#Felsenstein
Article in Panda's Thumb by Joe Felsenstein, commenting on a weird claim by Eric Hedin, in which he "imagine[s] that" evolution cannot occur, so life must be an Idea in the mind of God. pandasthumb.org/archives/202...
Is evolution defied because life is an
pandasthumb.org
September 6, 2026 at 5:28 PM
@jeriellsworth.bsky.social, look what company you keep in the mind of Claude! 💙 (I was playing around, asking it for modern larger than life personalities in this business the likes of Ted Nelson, Lee Felsenstein, Stewart Brand before he went nuts)…
August 26, 2026 at 8:22 PM
For OU eyes only
From the Felsenstein Zone With Love
August 21, 2026 at 4:10 AM
The Felsenstein pruning algorithm (1973) is the backbone of phylogenetic inference, but what actually is the transition operator along a phylogeny?

@colinhl.bsky.social answers this question in this #GENETICS paper 🔗 buff.ly/zCoIgBL
August 20, 2026 at 8:01 PM
Felsenstein goes on to mention that the accepted wisdom of the Old Left was to heighten the contradictions of capitalism to force it to collapse, by doing, among other things, work to bring about further automation to replace human workers and make the whole system precarious
August 9, 2026 at 12:09 AM
Felsenstein saw it, probably at school, in Philadelphia, and he was instantly sold on SF as being this cool rad place lol

anyway check it out: Operation Abolition is on the Internet Archive @archive.org

archive.org/details/2048...
Operation Abolition
A report on the resistance to hearings of the Committee on Un-American Activities in San Francisco. Created using subpoenaed news footage, the strongly authoritarian narrative perspective shows police...
archive.org
August 8, 2026 at 11:56 PM
Felsenstein says that the House Un-American Activities Committee tried to hold a meeting in SF, and were strongly protested, and so they (HUAC) cut together footage of the protests to show what a wild radical out of control place SF is, called Operation Abolition
August 8, 2026 at 11:54 PM
Before my time, but reading stuff from the era and recounts (e.g., Felsenstein) are cray-zee.

As a baby grad student, I _did_ encounter Farris at a Hennig meeting. Even then he had his sycophants, which was, ftankly embarrassing. I thiught he gave off crazy-grandpa energy...
August 6, 2026 at 6:31 PM
The Felsenstein pruning algorithm (1973) is the backbone of phylogenetic inference, but what actually is the transition operator along a phylogeny?

Read the latest article in the August issue of #GENETICS, where @colinhl.bsky.social answers this question.

🔗 buff.ly/aVGvAfu
August 5, 2026 at 8:00 PM
Joe Felsenstein shows how Lamarck, the first evolutionary biologist, is misrepresented and misunderstood by creationists, in this post in The Panda's Thumb on Lamarck's 282nd birthday.

pandasthumb.org/archives/202...
An unhappy birthday: Lamarck is misrepresented
pandasthumb.org
August 2, 2026 at 10:04 PM
My dad had one of these (an Osborne One) because it was invented by his high school friend Lee Felsenstein. He used it into the 1990s. He did a lot of writing in WordStar.
August 1, 2026 at 2:35 PM
Feed: "The Panda’s Thumb"
By: Joe Felsenstein on Monday, July 20, 2026
Can natural selection make organized complexity?
The cliff known to the Lakota people as Six Grandfathers, now known as Mount Rushmore. From Wikimedia, public domain. (We've been using this for all posts concerning reviews of the 2nd edition of The Design Inference. That book has a more recent photo of Mount Rushmore on its cover.)   A previous PT post here discussed philosopher of science Joseph K. Cosgrove’s review of William Dembski and Winston Ewert’s 2nd edition of The Design Inference. I had some qualms and questions about Cosgrove’s conclusions. I hoped he would comment in the discussion. He was kind enough to contribute a substantial argument in the conmments section of that post. This included responses to my and John Harshman’s comments on his argument. (For more links to the earlier posts on reviews of Dembski and Ewert’s book, and to Cosgrove’s review, see the link I just gave.) In response to John Harshman’s comment Cosgrove commented: On John H’s remark about my “trichotomy” of chance, necessity, and design: To our knowledge, blind processes in nature produce two kinds of outcomes: Chance produces random outcomes and necessity produces ordered outcomes. Both chance and necessity are involved in both types, but the outcomes still can be categorized in terms of one or the other. A roll of the dice, for instance, follows the laws of physics and so conforms to necessity, but it produces a chance outcome governed by a probability distribution. By contrast, the atoms of a chemical crystal have to line up in a deterministic pattern dictated by the equilibrium of forces. That is a necessary outcome although it also involves chance (which particular atoms end up where, for instance). Neither of these two types is organized (a sequence of coin tosses is complex but not organized; a chemical crystal is ordered, not organized). So my trichotomy is really chance, necessity, and organized complexity. If there is a fourth category in addition to chance, necessity, and organization I’m not aware of what it is. To our knowledge, no mere combination of chance and necessity can produce organized complexity. John Harshman then said: Then one must ask what natural selection consists of and whether it is so capable. I think this exchange is particularly important in evaluating Cosgrove’s argument, so I have put up this post, in hopes that Cosgrove, Harshman, and our other commenters can address this issue. To see the comments, click on the title of this post or on the number of comments.
pandasthumb.org
July 21, 2026 at 1:00 AM
Which "Felsenstein (1985)" though? Friend asking.
July 10, 2026 at 7:32 PM
You might call it... the "Felsenstein Zone"?
July 10, 2026 at 7:30 PM
Overall it was a cranky review but I don't THINK it got to Felsenstein levels of cranky
July 10, 2026 at 7:19 PM
I have officially become the guy who cites Felsenstein (1985) at people in peer reviews but in my defense, I was provoked
July 10, 2026 at 7:12 PM
Making them sit together until they are friends.
July 10, 2026 at 5:24 PM
(recht ahle Students)
Hoffmann's Erzählungen - Klein-Zack
Hanns Nocker is Hoffmann. From a filmed version, 1970. (The Tales of Hoffmann by J. Offenbach). Director Walter Felsenstein.
www.youtube.com/watch?v=D0K6...
Hoffmann's Erzählungen - Klein-Zack
YouTube video by WagneroperaNET
www.youtube.com
July 6, 2026 at 2:38 PM
Feed: "The Panda’s Thumb"
By: Joe Felsenstein on Saturday, July 4, 2026
David Coppedge makes it clear a refresher course is needed
Like Coppedge's post, this one shows an image of a Tuatara. It is by Michael Hamiltonand is from Wikimedia and is under Creative Commons Attribution-Share Alike 3.0 license. I think that this one is better.   A frequent contributor of posts at the Discovery Institute’s site “Science and Culture Today”, David Coppedge, has sternly lectured us evolutionary biologists: we “need a refresher course in natural selection”. He is really trying to straighten us out, wagging finger and all. I agree that someone needs a refresher, but in this case think it’s David Coppedge. Did he ever get “freshed” in the first case? Let’s look at the points he made, and see whether any of them are misconceptions, particularly ones we have exposed here as misconceptions, long before Coppege’s call for a refresher course. Coppedge sets out his task thusly: Abuses of the concept of natural selection abound not only in science news articles but in research papers in major scientific journals as well. It’s time for a remedial course. At best, natural selection allows the fortunate to continue existing. I say fortunate, because a mindless process could not care what exists or not, and there is no guarantee that survivors will represent an improvement over what existed before; the survivors might be lucky bums. At worst, natural selection (hereafter NS) commits the fallacy of personification, ascribing the power of choice to impersonal happenstance. This makes as much sense as speaking of “natural voting.” NS doesn’t care who wins. NS is not a person. Extinction is just as valid an outcome of “selection” as innovating a new organ, eye, or wing. Other blatant cases of personification can be found in descriptions of NS as a “blind watchmaker” or a “tinkerer” or a “driver” and in Dawkins’ concept of “selfish genes.” Before continuing, clear your mind of any idea of foresight, plan, or purpose as we consider what natural selection means and does not mean. Notice I do not call NS a process. The word “process” carries with it the baggage of programming or an algorithm. NS has neither. Oy! “impersonal happenstance” does not tend to result in organisms with greater fitness? The particular happenstances that we talk about when we call them natural selection certainly do. Fitness is a combination of viability and fertility. And when an indvidual has higher fitness, it survives better and/or has greater fertility. Its descendants are better-represented in the next generation. By definition. No personification needed. It is just a matter of bookkeeping. And that bookkeeping results in changes in the genetic composition of the population. Wasn’t Coppedge taught this in his high school (secondary school) biology class? Or in college? He has a B.S. degree in science education. Maybe he missed a few lectures. The university where he studied was Bob Jones University. Maybe there was no good lecture on natural selection.
pandasthumb.org
July 6, 2026 at 10:31 AM
Latest article on Panda's Thumb: "David Coppege makes it clear a refresher course is needed," by Joe Felsenstein. Coppege thinks he debunks natural selection. Yes, really.
pandasthumb.org/archives/202... CC BY-SA 3.0.
July 5, 2026 at 9:43 PM
Dreiklang der Essence · Band 1

WURZELTANZ

dein körper
wie ein vulkan
und felsenstein

weisheit
die sich weitet
leuchtturm
wo

berührung
alle
wurzeln
entlarvt

und
säfte
befreit

im ewigen
TANZ
Joanna Falconer

Verfeinere deine Art, die Welt zu sehen.
Essence in Creation®
www.essenceincreation.de
July 3, 2026 at 9:39 PM
I’ve been ranting for 30 years colleges should include computing history in their curriculum. Ted Nelson’s work. Lee Felsenstein. Test Driven Development is older than you think. Wozniak did not invent the personal computer. Dijkstra was a brilliant jerk. The von Neumann architecture is misnamed.
June 28, 2026 at 4:57 AM
To end a fantastic day of talks, we have our Mendel Medal winner, Joe Felsenstein, joining us online to talk about comparative methods within species: connecting evolutionary time scales?
June 25, 2026 at 3:59 PM
I had never heard of the Vixen.

I worked on a refurbished Osborne 1 in college.

I saw, but did not use, that wood-sided early PC that Felsenstein designed. Stored in a cabinet, along with an Altair, in the SUNY Stony Brook computer science lab.

I hope they were preserved!
June 19, 2026 at 9:08 PM