BUSCO v6.0.0 has been released. busco.ezlab.org
BUSCO - from QC to gene prediction and phylogenomics
from QC to gene prediction and phylogenomics
busco.ezlab.org
July 11, 2025 at 9:29 PM
BUSCO v6.0.0 has been released. busco.ezlab.org
New from the Near Lab, a super collaboration led by @chasedbrownstein.bsky.social
Phylogenomics and evolutionary history of the iconic reef fish clade wrasses and parrotfishes (Labridae)
www.science.org/doi/10.1126/sciadv.adu6149
Phylogenomics and evolutionary history of the iconic reef fish clade wrasses and parrotfishes (Labridae)
www.science.org/doi/10.1126/sciadv.adu6149
Phylogenomics establishes an Early Miocene reconstruction of reef vertebrate diversity
Phylogenomics reveals a younger-than-expected age of reef fish diversification.
www.science.org
May 7, 2025 at 6:30 PM
New from the Near Lab, a super collaboration led by @chasedbrownstein.bsky.social
Phylogenomics and evolutionary history of the iconic reef fish clade wrasses and parrotfishes (Labridae)
www.science.org/doi/10.1126/sciadv.adu6149
Phylogenomics and evolutionary history of the iconic reef fish clade wrasses and parrotfishes (Labridae)
www.science.org/doi/10.1126/sciadv.adu6149
Phylogenomics supports a single origin of terrestriality in isopods: royalsocietypublishing.org/doi/10.1098/... #ProcB #evolution #phylogenetics
May 2, 2025 at 2:04 PM
Phylogenomics supports a single origin of terrestriality in isopods: royalsocietypublishing.org/doi/10.1098/... #ProcB #evolution #phylogenetics
Come join the Workshop on Phylogenomics in Cesky Krumlov, Czechia, from January 25 through February 7, 2026!
Applications close November 15!
#phylogenetics #evolution #genomics #ai
evomics.org/apply-worksh...
Applications close November 15!
#phylogenetics #evolution #genomics #ai
evomics.org/apply-worksh...
Apply: Workshop on Phylogenomics 2026 - Evolution and Genomics
Application for the 2026 Workshop on Phylogenomics Use this form to apply for the 2026 Workshop on Phylogenomics being held in Cesky Krumlov, Czechia from 25th January through 7th February, ...
evomics.org
October 29, 2025 at 7:23 PM
Come join the Workshop on Phylogenomics in Cesky Krumlov, Czechia, from January 25 through February 7, 2026!
Applications close November 15!
#phylogenetics #evolution #genomics #ai
evomics.org/apply-worksh...
Applications close November 15!
#phylogenetics #evolution #genomics #ai
evomics.org/apply-worksh...
My postdoc work on phylogenomics of Rumex is out ahead of print in Evolution Letters!
academic.oup.com/evlett/advan...
academic.oup.com/evlett/advan...
Phylogenomics resolves key relationships in Rumex and uncovers a dynamic history of independently evolving sex chromosomes
Abstract. Sex chromosomes have evolved independently many times across eukaryotes. Despite a considerable body of literature on sex chromosome evolution, t
academic.oup.com
November 23, 2024 at 6:45 PM
My postdoc work on phylogenomics of Rumex is out ahead of print in Evolution Letters!
academic.oup.com/evlett/advan...
academic.oup.com/evlett/advan...
All this is spelled out in the paper itself:
Phylogenomics and museomics reveal five distinct species of tiger cats in South America
Lescroart, Nogales-Ascarrunz, et al. demonstrate that the contentious tiger cat species
complex consists of five cryptic species. Based on analyses of 38 whole genomes from
the Neotropical cat genus L...
www.cell.com
September 17, 2026 at 9:29 PM
All this is spelled out in the paper itself:
Phylogenomics of the rarest animals: a second species of Micrognathozoa identified by machine learning royalsocietypublishing.org/doi/10.1098/...
February 22, 2025 at 9:28 AM
Phylogenomics of the rarest animals: a second species of Micrognathozoa identified by machine learning royalsocietypublishing.org/doi/10.1098/...
I'm hiring a postdoc to work in theoretical / computational phylogenomics! More info at tinyurl.com/63hb5ew8. Please share!
August 21, 2025 at 12:52 PM
I'm hiring a postdoc to work in theoretical / computational phylogenomics! More info at tinyurl.com/63hb5ew8. Please share!
October 24, 2025 at 3:50 AM
We've just created an exciting new Phylogenomics Botanist role to join our vibrant team at Botanic Gardens of Sydney and help us build the NSW Plant Tree of Life! Applications close 26 Jan 2026: iworkfor.nsw.gov.au/job/phylogen...
#botanicgardens #nswflora #nswptol #phylogenomics
#botanicgardens #nswflora #nswptol #phylogenomics
January 13, 2026 at 12:26 AM
We've just created an exciting new Phylogenomics Botanist role to join our vibrant team at Botanic Gardens of Sydney and help us build the NSW Plant Tree of Life! Applications close 26 Jan 2026: iworkfor.nsw.gov.au/job/phylogen...
#botanicgardens #nswflora #nswptol #phylogenomics
#botanicgardens #nswflora #nswptol #phylogenomics
Rosa Fernández (@rosafernandez.bsky.social) introducing the field of Phylogenomics to our participants 🙌🏽🧬🌳💻 #evomics2026
January 24, 2026 at 10:15 AM
Rosa Fernández (@rosafernandez.bsky.social) introducing the field of Phylogenomics to our participants 🙌🏽🧬🌳💻 #evomics2026
A new method for trimming alignments in #phylogenomics — PhyIN. It identifies and trims regions with high phylogenetic discord. Able to trim well even on single loci — an advantage for gene tree/species tree studies. #evolbiol #phylogeny 🧪http://doi.org/10.7717/peerj.18504 Some backstory... 🧵
PhyIN: trimming alignments by phylogenetic incompatibilities among neighbouring sites
In phylogenomics, regions of low alignment reliability and high noise are typically trimmed from multiple sequence alignments before they are used in phylogenetic inference. I introduce a new trimming...
doi.org
December 6, 2024 at 12:56 AM
A new method for trimming alignments in #phylogenomics — PhyIN. It identifies and trims regions with high phylogenetic discord. Able to trim well even on single loci — an advantage for gene tree/species tree studies. #evolbiol #phylogeny 🧪http://doi.org/10.7717/peerj.18504 Some backstory... 🧵
NEW Publication!😄
Here, we show how #PhyKIT — a broadly applicable toolkit for #phylogenomics — can be used to construct phylogenomic data matrices (& quantify biases therein), detect anomalies in predicted orthology, calculate gene-gene coevolution, & more!
🔗: tinyurl.com/yc5ja4xz
Here, we show how #PhyKIT — a broadly applicable toolkit for #phylogenomics — can be used to construct phylogenomic data matrices (& quantify biases therein), detect anomalies in predicted orthology, calculate gene-gene coevolution, & more!
🔗: tinyurl.com/yc5ja4xz
November 25, 2024 at 5:25 PM
NEW Publication!😄
Here, we show how #PhyKIT — a broadly applicable toolkit for #phylogenomics — can be used to construct phylogenomic data matrices (& quantify biases therein), detect anomalies in predicted orthology, calculate gene-gene coevolution, & more!
🔗: tinyurl.com/yc5ja4xz
Here, we show how #PhyKIT — a broadly applicable toolkit for #phylogenomics — can be used to construct phylogenomic data matrices (& quantify biases therein), detect anomalies in predicted orthology, calculate gene-gene coevolution, & more!
🔗: tinyurl.com/yc5ja4xz
Two seemingly unrelated sides of our lab collided today in the AWESOME new Angiosperm Phylogeny Group system poster: flowers 🌸 and phylogenomics 🧬
Need a new genome? Just pick up the phone and “dial-a-genome” 📞🧬 @getgenome.bsky.social
www.tudelft.nl/en/hortus-bo...
Need a new genome? Just pick up the phone and “dial-a-genome” 📞🧬 @getgenome.bsky.social
www.tudelft.nl/en/hortus-bo...
September 22, 2026 at 9:20 AM
Two seemingly unrelated sides of our lab collided today in the AWESOME new Angiosperm Phylogeny Group system poster: flowers 🌸 and phylogenomics 🧬
Need a new genome? Just pick up the phone and “dial-a-genome” 📞🧬 @getgenome.bsky.social
www.tudelft.nl/en/hortus-bo...
Need a new genome? Just pick up the phone and “dial-a-genome” 📞🧬 @getgenome.bsky.social
www.tudelft.nl/en/hortus-bo...
I have a new preprint demonstrating a genome-architecture-aware approach to inferring species trees and introgression landscapes from a small number of genomes. If you are interested in phylogenomics, birds, or hybridization, this is for you! www.biorxiv.org/content/10.1...
December 1, 2025 at 7:35 PM
I have a new preprint demonstrating a genome-architecture-aware approach to inferring species trees and introgression landscapes from a small number of genomes. If you are interested in phylogenomics, birds, or hybridization, this is for you! www.biorxiv.org/content/10.1...
New #ISEPpapers #preprint by @deemteam.bsky.social: Re-evaluating the eukaryotic Tree of Life with independent phylogenomic data www.biorxiv.org/content/10.6...
#Protists #Microbes #Evolution #Eukaryotes #TreeOfLife #Phylogeny #Phylogenomics #Bioinformatics #Algae
#Protists #Microbes #Evolution #Eukaryotes #TreeOfLife #Phylogeny #Phylogenomics #Bioinformatics #Algae
April 14, 2026 at 7:37 PM
New #ISEPpapers #preprint by @deemteam.bsky.social: Re-evaluating the eukaryotic Tree of Life with independent phylogenomic data www.biorxiv.org/content/10.6...
#Protists #Microbes #Evolution #Eukaryotes #TreeOfLife #Phylogeny #Phylogenomics #Bioinformatics #Algae
#Protists #Microbes #Evolution #Eukaryotes #TreeOfLife #Phylogeny #Phylogenomics #Bioinformatics #Algae
Sponges back?
Integrative phylogenomics positions sponges at the root of the animal tree. @science.org
#sponges vs #ctenophores
Integrative phylogenomics positions sponges at the root of the animal tree. @science.org
#sponges vs #ctenophores
November 13, 2025 at 7:55 PM
Sponges back?
Integrative phylogenomics positions sponges at the root of the animal tree. @science.org
#sponges vs #ctenophores
Integrative phylogenomics positions sponges at the root of the animal tree. @science.org
#sponges vs #ctenophores
New preprint with Rob Lanfear!
"The meaning and measure of concordance factors in phylogenomics"
ecoevorxiv.org/repository/v...
"The meaning and measure of concordance factors in phylogenomics"
ecoevorxiv.org/repository/v...
January 3, 2024 at 8:07 PM
New preprint with Rob Lanfear!
"The meaning and measure of concordance factors in phylogenomics"
ecoevorxiv.org/repository/v...
"The meaning and measure of concordance factors in phylogenomics"
ecoevorxiv.org/repository/v...
New from the #NearLab, Chase Brownstein chasedbrownstein.bsky.social takes the lead on Phylogenomics and the origins of sharks.
www.biorxiv.org/content/10.6...
www.biorxiv.org/content/10.6...
February 15, 2026 at 2:55 PM
New from the #NearLab, Chase Brownstein chasedbrownstein.bsky.social takes the lead on Phylogenomics and the origins of sharks.
www.biorxiv.org/content/10.6...
www.biorxiv.org/content/10.6...
Sign up for @laymonstera.bsky.social's free ASPT @amsocplanttaxon.bsky.social webinar, "Phylogenomics and macroevolution of a florally diverse Neotropical plant clade," featuring phylogenomics, biogeography, niche & pollinator evolution!
us06web.zoom.us/webinar/regi...
@tropicalbotany.bsky.social
us06web.zoom.us/webinar/regi...
@tropicalbotany.bsky.social
October 15, 2025 at 10:23 PM
Sign up for @laymonstera.bsky.social's free ASPT @amsocplanttaxon.bsky.social webinar, "Phylogenomics and macroevolution of a florally diverse Neotropical plant clade," featuring phylogenomics, biogeography, niche & pollinator evolution!
us06web.zoom.us/webinar/regi...
@tropicalbotany.bsky.social
us06web.zoom.us/webinar/regi...
@tropicalbotany.bsky.social
If you're interested in understanding discordance in phylogenomic analyses, the @evojlinnsoc.bsky.social's special issue 'Phylogenomic Discordance: Patterns, Processes, and Solutions' is for you!
tinyurl.com/v2eces3s
I'll be sharing a few articles a week until we're through the issue! (1/n)🧪
tinyurl.com/v2eces3s
I'll be sharing a few articles a week until we're through the issue! (1/n)🧪
Phylogenomic Discordance: Patterns, Processes, and Solutions
Phylogenomics, the study of evolutionary relationships using genomic data, has revolutionized our understanding of the Tree of Life. As a field, phylogenomics h
academic.oup.com
September 29, 2025 at 4:00 PM
If you're interested in understanding discordance in phylogenomic analyses, the @evojlinnsoc.bsky.social's special issue 'Phylogenomic Discordance: Patterns, Processes, and Solutions' is for you!
tinyurl.com/v2eces3s
I'll be sharing a few articles a week until we're through the issue! (1/n)🧪
tinyurl.com/v2eces3s
I'll be sharing a few articles a week until we're through the issue! (1/n)🧪
I'll be talking about my #ProcB isopod phylogenomics paper in the Royal Society Publishing Ecology & Evolution Online Seminar Series, live (with Q&A) next Weds 26th Feb 2pm (UK).
Please reshare to reach all the lovers of #isopods (& #phylogenomics), who might be interested in their #evolution!
🧪
Please reshare to reach all the lovers of #isopods (& #phylogenomics), who might be interested in their #evolution!
🧪
Adaptation to life on land evolved multiple times in arthropods, but what about isopods? Join us on Weds 26 Feb at 2pm (UK) to hear #ProcB author @jessthorpemas.bsky.social discuss her work on this key ecological transition. Find out more & sign up: cassyni.com/events/VVbok...
February 20, 2025 at 6:05 PM
I'll be talking about my #ProcB isopod phylogenomics paper in the Royal Society Publishing Ecology & Evolution Online Seminar Series, live (with Q&A) next Weds 26th Feb 2pm (UK).
Please reshare to reach all the lovers of #isopods (& #phylogenomics), who might be interested in their #evolution!
🧪
Please reshare to reach all the lovers of #isopods (& #phylogenomics), who might be interested in their #evolution!
🧪
Phylogenomics beyond the ‘bag-of-genes’ model
#evolution #phylogenomics #MicroSky
@cp-trendsgenetics.bsky.social
www.sciencedirect.com/science/arti...
#evolution #phylogenomics #MicroSky
@cp-trendsgenetics.bsky.social
www.sciencedirect.com/science/arti...
Phylogenomics beyond the ‘bag-of-genes’ model
Genome-scale data have transformed phylogenetics, yet most phylogenomic analyses disregard the genomic positions of the loci used to infer evolutionar…
www.sciencedirect.com
May 31, 2026 at 4:07 PM
Phylogenomics beyond the ‘bag-of-genes’ model
#evolution #phylogenomics #MicroSky
@cp-trendsgenetics.bsky.social
www.sciencedirect.com/science/arti...
#evolution #phylogenomics #MicroSky
@cp-trendsgenetics.bsky.social
www.sciencedirect.com/science/arti...