🚨 Fully Funded DPhil at the University of Oxford 🚨
🔬🧬 💻 4-Year Kennedy Trust Prize Studentship in Spatial Mechanomics of Multi-Organ Fibrosis.
Passionate about cutting-edge #SpatialOmics & uncovering the mechanisms driving disease? Join us @kiroxford.bsky.social !
shorturl.at/J2RBB
🔬🧬 💻 4-Year Kennedy Trust Prize Studentship in Spatial Mechanomics of Multi-Organ Fibrosis.
Passionate about cutting-edge #SpatialOmics & uncovering the mechanisms driving disease? Join us @kiroxford.bsky.social !
shorturl.at/J2RBB
November 7, 2026 at 10:26 AM
🚨 Fully Funded DPhil at the University of Oxford 🚨
🔬🧬 💻 4-Year Kennedy Trust Prize Studentship in Spatial Mechanomics of Multi-Organ Fibrosis.
Passionate about cutting-edge #SpatialOmics & uncovering the mechanisms driving disease? Join us @kiroxford.bsky.social !
shorturl.at/J2RBB
🔬🧬 💻 4-Year Kennedy Trust Prize Studentship in Spatial Mechanomics of Multi-Organ Fibrosis.
Passionate about cutting-edge #SpatialOmics & uncovering the mechanisms driving disease? Join us @kiroxford.bsky.social !
shorturl.at/J2RBB
Are you interested in #SpatialOmics? Are you developing a method or a pipeline for your data? Or are you just curious how well foundation models really work in SCG?
🧬 Join us Dec 7-11 for the next #OpenProblems hackathon joint with SPACEHACK 5.0.
www.denbi.de/de-nbi-event...
🧬 Join us Dec 7-11 for the next #OpenProblems hackathon joint with SPACEHACK 5.0.
www.denbi.de/de-nbi-event...
https://denbi.de/de-nbi-events/…
November 6, 2026 at 8:04 AM
Are you interested in #SpatialOmics? Are you developing a method or a pipeline for your data? Or are you just curious how well foundation models really work in SCG?
🧬 Join us Dec 7-11 for the next #OpenProblems hackathon joint with SPACEHACK 5.0.
www.denbi.de/de-nbi-event...
🧬 Join us Dec 7-11 for the next #OpenProblems hackathon joint with SPACEHACK 5.0.
www.denbi.de/de-nbi-event...
DIRAC (Boxiang Liu lab, Nature Methods 2026): a graph neural network that integrates spatial multi-omic data into a domain-invariant embedding and transfers cell-type labels across studies. pip install sodirac. AGPL-3.0, non-commercial. toolome.bio/tools/dirac/ #SpatialOmics #GNN
November 9, 2026 at 4:14 PM
DIRAC (Boxiang Liu lab, Nature Methods 2026): a graph neural network that integrates spatial multi-omic data into a domain-invariant embedding and transfers cell-type labels across studies. pip install sodirac. AGPL-3.0, non-commercial. toolome.bio/tools/dirac/ #SpatialOmics #GNN
#TropicalPlants
Single-cell and spatial multi-omics reveal plant cellular heterogeneity while preserving critical tissue context
Details: https://maxapress.com/article/doi/10.48130/tp-0026-0024
#SpatialOmics #SingleCell
Single-cell and spatial multi-omics reveal plant cellular heterogeneity while preserving critical tissue context
Details: https://maxapress.com/article/doi/10.48130/tp-0026-0024
#SpatialOmics #SingleCell
November 5, 2026 at 4:47 AM
#TropicalPlants
Single-cell and spatial multi-omics reveal plant cellular heterogeneity while preserving critical tissue context
Details: https://maxapress.com/article/doi/10.48130/tp-0026-0024
#SpatialOmics #SingleCell
Single-cell and spatial multi-omics reveal plant cellular heterogeneity while preserving critical tissue context
Details: https://maxapress.com/article/doi/10.48130/tp-0026-0024
#SpatialOmics #SingleCell
CORAL (Nature Genetics, 2026-11-05): James Zou's lab (Stanford) graph-attention model integrates spatial transcriptomics, proteomics, metabolomics and epigenomics, then deconvolves to single-cell profiles. BSD-3-Clause. toolome.bio/tools/coral/ #SpatialOmics #Multiomics
CORAL: license, commercial use, paper — Spatial omics | Toolome
CORAL: Graph-attention deep generative model that integrates spatial transcriptomics, proteomics, metabolomics and epigenomics across resolutions, deconvolving to single-cell profiles and inferring ni...
toolome.bio
November 8, 2026 at 4:13 AM
CORAL (Nature Genetics, 2026-11-05): James Zou's lab (Stanford) graph-attention model integrates spatial transcriptomics, proteomics, metabolomics and epigenomics, then deconvolves to single-cell profiles. BSD-3-Clause. toolome.bio/tools/coral/ #SpatialOmics #Multiomics
CellART from Can Yang's lab at HKUST (Nature Computational Science, 2026): one framework for cell segmentation and cell-type annotation in high-res spatial transcriptomics like Xenium and Visium HD. MIT license. No signup: toolome.bio/tools/cellart/ #SpatialOmics #SingleCell
November 5, 2026 at 4:18 AM
CellART from Can Yang's lab at HKUST (Nature Computational Science, 2026): one framework for cell segmentation and cell-type annotation in high-res spatial transcriptomics like Xenium and Visium HD. MIT license. No signup: toolome.bio/tools/cellart/ #SpatialOmics #SingleCell
This month's Nature Methods cover: A deep learning method finds disease-linked tissue patterns in spatial molecular data without needing cell-type or niche labels.
Related papers below 👇
Personalise your paper feed at www.thepaperspray.com/bsky
#SpatialOmics #SingleCell #ComputationalBiology
Related papers below 👇
Personalise your paper feed at www.thepaperspray.com/bsky
#SpatialOmics #SingleCell #ComputationalBiology
Flexible discovery of disease-associated tissue structures
Identification of disease-associated patterns in spatial molecular data is challenging. We introduce variational inference-based microniche analysis (VIMA), a deep learning-based statistical method that can identify such patterns without requiring annotation of the data into cell types or niches. VIMA has high power and fidelity across a range of spatial molecular technologies and diseases.
www.nature.com
November 6, 2026 at 2:01 PM
This month's Nature Methods cover: A deep learning method finds disease-linked tissue patterns in spatial molecular data without needing cell-type or niche labels.
Related papers below 👇
Personalise your paper feed at www.thepaperspray.com/bsky
#SpatialOmics #SingleCell #ComputationalBiology
Related papers below 👇
Personalise your paper feed at www.thepaperspray.com/bsky
#SpatialOmics #SingleCell #ComputationalBiology
👏New Perspective in EXO - Beyond the Cell!
Title: Beyond slides: The era of 3D histology
Explore how volumetric imaging, spatial omics, label-free imaging, and AI are moving pathology beyond 2D slides: sciexplor.com/exo/articles...
#3DHistology #SpatialOmics #DigitalPathology #AI
Title: Beyond slides: The era of 3D histology
Explore how volumetric imaging, spatial omics, label-free imaging, and AI are moving pathology beyond 2D slides: sciexplor.com/exo/articles...
#3DHistology #SpatialOmics #DigitalPathology #AI
October 26, 2026 at 1:27 AM
👏New Perspective in EXO - Beyond the Cell!
Title: Beyond slides: The era of 3D histology
Explore how volumetric imaging, spatial omics, label-free imaging, and AI are moving pathology beyond 2D slides: sciexplor.com/exo/articles...
#3DHistology #SpatialOmics #DigitalPathology #AI
Title: Beyond slides: The era of 3D histology
Explore how volumetric imaging, spatial omics, label-free imaging, and AI are moving pathology beyond 2D slides: sciexplor.com/exo/articles...
#3DHistology #SpatialOmics #DigitalPathology #AI
Was Zellen tun, hängt auch davon ab, wo sie im Gewebe liegen. Neue Methoden der räumlichen Multi-Omik macht Transkripte inzwischen bis zur subzellulären Ebene sichtbar. Die große Baustelle bleibt 3D … — Unser Artikel dazu: 👉 www.laborjournal.de/rubric/metho...
#SpatialOmics #Transkriptomik
#SpatialOmics #Transkriptomik
October 23, 2026 at 10:15 AM
Was Zellen tun, hängt auch davon ab, wo sie im Gewebe liegen. Neue Methoden der räumlichen Multi-Omik macht Transkripte inzwischen bis zur subzellulären Ebene sichtbar. Die große Baustelle bleibt 3D … — Unser Artikel dazu: 👉 www.laborjournal.de/rubric/metho...
#SpatialOmics #Transkriptomik
#SpatialOmics #Transkriptomik
As more scientific analysis is handed to agents, keeping humans in the loop matters even more. Someone still needs to look at the tissue and ask, “Does this make sense?” Explore milume: ckmah.github.io/milume
What would you explore first in 3D? #spatialomics #spatialbiology
3/3
What would you explore first in 3D? #spatialomics #spatialbiology
3/3
milume: explore spatial biology in your notebook
Layer images, cells, and transcripts in 3D, in one reactive widget.
ckmah.github.io
October 21, 2026 at 4:22 AM
As more scientific analysis is handed to agents, keeping humans in the loop matters even more. Someone still needs to look at the tissue and ask, “Does this make sense?” Explore milume: ckmah.github.io/milume
What would you explore first in 3D? #spatialomics #spatialbiology
3/3
What would you explore first in 3D? #spatialomics #spatialbiology
3/3
🎞🎞🎞️ La biologie spatiale ne repose pas sur une seule technologie. Elle s’enrichit de perspectives diversifiées!
Dans cette nouvelle vidéo, Nikol s’entretient avec Shamini dans le cadre de FSO2026 - Foundational Spatial Omics Workshop.
www.linkedin.com/feed/update/...
Dans cette nouvelle vidéo, Nikol s’entretient avec Shamini dans le cadre de FSO2026 - Foundational Spatial Omics Workshop.
www.linkedin.com/feed/update/...
#panoramics #theenlightenmechapter #fso2026 #spatialbiology #spatialomics #singlecell #bioinformatics #scientificeducation #lifesciences #canada | PANORAMICS - A Vision INC.
🎞🎞🎞️ La biologie spatiale ne repose pas sur une seule technologie. Elle s’enrichit de perspectives diversifiées!
👉 Pourquoi explorer cinq plateformes différentes de biologie spatiale plutôt que de se ...
www.linkedin.com
October 16, 2026 at 2:30 PM
🎞🎞🎞️ La biologie spatiale ne repose pas sur une seule technologie. Elle s’enrichit de perspectives diversifiées!
Dans cette nouvelle vidéo, Nikol s’entretient avec Shamini dans le cadre de FSO2026 - Foundational Spatial Omics Workshop.
www.linkedin.com/feed/update/...
Dans cette nouvelle vidéo, Nikol s’entretient avec Shamini dans le cadre de FSO2026 - Foundational Spatial Omics Workshop.
www.linkedin.com/feed/update/...
🎞🎞🎞️ Spatial biology is not driven by a single technology. It thrives on diverse perspectives!
In this new video, Nikol sits down with Shamini to explore the thinking behind the platform-agnostic approach of FSO2026 - Foundational Spatial Omics Workshop: www.linkedin.com/feed/update/...
In this new video, Nikol sits down with Shamini to explore the thinking behind the platform-agnostic approach of FSO2026 - Foundational Spatial Omics Workshop: www.linkedin.com/feed/update/...
#panoramics #theenlightenmechapter #fso2026 #spatialbiology #spatialomics #singlecell #bioinformatics #scientificeducation #lifesciences #canada | PANORAMICS - A Vision INC.
🎞🎞🎞️ Spatial biology is not driven by a single technology. It thrives on diverse perspectives!
👉 Why explore five different spatial biology platforms instead of focusing on just one? Because every tec...
www.linkedin.com
October 16, 2026 at 2:22 PM
🎞🎞🎞️ Spatial biology is not driven by a single technology. It thrives on diverse perspectives!
In this new video, Nikol sits down with Shamini to explore the thinking behind the platform-agnostic approach of FSO2026 - Foundational Spatial Omics Workshop: www.linkedin.com/feed/update/...
In this new video, Nikol sits down with Shamini to explore the thinking behind the platform-agnostic approach of FSO2026 - Foundational Spatial Omics Workshop: www.linkedin.com/feed/update/...
🎞🎞 Dans cette nouvelle vidéo, Nikol de PANORAMICS donne un aperçu des concepts explorés pendant les sessions et de ce qui attendait les participants pour la suite de cette expérience d’apprentissage.
www.linkedin.com/feed/update/...
www.linkedin.com/feed/update/...
#panoramics #theenlightenmechapter #fso2026 #spatialbiology #spatialomics #biologicaltopography #singlecell #bioinformatics #scientificeducation #lifesciences #canada | PANORAMICS - A Vision INC.
🎞🎞 La biologie spatiale nous invite à voir encore plus loin!
👉 Des tissus de qualité aux choix expérimentaux, de l’interprétation des structures spatiales à l’évaluation critique des analyses : chaque...
www.linkedin.com
October 13, 2026 at 3:18 PM
🎞🎞 Dans cette nouvelle vidéo, Nikol de PANORAMICS donne un aperçu des concepts explorés pendant les sessions et de ce qui attendait les participants pour la suite de cette expérience d’apprentissage.
www.linkedin.com/feed/update/...
www.linkedin.com/feed/update/...
🎞🎞 In this new video, Nikol has a look at the concepts explored during the sessions and what participants could look forward to next in this learning experience.
Welcome to the Enlighten-Me Chapter by PANORAMICS!
www.linkedin.com/feed/update/...
Welcome to the Enlighten-Me Chapter by PANORAMICS!
www.linkedin.com/feed/update/...
#panoramics #theenlightenmechapter #fso2026 #spatialbiology #spatialomics #biologicaltopography #singlecell #bioinformatics #scientificeducation #lifesciences #canada | PANORAMICS - A Vision INC.
🎞🎞 Spatial biology invites us to look even further!
👉 From tissue quality and experimental design to interpreting spatial structures and critically evaluating analyses, every step matters when it come...
www.linkedin.com
October 13, 2026 at 3:28 PM
🎞🎞 In this new video, Nikol has a look at the concepts explored during the sessions and what participants could look forward to next in this learning experience.
Welcome to the Enlighten-Me Chapter by PANORAMICS!
www.linkedin.com/feed/update/...
Welcome to the Enlighten-Me Chapter by PANORAMICS!
www.linkedin.com/feed/update/...
👉 La semaine dernière, nous avons ouvert les portes de FSO2026 - Foundational Spatial Omics Workshop. Dans la vidéo qui suit, Nikol Leshchyshyn, nous fait découvrir les coulisses de la première journée.
+infos: www.linkedin.com/feed/update/...
+infos: www.linkedin.com/feed/update/...
#panoramics #theenlightenmechapter #fso2026 #spatialbiology #spatialomics #biologicaltopography #singlecell #bioinformatics #scientificeducation #lifesciences #canada | PANORAMICS - A Vision INC.
🚀 Une semaine plus tard… et l’apprentissage continue!
👉 La semaine dernière, nous avons ouvert les portes de FSO2026 - Foundational Spatial Omics Workshop, une expérience d’apprentissage de trois jour...
www.linkedin.com
October 8, 2026 at 4:20 PM
👉 La semaine dernière, nous avons ouvert les portes de FSO2026 - Foundational Spatial Omics Workshop. Dans la vidéo qui suit, Nikol Leshchyshyn, nous fait découvrir les coulisses de la première journée.
+infos: www.linkedin.com/feed/update/...
+infos: www.linkedin.com/feed/update/...
🚀 One week later… and the learning continues.
👉 Last week, we opened the doors to FSO2026 - the Foundational Spatial Omics Workshop. In the following video, Nikol Leshchyshynshares what the Enlighten-Me Chapter is all about!
+info: www.linkedin.com/feed/update/...
👉 Last week, we opened the doors to FSO2026 - the Foundational Spatial Omics Workshop. In the following video, Nikol Leshchyshynshares what the Enlighten-Me Chapter is all about!
+info: www.linkedin.com/feed/update/...
#panoramics #theenlightenmechapter #fso2026 #spatialbiology #spatialomics #biologicaltopography #singlecell #bioinformatics #scientificeducation #lifesciences #canada | PANORAMICS - A Vision INC.
🚀 One week later… and the learning continues.
👉 Last week, we opened the doors to FSO2026 - the Foundational Spatial Omics Workshop, a 3-day, platform-agnostic learning experience built around one ide...
www.linkedin.com
October 8, 2026 at 4:10 PM
🚀 One week later… and the learning continues.
👉 Last week, we opened the doors to FSO2026 - the Foundational Spatial Omics Workshop. In the following video, Nikol Leshchyshynshares what the Enlighten-Me Chapter is all about!
+info: www.linkedin.com/feed/update/...
👉 Last week, we opened the doors to FSO2026 - the Foundational Spatial Omics Workshop. In the following video, Nikol Leshchyshynshares what the Enlighten-Me Chapter is all about!
+info: www.linkedin.com/feed/update/...
(1/2) Great 4 days at the 3rd #ESSB Conference in #Sitges! Fantastic opportunity to catch up with old friends, meet new colleagues, and dive into the latest technologies and discoveries in #SpatialOmics. Congratulations to the organizers for a brilliant event! @irbbarcelona.org
October 5, 2026 at 3:31 PM
(1/2) Great 4 days at the 3rd #ESSB Conference in #Sitges! Fantastic opportunity to catch up with old friends, meet new colleagues, and dive into the latest technologies and discoveries in #SpatialOmics. Congratulations to the organizers for a brilliant event! @irbbarcelona.org
(2/2) Proud to present our new #SpatialOmics platform w/ Aina Bonet & highlight our advances in MS-based #SpatialProteomics (Poster 1 - Session 2). Looking forward to future collaborations!
#MALDIImaging
#DeepVisualProteomics
#SpatialTranscriptomics
#IRBBarcelonaResearchTechnologies
#ESSB
#MALDIImaging
#DeepVisualProteomics
#SpatialTranscriptomics
#IRBBarcelonaResearchTechnologies
#ESSB
October 5, 2026 at 3:36 PM
(2/2) Proud to present our new #SpatialOmics platform w/ Aina Bonet & highlight our advances in MS-based #SpatialProteomics (Poster 1 - Session 2). Looking forward to future collaborations!
#MALDIImaging
#DeepVisualProteomics
#SpatialTranscriptomics
#IRBBarcelonaResearchTechnologies
#ESSB
#MALDIImaging
#DeepVisualProteomics
#SpatialTranscriptomics
#IRBBarcelonaResearchTechnologies
#ESSB
Many thanks to everyone who contributed to the work and to the reviewers for helping us strengthen the study.
#SpatialOmics #SpatialBiology #GraphNeuralNetworks #ExplainableAI #ComputationalBiology #CancerResearch
#SpatialOmics #SpatialBiology #GraphNeuralNetworks #ExplainableAI #ComputationalBiology #CancerResearch
September 29, 2026 at 8:54 AM
Many thanks to everyone who contributed to the work and to the reviewers for helping us strengthen the study.
#SpatialOmics #SpatialBiology #GraphNeuralNetworks #ExplainableAI #ComputationalBiology #CancerResearch
#SpatialOmics #SpatialBiology #GraphNeuralNetworks #ExplainableAI #ComputationalBiology #CancerResearch
Lipids alone define more than 500 biochemical territories with distinct compositions, which we call lipizones. #SpatialOmics #MassSpectrometryImaging
September 23, 2026 at 3:34 PM
Lipids alone define more than 500 biochemical territories with distinct compositions, which we call lipizones. #SpatialOmics #MassSpectrometryImaging
Many thanks to Tim, Robert & the @scverse.bsky.social team for a great workshop! We learned a lot about #SpatialOmics and data analysis.
Thanks to everyone who joined us this week, and best of luck with your projects! 🚀🧬
Thanks to everyone who joined us this week, and best of luck with your projects! 🚀🧬
September 17, 2026 at 1:46 PM
Many thanks to Tim, Robert & the @scverse.bsky.social team for a great workshop! We learned a lot about #SpatialOmics and data analysis.
Thanks to everyone who joined us this week, and best of luck with your projects! 🚀🧬
Thanks to everyone who joined us this week, and best of luck with your projects! 🚀🧬
Many thanks to @canergen.bsky.social for a very interesting lecture and hands-on session this afternoon on ResoIVI and scVIVA during the #SpatialOmics @scverse.bsky.social workshop!
Great to learn more about these approaches and see them in action
www.physalia-courses.org/courses-work...
Great to learn more about these approaches and see them in action
www.physalia-courses.org/courses-work...
September 16, 2026 at 2:16 PM
Many thanks to @canergen.bsky.social for a very interesting lecture and hands-on session this afternoon on ResoIVI and scVIVA during the #SpatialOmics @scverse.bsky.social workshop!
Great to learn more about these approaches and see them in action
www.physalia-courses.org/courses-work...
Great to learn more about these approaches and see them in action
www.physalia-courses.org/courses-work...
🚀 We’re fully booked!
Very excited to kick off this course on #SpatialOmics, in collaboration with @scverse.bsky.social
This week, Tim Treis and Robert Gutgesell from @fabiantheis.bsky.social @helmholtzmunich.bsky.social will take us on a hands-on journey through the analysis of spatial omics data
Very excited to kick off this course on #SpatialOmics, in collaboration with @scverse.bsky.social
This week, Tim Treis and Robert Gutgesell from @fabiantheis.bsky.social @helmholtzmunich.bsky.social will take us on a hands-on journey through the analysis of spatial omics data
September 15, 2026 at 12:49 PM
🚀 We’re fully booked!
Very excited to kick off this course on #SpatialOmics, in collaboration with @scverse.bsky.social
This week, Tim Treis and Robert Gutgesell from @fabiantheis.bsky.social @helmholtzmunich.bsky.social will take us on a hands-on journey through the analysis of spatial omics data
Very excited to kick off this course on #SpatialOmics, in collaboration with @scverse.bsky.social
This week, Tim Treis and Robert Gutgesell from @fabiantheis.bsky.social @helmholtzmunich.bsky.social will take us on a hands-on journey through the analysis of spatial omics data
Weekly reads 7/9/26 :
How spatial transcriptomics, metastasis secrets, and yeast are redefining cancer research
behindthebioinformatics.substack.com/p/weekly-rea...
#SpatialOmics #CancerResearch #SyntheticBiology #Metastasis #DrugProduction
How spatial transcriptomics, metastasis secrets, and yeast are redefining cancer research
behindthebioinformatics.substack.com/p/weekly-rea...
#SpatialOmics #CancerResearch #SyntheticBiology #Metastasis #DrugProduction
Weekly reads 7/9/26
How spatial transcriptomics, metastasis secrets, and yeast are redefining cancer research
behindthebioinformatics.substack.com
September 13, 2026 at 10:50 AM
Weekly reads 7/9/26 :
How spatial transcriptomics, metastasis secrets, and yeast are redefining cancer research
behindthebioinformatics.substack.com/p/weekly-rea...
#SpatialOmics #CancerResearch #SyntheticBiology #Metastasis #DrugProduction
How spatial transcriptomics, metastasis secrets, and yeast are redefining cancer research
behindthebioinformatics.substack.com/p/weekly-rea...
#SpatialOmics #CancerResearch #SyntheticBiology #Metastasis #DrugProduction
(2/2) Congratulations to Fabian Coscia @coscialab.bsky.social for the great organization and collaborative spirit! And congrats to all the young scientists contributing to this new era of #SingleCell & #SpatialOmics technologies.
September 8, 2026 at 3:03 PM
(2/2) Congratulations to Fabian Coscia @coscialab.bsky.social for the great organization and collaborative spirit! And congrats to all the young scientists contributing to this new era of #SingleCell & #SpatialOmics technologies.