Reposted by napari
Proud to present the publication of napari-lattice – our solution to the immense computational requirements of Lattice Light Sheet and Oblique Plane Microscopy.
onlinelibrary.wiley.com/doi/10.1111/...
Before I get into the thread, the important part is on github:
github.com/BioimageAnal...
(1/n)
onlinelibrary.wiley.com/doi/10.1111/...
Before I get into the thread, the important part is on github:
github.com/BioimageAnal...
(1/n)
napari‐lattice: A user‐friendly image processing tool for lattice light‐sheet microscopy data
Lattice light-sheet microscopy (LLSM) enables researchers to capture high-speed 3D videos of living cells with high definition and minimal damage. However, this technology generates terabytes of data....
onlinelibrary.wiley.com
September 10, 2026 at 12:10 AM
Proud to present the publication of napari-lattice – our solution to the immense computational requirements of Lattice Light Sheet and Oblique Plane Microscopy.
onlinelibrary.wiley.com/doi/10.1111/...
Before I get into the thread, the important part is on github:
github.com/BioimageAnal...
(1/n)
onlinelibrary.wiley.com/doi/10.1111/...
Before I get into the thread, the important part is on github:
github.com/BioimageAnal...
(1/n)
Reposted by napari
Even with all the advancements in automated cell tracking getting us to 90%+ accuracy...that's still a lot of broken tracks over long movies!
Our brains are pretty good at this so I made Vizsla 🐕, a little @napari.org plugin, to help you fix your tracks manually.
👉 pypi.org/project/napa...
Our brains are pretty good at this so I made Vizsla 🐕, a little @napari.org plugin, to help you fix your tracks manually.
👉 pypi.org/project/napa...
September 6, 2026 at 1:09 AM
Even with all the advancements in automated cell tracking getting us to 90%+ accuracy...that's still a lot of broken tracks over long movies!
Our brains are pretty good at this so I made Vizsla 🐕, a little @napari.org plugin, to help you fix your tracks manually.
👉 pypi.org/project/napa...
Our brains are pretty good at this so I made Vizsla 🐕, a little @napari.org plugin, to help you fix your tracks manually.
👉 pypi.org/project/napa...
🚨🚨🚨 napari 0.9.0 is out! 🚨🚨🚨
This is a huge release for us and for our community, with over 30 people contributing new features, improvements, and bug fixes in the 6 weeks since 0.8.0! Release notes here:
napari.org/stable/relea...
and some highlights in the thread below! 👇
This is a huge release for us and for our community, with over 30 people contributing new features, improvements, and bug fixes in the 6 weeks since 0.8.0! Release notes here:
napari.org/stable/relea...
and some highlights in the thread below! 👇
napari 0.9.0
Tue, Aug 25, 2026 We’re happy to announce the release of napari 0.9.0! napari is a fast, interactive, multi-dimensional image viewer for Python. It’s designed for browsing, annotating, and analyzing l...
napari.org
August 26, 2026 at 10:39 AM
🚨🚨🚨 napari 0.9.0 is out! 🚨🚨🚨
This is a huge release for us and for our community, with over 30 people contributing new features, improvements, and bug fixes in the 6 weeks since 0.8.0! Release notes here:
napari.org/stable/relea...
and some highlights in the thread below! 👇
This is a huge release for us and for our community, with over 30 people contributing new features, improvements, and bug fixes in the 6 weeks since 0.8.0! Release notes here:
napari.org/stable/relea...
and some highlights in the thread below! 👇
Reposted by napari
Hi all,
I updated pypi.org/project/czit... (0.21.0) and pypi.org/project/napa... (0.12.1) again.
Now in @napari.org also opening large CZI files should work much better when using the plugin.
The image shown in the video is about 100 GB on disk.
I updated pypi.org/project/czit... (0.21.0) and pypi.org/project/napa... (0.12.1) again.
Now in @napari.org also opening large CZI files should work much better when using the plugin.
The image shown in the video is about 100 GB on disk.
August 24, 2026 at 4:21 PM
Hi all,
I updated pypi.org/project/czit... (0.21.0) and pypi.org/project/napa... (0.12.1) again.
Now in @napari.org also opening large CZI files should work much better when using the plugin.
The image shown in the video is about 100 GB on disk.
I updated pypi.org/project/czit... (0.21.0) and pypi.org/project/napa... (0.12.1) again.
Now in @napari.org also opening large CZI files should work much better when using the plugin.
The image shown in the video is about 100 GB on disk.
Sizzling Summer Series 4 - global 🌍️
napari 0.9.0 is about ready to fly out the door! ✈️
We would be grateful if you tried out the pre-release:
Install into an environment with `pip install "napari[all]>=0.9.0rc1"` or try with uv in a temp environment with `uvx "napari[all]>=0.9.0rc1"`.
napari 0.9.0 is about ready to fly out the door! ✈️
We would be grateful if you tried out the pre-release:
Install into an environment with `pip install "napari[all]>=0.9.0rc1"` or try with uv in a temp environment with `uvx "napari[all]>=0.9.0rc1"`.
August 20, 2026 at 5:14 AM
Sizzling Summer Series 4 - global 🌍️
napari 0.9.0 is about ready to fly out the door! ✈️
We would be grateful if you tried out the pre-release:
Install into an environment with `pip install "napari[all]>=0.9.0rc1"` or try with uv in a temp environment with `uvx "napari[all]>=0.9.0rc1"`.
napari 0.9.0 is about ready to fly out the door! ✈️
We would be grateful if you tried out the pre-release:
Install into an environment with `pip install "napari[all]>=0.9.0rc1"` or try with uv in a temp environment with `uvx "napari[all]>=0.9.0rc1"`.
Reposted by napari
One cool feature in the latest #ome-zarr spec are "projectAxis" transforms 📽️: Projecting images into higher dims (i.e. 2D->3D) is absolutely transformative for some use cases! Now to do this with maaaany more slides 🔬
Dataset from rodare.hzdr.de/record/3131
cc @napari.org
Dataset from rodare.hzdr.de/record/3131
cc @napari.org
August 17, 2026 at 2:26 PM
One cool feature in the latest #ome-zarr spec are "projectAxis" transforms 📽️: Projecting images into higher dims (i.e. 2D->3D) is absolutely transformative for some use cases! Now to do this with maaaany more slides 🔬
Dataset from rodare.hzdr.de/record/3131
cc @napari.org
Dataset from rodare.hzdr.de/record/3131
cc @napari.org
Sizzling Summer Series 3 - naPLari Hackathon, Kraków 🇵🇱
A lucky crew of 13 got to spend 6 jam-packed sunny days inside pumping out a fantastical assortment of napari features 🖥️
It was a ☕️ caffeine-, string 🧀 cheese- and 🥟 pierogi-fuelled extravaganza 🎊
A lucky crew of 13 got to spend 6 jam-packed sunny days inside pumping out a fantastical assortment of napari features 🖥️
It was a ☕️ caffeine-, string 🧀 cheese- and 🥟 pierogi-fuelled extravaganza 🎊
August 13, 2026 at 8:15 PM
Sizzling Summer Series 3 - naPLari Hackathon, Kraków 🇵🇱
A lucky crew of 13 got to spend 6 jam-packed sunny days inside pumping out a fantastical assortment of napari features 🖥️
It was a ☕️ caffeine-, string 🧀 cheese- and 🥟 pierogi-fuelled extravaganza 🎊
A lucky crew of 13 got to spend 6 jam-packed sunny days inside pumping out a fantastical assortment of napari features 🖥️
It was a ☕️ caffeine-, string 🧀 cheese- and 🥟 pierogi-fuelled extravaganza 🎊
Sizzling Summer Series 2: Minneapolis -> Kraków ✈️
We talked, tutorialed and sprinted at EuroPython! The sprints WENT OFF -- 22 merged PRs don't lie 🤯
Then rinse repeat for EuroSciPy - our first conference as platinum sponsors!
💐THANK YOU💐 to those who joined us in Kraków!
We talked, tutorialed and sprinted at EuroPython! The sprints WENT OFF -- 22 merged PRs don't lie 🤯
Then rinse repeat for EuroSciPy - our first conference as platinum sponsors!
💐THANK YOU💐 to those who joined us in Kraków!
August 12, 2026 at 8:15 PM
Sizzling Summer Series 2: Minneapolis -> Kraków ✈️
We talked, tutorialed and sprinted at EuroPython! The sprints WENT OFF -- 22 merged PRs don't lie 🤯
Then rinse repeat for EuroSciPy - our first conference as platinum sponsors!
💐THANK YOU💐 to those who joined us in Kraków!
We talked, tutorialed and sprinted at EuroPython! The sprints WENT OFF -- 22 merged PRs don't lie 🤯
Then rinse repeat for EuroSciPy - our first conference as platinum sponsors!
💐THANK YOU💐 to those who joined us in Kraków!
July was a whirlwind 🌪️ Join us for a Sizzling Summer Series of posts highlighting the community's amazing work💪
First, @timmonko.bsky.social, @aganders3.bsky.social and @willingc.bsky.social took on Minneapolis for SciPy 2026 with a tutorial, talk and plenary update - bit.ly/napari-scipy26
First, @timmonko.bsky.social, @aganders3.bsky.social and @willingc.bsky.social took on Minneapolis for SciPy 2026 with a tutorial, talk and plenary update - bit.ly/napari-scipy26
August 12, 2026 at 2:33 AM
July was a whirlwind 🌪️ Join us for a Sizzling Summer Series of posts highlighting the community's amazing work💪
First, @timmonko.bsky.social, @aganders3.bsky.social and @willingc.bsky.social took on Minneapolis for SciPy 2026 with a tutorial, talk and plenary update - bit.ly/napari-scipy26
First, @timmonko.bsky.social, @aganders3.bsky.social and @willingc.bsky.social took on Minneapolis for SciPy 2026 with a tutorial, talk and plenary update - bit.ly/napari-scipy26
And it's a wrap! The hackathon was a fantastic success! 🥳 You can look forward to a longer post about all we did, and one of our biggest releases yet in 0.9.0! Huge thanks to all the participants 🤩, and we hope to see you at the next one!
July 31, 2026 at 6:44 PM
And it's a wrap! The hackathon was a fantastic success! 🥳 You can look forward to a longer post about all we did, and one of our biggest releases yet in 0.9.0! Huge thanks to all the participants 🤩, and we hope to see you at the next one!
Reposted by napari
Not going to be in Cracow for the big event so had to make do with a small impromptu @napari.org x @openmicroscopy.org #omezarr Hackathon in Bern 🔬🇨🇭 @m-albert.bsky.social @guiwitz.bsky.social
July 23, 2026 at 7:30 PM
Not going to be in Cracow for the big event so had to make do with a small impromptu @napari.org x @openmicroscopy.org #omezarr Hackathon in Bern 🔬🇨🇭 @m-albert.bsky.social @guiwitz.bsky.social
Reposted by napari
napari is such an incredible piece of scientific software! 🚀
And it's not just for visualizing static data. I've been using it for the past 6 months to drive a @verasonicsinc.bsky.social ultrasound system for #fUSI, and get a nice GUI for sequence control and live visualization! 🤩
And it's not just for visualizing static data. I've been using it for the past 6 months to drive a @verasonicsinc.bsky.social ultrasound system for #fUSI, and get a nice GUI for sequence control and live visualization! 🤩
July 17, 2026 at 7:53 AM
napari is such an incredible piece of scientific software! 🚀
And it's not just for visualizing static data. I've been using it for the past 6 months to drive a @verasonicsinc.bsky.social ultrasound system for #fUSI, and get a nice GUI for sequence control and live visualization! 🤩
And it's not just for visualizing static data. I've been using it for the past 6 months to drive a @verasonicsinc.bsky.social ultrasound system for #fUSI, and get a nice GUI for sequence control and live visualization! 🤩
Reposted by napari
📣 One of the best parts of #SciPy2026 is seeing the Scientific Python ecosystem evolve in real time.
Today's Tools Plenary featured updates from the teams behind Zarr, Xarray, Tiled, Pangeo, scikit-image, Matplotlib, and napari, showcasing new features & future directions 🫶
Today's Tools Plenary featured updates from the teams behind Zarr, Xarray, Tiled, Pangeo, scikit-image, Matplotlib, and napari, showcasing new features & future directions 🫶
July 16, 2026 at 3:56 PM
📣 One of the best parts of #SciPy2026 is seeing the Scientific Python ecosystem evolve in real time.
Today's Tools Plenary featured updates from the teams behind Zarr, Xarray, Tiled, Pangeo, scikit-image, Matplotlib, and napari, showcasing new features & future directions 🫶
Today's Tools Plenary featured updates from the teams behind Zarr, Xarray, Tiled, Pangeo, scikit-image, Matplotlib, and napari, showcasing new features & future directions 🫶
July 16, 2026 at 11:59 AM
Struggling for something to do in a TWO DAY gap without ⚽? How about trying our pre-release of napari 0.8.0?
napari.org/dev/release/...
Of note, this release drops Py3.10 support and deprecates PyQt5 in favor of PyQt6. It also adds some neat new features and improvements! See below: 👇
napari.org/dev/release/...
Of note, this release drops Py3.10 support and deprecates PyQt5 in favor of PyQt6. It also adds some neat new features and improvements! See below: 👇
July 12, 2026 at 8:57 PM
Struggling for something to do in a TWO DAY gap without ⚽? How about trying our pre-release of napari 0.8.0?
napari.org/dev/release/...
Of note, this release drops Py3.10 support and deprecates PyQt5 in favor of PyQt6. It also adds some neat new features and improvements! See below: 👇
napari.org/dev/release/...
Of note, this release drops Py3.10 support and deprecates PyQt5 in favor of PyQt6. It also adds some neat new features and improvements! See below: 👇
Reposted by napari
Still, what's new? My personal favorite: The scene 🎥 Thanks to a now standardized set of transformations, you can write out the spatial relationships between (multi-modal) images, which is super neat in image registration...
(Dataset: rodare.hzdr.de/record/3131)
(Dataset: rodare.hzdr.de/record/3131)
July 3, 2026 at 1:13 PM
Still, what's new? My personal favorite: The scene 🎥 Thanks to a now standardized set of transformations, you can write out the spatial relationships between (multi-modal) images, which is super neat in image registration...
(Dataset: rodare.hzdr.de/record/3131)
(Dataset: rodare.hzdr.de/record/3131)
Reposted by napari
Working with OME-Zarrs in @napari.org ? Check out the newest release of napari-ome-zarr-navigator to make your life easier & allow more interactive ways to write back to OME-Zarrs.
Follow the thread for more
(1/5 🧵)
Follow the thread for more
(1/5 🧵)
June 30, 2026 at 12:31 PM
Working with OME-Zarrs in @napari.org ? Check out the newest release of napari-ome-zarr-navigator to make your life easier & allow more interactive ways to write back to OME-Zarrs.
Follow the thread for more
(1/5 🧵)
Follow the thread for more
(1/5 🧵)
Hack with over a dozen awesome folks in Poland! Just a month away! 🥳
🎉 Announcing the naPLari hackathon in Kraków, Poland 🇵🇱, July 24–29 2026, after EuroSciPy!
Hack on napari, join deep dives, meet the team. All experience levels welcome!
📝 Register by July 1: napari.typeform.com/naplari-hack
#napari #ScientificPython #OpenSource #EuroSciPy #BioImageAnalysis
Hack on napari, join deep dives, meet the team. All experience levels welcome!
📝 Register by July 1: napari.typeform.com/naplari-hack
#napari #ScientificPython #OpenSource #EuroSciPy #BioImageAnalysis
naPLari Hackathon
Questionnaire for the napari hackathon in Krakow, Poland, July 24-29th, 2026.
napari.typeform.com
June 26, 2026 at 3:25 AM
Hack with over a dozen awesome folks in Poland! Just a month away! 🥳
Reposted by napari
Just the occasional this-thing-is-really-easy-in-ome-zarr-0.6 kind of post: Stitching in napari @napari.org with napari-stitcher (@m-albert.bsky.social) and napari-ome-zarr (@will-j-moore.bsky.social) (WIP) :
(Sample data from the awesome big-stitcher tool github.com/JaneliaSciCo...)
(Sample data from the awesome big-stitcher tool github.com/JaneliaSciCo...)
June 25, 2026 at 8:18 PM
Just the occasional this-thing-is-really-easy-in-ome-zarr-0.6 kind of post: Stitching in napari @napari.org with napari-stitcher (@m-albert.bsky.social) and napari-ome-zarr (@will-j-moore.bsky.social) (WIP) :
(Sample data from the awesome big-stitcher tool github.com/JaneliaSciCo...)
(Sample data from the awesome big-stitcher tool github.com/JaneliaSciCo...)
napari 0.7.1 is now available!! 🚀 🎉
Read the full release notes here: napari.org/stable/relea...
Highlights: the scale bar inherits units from layers, colorbars for points layers, locking layers, and a signed Windows bundle!
We thank especially our 9 new brilliant contributors 🤩
Read the full release notes here: napari.org/stable/relea...
Highlights: the scale bar inherits units from layers, colorbars for points layers, locking layers, and a signed Windows bundle!
We thank especially our 9 new brilliant contributors 🤩
June 17, 2026 at 9:35 PM
napari 0.7.1 is now available!! 🚀 🎉
Read the full release notes here: napari.org/stable/relea...
Highlights: the scale bar inherits units from layers, colorbars for points layers, locking layers, and a signed Windows bundle!
We thank especially our 9 new brilliant contributors 🤩
Read the full release notes here: napari.org/stable/relea...
Highlights: the scale bar inherits units from layers, colorbars for points layers, locking layers, and a signed Windows bundle!
We thank especially our 9 new brilliant contributors 🤩
Reposted by napari
🔬 Tutorial Spotlight: Build custom image analysis tools without starting from scratch. Tim shows you napari's power for microscopy, satellite data, and everything between 🛰️ Extend, visualize, annotate like a pro! #SciPy2026 🔗 scipy2026.scipy.org
June 3, 2026 at 4:05 PM
🔬 Tutorial Spotlight: Build custom image analysis tools without starting from scratch. Tim shows you napari's power for microscopy, satellite data, and everything between 🛰️ Extend, visualize, annotate like a pro! #SciPy2026 🔗 scipy2026.scipy.org
Join our hackathon in Kraków! It's going to be an absolutely great time! At least 8 awesome folks will be there! Fill out the typeform below so we can be in touch. 😍
🎉 Announcing the naPLari hackathon in Kraków, Poland 🇵🇱, July 24–29 2026, after EuroSciPy!
Hack on napari, join deep dives, meet the team. All experience levels welcome!
📝 Register by July 1: napari.typeform.com/naplari-hack
#napari #ScientificPython #OpenSource #EuroSciPy #BioImageAnalysis
Hack on napari, join deep dives, meet the team. All experience levels welcome!
📝 Register by July 1: napari.typeform.com/naplari-hack
#napari #ScientificPython #OpenSource #EuroSciPy #BioImageAnalysis
naPLari Hackathon
Questionnaire for the napari hackathon in Krakow, Poland, July 24-29th, 2026.
napari.typeform.com
June 12, 2026 at 4:50 AM
Join our hackathon in Kraków! It's going to be an absolutely great time! At least 8 awesome folks will be there! Fill out the typeform below so we can be in touch. 😍
Reposted by napari
Drawing regions of interest has been among our most-requested features, and a long time in the making.
Building it on top of @napari.org was fun. Drawing and editing shapes is such a joy!
Building it on top of @napari.org was fun. Drawing and editing shapes is such a joy!
Movement v0.16.0 released!
This version now comes with the ability to draw, save, and load Regions of Interest in the GUI, and load_dataset can now automatically detect the source software.
See the release notes for more info and a full list of changes: github.com/neuroinforma...
This version now comes with the ability to draw, save, and load Regions of Interest in the GUI, and load_dataset can now automatically detect the source software.
See the release notes for more info and a full list of changes: github.com/neuroinforma...
April 23, 2026 at 10:37 AM
Drawing regions of interest has been among our most-requested features, and a long time in the making.
Building it on top of @napari.org was fun. Drawing and editing shapes is such a joy!
Building it on top of @napari.org was fun. Drawing and editing shapes is such a joy!
Reposted by napari
🎉 Announcing the naPLari hackathon in Kraków, Poland 🇵🇱, July 24–29 2026, after EuroSciPy!
Hack on napari, join deep dives, meet the team. All experience levels welcome!
📝 Register by July 1: napari.typeform.com/naplari-hack
#napari #ScientificPython #OpenSource #EuroSciPy #BioImageAnalysis
Hack on napari, join deep dives, meet the team. All experience levels welcome!
📝 Register by July 1: napari.typeform.com/naplari-hack
#napari #ScientificPython #OpenSource #EuroSciPy #BioImageAnalysis
naPLari Hackathon
Questionnaire for the napari hackathon in Krakow, Poland, July 24-29th, 2026.
napari.typeform.com
May 22, 2026 at 5:10 AM
🎉 Announcing the naPLari hackathon in Kraków, Poland 🇵🇱, July 24–29 2026, after EuroSciPy!
Hack on napari, join deep dives, meet the team. All experience levels welcome!
📝 Register by July 1: napari.typeform.com/naplari-hack
#napari #ScientificPython #OpenSource #EuroSciPy #BioImageAnalysis
Hack on napari, join deep dives, meet the team. All experience levels welcome!
📝 Register by July 1: napari.typeform.com/naplari-hack
#napari #ScientificPython #OpenSource #EuroSciPy #BioImageAnalysis
🎉 Announcing the naPLari hackathon in Kraków, Poland 🇵🇱, July 24–29 2026, after EuroSciPy!
Hack on napari, join deep dives, meet the team. All experience levels welcome!
📝 Register by July 1: napari.typeform.com/naplari-hack
#napari #ScientificPython #OpenSource #EuroSciPy #BioImageAnalysis
Hack on napari, join deep dives, meet the team. All experience levels welcome!
📝 Register by July 1: napari.typeform.com/naplari-hack
#napari #ScientificPython #OpenSource #EuroSciPy #BioImageAnalysis
naPLari Hackathon
Questionnaire for the napari hackathon in Krakow, Poland, July 24-29th, 2026.
napari.typeform.com
May 22, 2026 at 5:10 AM
🎉 Announcing the naPLari hackathon in Kraków, Poland 🇵🇱, July 24–29 2026, after EuroSciPy!
Hack on napari, join deep dives, meet the team. All experience levels welcome!
📝 Register by July 1: napari.typeform.com/naplari-hack
#napari #ScientificPython #OpenSource #EuroSciPy #BioImageAnalysis
Hack on napari, join deep dives, meet the team. All experience levels welcome!
📝 Register by July 1: napari.typeform.com/naplari-hack
#napari #ScientificPython #OpenSource #EuroSciPy #BioImageAnalysis