and redundant information which align with the emergent dominance relationship. During the contest, we find that redundant information increases, showing that predictive information is increasingly shared between individuals. In contrast synergistic and unique information, which capture information exchange, are approximately constant. Applied to mecp2 zebrafish mutants, an autism model, we find that predictive information is reduced overall, but especially for synergistic flows, which is indicative of difficulties in more complex social dynamics. Significance Statement Social interactions are rich and diverse, ranging from mirroring to complementary actions. A unifying framework for defining and analyzing such interaction types has long been needed. Here, based on modern information theory, we formulate how the past state of interacting organisms encodes the future state of an individual. This framework provides a natural decomposition of pairwise social dynamics into mirroring, independent action, directed influence, and joint action. Applied to dominance contests in zebrafish, these modes of interaction capture distinct phases of conflict, their assessment strategies, and the resulting dominance relationships. Moreover, our analysis reveals a specific disruption in the social behavior of mutant zebrafish linked to autism, shedding new light on impairments in communication and social learning. ### Competing Interest Statement The authors have declared no competing interest. OIST Graduate University
doi.org
July 12, 2025 at 3:31 PM
Our new paper is out!
👇🏻👇🏻👇🏻
#criticality #ghostcycles @mpinb.mpg.de
Our new paper in #PRE @physreve.bsky.social‬ on how #criticality governs the response of systems with 👻 #dynamics ("ghost cycles") to external inputs compared to #slow-fast systems: journals.aps.org/pre/abstract...

Had a great time working with ‪@koseskalab.bsky.social‬ and Ulrike Feudel, TY! 😊
July 10, 2025 at 8:32 AM
PNAS special feature on Collective Artificial Intelligence and Evolutionary Dynamics

Contributions from scientists in machine learning, evolutionary game theory, and their growing intersection.

www.pnas.org/toc/pnas/122...
July 1, 2025 at 5:39 AM
Synthetic ecosystems that autonomously and continuously evolve in silico 👾
An Alifer dream we pursue with Flow-Lenia, a mass-conservative continuous CA !
If you are interested in complex systems with (1) emergent creatures and (2) intrinsic evolutionary dynamics, go check our new paper !
A 🧵
June 25, 2025 at 12:39 AM
🧵 🧪 1/ Hi! I’m excited to share our latest work, now on arXiv:

Repulsive particle interactions at cellular interfaces enable selective information processing (arxiv.org/abs/2506.14739)

Where we explore how the physical properties of living systems can help cells process spatial information.
June 20, 2025 at 8:54 AM
Another day, another @wgilpin.bsky.social paper I simply must read, I’m not finished with Panda yet!
#livingphysics
Does stability matter in biology? My article on the cover of this month’s @PLOSCompBiol explores how large ecosystems develop supertransients, a manifestation of computational hardness (1/N)

doi.org/10.1371/jour...
June 16, 2025 at 8:36 PM
Temperature is so important for plants that they have come up with many independent temperature sensors.

Curious? Read more in this review by former WeigelWorld members Sridevi Sureshkumar & Suresh Balasubramanian.
#plantscience
www.science.org/doi/10.1126/...
June 13, 2025 at 10:28 AM
Please join BPPB on Friday June 13 @ 11 EDT for exciting talks by Rachel Bennett (Analytical framework for coordination of metachronal cilia) & Emily Gehrels (How embryos generate polarized tissue flows during development). For more information, please visit sites.google.com/view/bppb-se....
June 11, 2025 at 8:45 PM
We propose a novel framework that disentangles the concepts of “hardware” and “state” within the NCA. For us:
- Rules = "Physics" dictating state transitions.
- Hardware = Immutable + heterogeneous scaffold guiding the CA behaviour.
- State = Dynamic physical & computational substrate.
June 6, 2025 at 9:40 AM
📣 New review! Dynamical systems and low-dimensional geometric structures in phase space help rationalize how embryos develop form and function, from large datasets. We focus on morphogenesis, cell differentiation, and their interconnection.
@alex-plum.bsky.social

sciencedirect.com/science/arti...
June 5, 2025 at 6:02 PM
May 23, 2025 at 5:37 AM
Gene regulatory interactions are assumed to be finely tuned.

Yet, making (strong) promoters from random DNA sequences is remarkably easy !

De novo evolved promoters in E. coli exhibit low noise by default.

1/2
May 10, 2025 at 6:19 PM
📣Next Tuesday our online seminar is with Jacopo Grilli (ICTP Trieste) on:

⭐Competition without contingency and functional convergence⭐

Zoom link: iite.info/seminar/
Global times: www.timeanddate.com/worldclock/f...

Free for anyone to join and get involved, no need to register - see you there!
April 11, 2025 at 10:01 AM