#spatialomics
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giodang.bsky.social
Lipids alone define more than 500 biochemical territories with distinct compositions, which we call lipizones. #SpatialOmics #MassSpectrometryImaging
September 23, 2026 at 3:34 PM
albertvilella.bsky.social
New collaboration between @10xgenomics.bsky.social and Oxford @nanoporetech.com on #SingleCell and #SpatialOmics NGS and software
nanoporetech.com Oxford Nanopore @nanoporetech.com · Feb 23
We're expanding our collaboration with @10xgenomics.bsky.social to enable seamless compatibility between their latest GEM-X chemistry, bringing more accurate, cost-effective, and accessible insights to #singlecell and spatial #transcriptomics research.

Learn more: nanoporetech.com/news/oxford-...
February 24, 2025 at 3:32 PM
albertvilella.bsky.social
In #SingleCell and #SpatialOmics news, Takara Bio US buys Curio Bio.
January 15, 2025 at 8:20 PM
florianschueder.bsky.social
Big news: I’m joining EPFL as Tenure-Track Assistant Professor of Life Science Engineering!
Can’t wait to push super-resolution microscopy & spatial omics even further and build new collaborations in Lausanne. 🚀
#EPFL #SuperResolution #Microscopy #SpatialOmics #DNAPAINT
May 22, 2025 at 1:57 PM
paulvilloutreix.bsky.social
Very exciting approaches for Spatial Biology at #ESSB2024 in Berlin
#SpatialOmics #SpatialBiology #Omics
December 12, 2024 at 10:19 AM
drrobinreschke.bsky.social


Everything #spatialomics - A hub for researchers, clinicians, companies, journals, and institutions exploring spatial omics technologies.

Leave a comment, if you’d like to join 🧬🙂

#SpatialOmics #Visium #Xenium #MERSCOPE #MultiplexIF #MIBI #OmicsResearch #Biotech #Innovation

go.bsky.app/zcDshW
December 8, 2024 at 7:55 PM
lambalastair.bsky.social
Brilliant session focused entirely on spatial multiomics @theaacr.bsky.social #AUA25

Well said @tanevski.bsky.social "Cancer is a spatial disease-spatialomics is the future of cancer science"!

Wonderful composite spatial data from Linghua Wang @mdanderson.bsky.social
www.nature.com/articles/s41...
April 29, 2025 at 8:25 PM
sawitzkilab.bsky.social
Waking up our sleeping beauty!
Super excited to have Xenium and PhenoCycler now running in the same room 🤩

#SpatialOmics #SpatialBiology #SpatialProteomics #SpatialTranscriptomics #Immunology
April 3, 2025 at 9:05 AM
florianschueder.bsky.social
🚨 2 × PhD positions @EPFL! 🚨
Help us push the boundaries of fluorescence microscopy - DNA nanotech, custom optics & spatial omics in Lausanne 🇨🇭. Start Jan 2026. Send CV + motivation + 2 refs → fschueder@ethz.ch
#PhD #Hiring #microscopy #SuperResolution #SpatialOmics #DNAPAINT #FLASHPAINT
July 31, 2025 at 8:56 AM
albertvilella.bsky.social
Interesting publication comparing @10xgenomics.bsky.social Xenium versus @brukercorporation.bsky.social GeoMx #spatialomics #SpatialBiology
haoyin.bsky.social Hao Yin @haoyin.bsky.social · Sep 28
Comparing single-cell #SpatialTranscriptomics methods on FFPE human tumor #TissueMicroArray

CosMx 1k vs MERFISH 500 vs Xenium-UM/-MM 339
93 common genes

lung adenocarcinoma
pleural mesothelioma

Corr. Bulk RNAseq, GeoMx

#NatureComms 2025
www.nature.com/articles/s41...
September 29, 2025 at 9:05 AM
haoyin.bsky.social
#SpatialOmics

Spatial-DMT
Co-profiling spatial #DNAMethylome #Transcriptome🤠

Enzymatic Methyl-seq (pooling 5mC 5hmC)

>100k CpG, >1k gene per 10-μm pixel

Mapping mCG & mCH & transcription factors

@dengyanxiang.bsky.social bioRxiv 2025
www.biorxiv.org/content/10.1...
July 9, 2025 at 11:46 AM
mif-emblbarcelona.bsky.social
🧬 Poster #119 by Jim Swoger at #ELMI2025

“C3PO – Cell 3D Positioning by Optical encoding”

Discover this innovative 3D spatialomics method from the @jamesasharpe.bsky.social lab @embl.org Barcelona

#SpatialOmics #3DTranscriptomics #LightSheet
June 3, 2025 at 9:11 AM
haoyin.bsky.social
#SpatialOmics

MCMICRO
Multiple Choice Microscopy pipeline
mcmicro.org

Multi-channel whole-slide images▶️
Single-cell data + Spatial Feature Tables

Multimodal (CyCIF CODEX mIHC) registration + HE IMC MIBI

#NatMethods 2022
www.nature.com/articles/s41...
October 12, 2025 at 12:21 PM
natmetabolism.nature.com
✨New issue✨

Check out the latest in #Metabolism research from across all disciplines.

Read about #AdiposeTissue, #EVs, #Incretins, #Immune cells, #LiverMetabolism, #MitochondrialMetabolism, #SpatialOmics, #Tumorbiology and many more topics! 🧪

http://dlvr.it/TRmC3C
March 29, 2026 at 4:01 PM
haoyin.bsky.social
#SpatialOmics

STAnalyzer
Human-in-the-Loop Multi-agent (Orchestrator/Service Planner/Data Interpretation/Knowledge Integration) framework

www.sdu-idea.cn/STAnalyzer/

Work on Visium Xenium

From raw counts to hypothesis generation

bioRxiv 2026
www.biorxiv.org/content/10.6...
April 19, 2026 at 11:12 AM
mscience.bsky.social
Together with @10xgenomics.bsky.social, we're proud sponsors once again of the @wehi-research.bsky.social Spatial Technologies Symposium. Bring on 2 days of #SpatialOmics!
June 5, 2025 at 5:14 AM
huntermeetingoz.bsky.social
The Hunter Meeting has made it to the blue place! 🔵 If you are joining us in the beautiful #HunterValley 2-5 June 2025 - please tag us or search #HunterMeetingOz to follow along. #STEM #CellBiology #DevBio #SpatialOmics @anzscdb.bsky.social #AustralianMeeting
May 19, 2025 at 2:18 AM
yghavi.bsky.social
🚨Preprint alert!
tinyurl.com/2zkmynsd
Did you ever dream of reconstruction #spatial single-cell #enhancer activity in a multicellular organism using massively parallel enhancer-reporter assays?
Then Spatial-scERA is the method for you!
#spatialOMICs
Spatial reconstruction of single-cell enhancer activity in a multicellular organism
Enhancers play an essential role in developmental processes by orchestrating the spatial and temporal regulation of gene expression. However, mapping the location of these regulatory elements in the g...
tinyurl.com
November 18, 2024 at 11:05 AM
nerdygeekgirl.bsky.social
I highly recommend adding tonsil core(s) when creating tissue microarrays (TMAs) with human tissues. They have almost all the immune cells, structural cells, etc. for a robust positive control for #SpatialBiology.🧪🔬 #science #histology #SpatialOmics #SpatialProteomics (1/3)
March 4, 2025 at 6:31 AM
natcancer.nature.com
⭐️If you haven't yet done so, check out our 2024 year-in-review Focus Issue now!

🔗https://nature.com/collections/chiegfhchj

Featuring:
*Editorial on 2024 #cancerresearch highlights
*#newPIs Viewpoint
*#AI and #spatialomics in #oncology
*(CAR-)T cell therapies in cancer
*12 Research Highlights
December 20, 2024 at 12:11 PM
scverse.bsky.social
🔬 CZI Workshop at scverse 2025 🔬

Multimodal And Spatial Single Cell Data: From Data APIs to AI-driven Biological Discovery
🧵

@chanzuckerberg.bsky.social
#scverse2025 #SingleCell #SpatialOmics #CELLxGENE #VirtualCells #AIBiology
September 4, 2025 at 3:03 PM
haoyin.bsky.social
SpatialData
spatialdata.scverse.org/en/latest/

Establish a global common coordinate framework->
Multi-modal #SpatialOmics integration
Align multislice for 3D #SpatialOmics

Work with
(RNA) Visium Xenium CosMx MEFISH
(protein) CycIF MIBI-TOF IMC

#Naturemethods 2024
www.nature.com/articles/s41...
March 22, 2024 at 11:37 AM
mragsac.com
Amazing work by all to improve #SpatialOmics and #SpatialBiology software ! 🤩 Science hackathons seem super fun and a great way to collaboratively enhance bioinformatics software! ✨👩🏽‍💻

Tagging #SciSky 🧪 and the #Bioinformatics 🧬💻 feeds too for more visibility 🙌🏽
scverse.bsky.social scverse @scverse.bsky.social · Jan 20
Recently, we held the first #scverse SpatialData 3-day hackathon in Basel (Switzerland), where we brought together 20 developers from the Python, R, and web communities to work on interoperability, performance, and ergonomics for spatial omics data. Here is what we worked on!
outside picture showing the 20 participants of the SpatialData basel hackathon. some participants while working at their laptops. some other participants while working at their laptops.
January 20, 2025 at 6:05 PM
haoyin.bsky.social
#SpatialOmics

SpatioMark
R::Statial

Work with Xenium CODEX MIBI-TOF

Quantify spatial proximity of one cell type to another with Distance or cell Abundance

Denoising segmentation artefacts

Fits a linear model b/w spatial proximity & cell marker level

bioRxiv 2024
www.biorxiv.org/content/10.1...
December 10, 2024 at 8:06 PM
zehemminger.bsky.social
Presenting at ASCB CellBio24 in San Diego this Monday about my grad work where we mapped over 40 million cells spatially using our novel ATLAS approach that is 10X Faster and 10X Lower Cost!
#CellBio2024 #CellBio24 #ASCB24 #SpatialOmics #SingleCell #imaging #microscopy #biotech
December 13, 2024 at 6:45 PM