Great to see "TRIPOD+AI and DECIDE-AI are the highest quality guidelines with respect to rigor of development and the involvement of the stakeholders" 😄 in
academic.oup.com/jamiaopen/ar...
Get TRIPOD+AI from www.bmj.com/content/385/...
#MLSky #StatsSky #MedSky
academic.oup.com/jamiaopen/ar...
Get TRIPOD+AI from www.bmj.com/content/385/...
#MLSky #StatsSky #MedSky
January 8, 2025 at 2:37 PM
Great to see "TRIPOD+AI and DECIDE-AI are the highest quality guidelines with respect to rigor of development and the involvement of the stakeholders" 😄 in
academic.oup.com/jamiaopen/ar...
Get TRIPOD+AI from www.bmj.com/content/385/...
#MLSky #StatsSky #MedSky
academic.oup.com/jamiaopen/ar...
Get TRIPOD+AI from www.bmj.com/content/385/...
#MLSky #StatsSky #MedSky
medicalcoder: a unified and longitudinally aware framework for International Classification of Diseases code-based comorbidity assessment in R academic.oup.com/jamiaopen/ar...
medicalcoder: a unified and longitudinally aware framework for International Classification of Diseases code-based comorbidity assessment in R
AbstractObjectives. Comorbidity algorithms derived from International Classification of Diseases (ICD) codes are central to risk adjustment and cohort char
academic.oup.com
September 26, 2026 at 2:37 PM
medicalcoder: a unified and longitudinally aware framework for International Classification of Diseases code-based comorbidity assessment in R academic.oup.com/jamiaopen/ar...
Thrilled to share our new paper comparing different LLMs to extract TNFi reasons and treatment trajectories from UCSF de-identified EHR data with @bmeow19.bsky.social, A. Garcia-Agundez and @jyazdanymd.bsky.social published in JAMIA open.
academic.oup.com/jamiaopen/ar...
@ucsf-bchsi.bsky.social
academic.oup.com/jamiaopen/ar...
@ucsf-bchsi.bsky.social
November 14, 2025 at 9:36 PM
Thrilled to share our new paper comparing different LLMs to extract TNFi reasons and treatment trajectories from UCSF de-identified EHR data with @bmeow19.bsky.social, A. Garcia-Agundez and @jyazdanymd.bsky.social published in JAMIA open.
academic.oup.com/jamiaopen/ar...
@ucsf-bchsi.bsky.social
academic.oup.com/jamiaopen/ar...
@ucsf-bchsi.bsky.social
In #JAMIA Open from @academic.oup.com | Biomedical data repositories require governance for artificial intelligence/machine learning applications at every step | #Data #Database #OpenScience #AI #ML 🧬 🖥️ 🧪 🔓
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academic.oup.com/jamiaopen/ar...
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academic.oup.com/jamiaopen/ar...
Validate User
academic.oup.com
December 11, 2025 at 2:47 AM
In #JAMIA Open from @academic.oup.com | Biomedical data repositories require governance for artificial intelligence/machine learning applications at every step | #Data #Database #OpenScience #AI #ML 🧬 🖥️ 🧪 🔓
⬇️
academic.oup.com/jamiaopen/ar...
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academic.oup.com/jamiaopen/ar...
Hits close to home as a complex patient who's been in the UCSD system and a social scientist helping a lot of patients use AI. I see a lot of typical physician blinders in this tbh.
academic.oup.com/jamiaopen/ar...
academic.oup.com/jamiaopen/ar...
Early experience with a patient-facing AI chatbot integrated in a patient portal
AbstractBackground and significance. Many patients struggle to interpret lab and test results.Objective. To evaluate patient experience, usability, and int
academic.oup.com
July 30, 2026 at 6:41 PM
Hits close to home as a complex patient who's been in the UCSD system and a social scientist helping a lot of patients use AI. I see a lot of typical physician blinders in this tbh.
academic.oup.com/jamiaopen/ar...
academic.oup.com/jamiaopen/ar...
NIH researchers studied 2,246,913 older adults with COVID-19.
Early nirmatrelvir and molnupiravir were associated with 12% and 8% lower long COVID hazard when models accounted for changing treatment and health status over time.
academic.oup.com/jamiaopen/ar...
Early nirmatrelvir and molnupiravir were associated with 12% and 8% lower long COVID hazard when models accounted for changing treatment and health status over time.
academic.oup.com/jamiaopen/ar...
Deep learning survival analysis with time-varying covariates: extending PyCox to assess COVID-19 antiviral treatments and long-COVID associations
AbstractObjectives. To extend the PyCox to accommodate time-varying covariates using counting process data, addressing immortal time bias in survival analy
academic.oup.com
September 19, 2026 at 2:05 PM
NIH researchers studied 2,246,913 older adults with COVID-19.
Early nirmatrelvir and molnupiravir were associated with 12% and 8% lower long COVID hazard when models accounted for changing treatment and health status over time.
academic.oup.com/jamiaopen/ar...
Early nirmatrelvir and molnupiravir were associated with 12% and 8% lower long COVID hazard when models accounted for changing treatment and health status over time.
academic.oup.com/jamiaopen/ar...
Love reading #informatics papers that have a #ResearchSoftwareEngineering focus! Kudos to Post et al for describing their architecture and approaches with TDD. academic.oup.com/jamiaopen/ar...
January 2, 2024 at 2:35 PM
Love reading #informatics papers that have a #ResearchSoftwareEngineering focus! Kudos to Post et al for describing their architecture and approaches with TDD. academic.oup.com/jamiaopen/ar...
Despite recommendations & requirements to collect sexual orientation & gender identity #SOGI data in electronic health records #EHR there is WILD variability across health care systems and EHR platforms. This will be critical in the coming years...
academic.oup.com/jamiaopen/ar...
academic.oup.com/jamiaopen/ar...
Sex, sexual orientation, and gender identity data collection across electronic health record platforms: a national cross-sectional survey
AbstractObjectives. To assess the current state of sex, sexual orientation, and gender identity (SSOGI) data collection options in US electronic health rec
academic.oup.com
November 23, 2024 at 3:04 AM
Despite recommendations & requirements to collect sexual orientation & gender identity #SOGI data in electronic health records #EHR there is WILD variability across health care systems and EHR platforms. This will be critical in the coming years...
academic.oup.com/jamiaopen/ar...
academic.oup.com/jamiaopen/ar...
Our new article, which pushes LLM-assisted qualitative research forward, is out! This use case includes social media data relevant to substance use disorders. Check it out: academic.oup.com/jamiaopen/ar...
Validate User
academic.oup.com
September 22, 2025 at 5:24 PM
Our new article, which pushes LLM-assisted qualitative research forward, is out! This use case includes social media data relevant to substance use disorders. Check it out: academic.oup.com/jamiaopen/ar...
Grateful to get regular invites from JAMIA to review and to be able to contribute to science in this way!
#JAMIAOpen #JAMIA
#JAMIAOpen #JAMIA
January 16, 2026 at 12:56 PM
Grateful to get regular invites from JAMIA to review and to be able to contribute to science in this way!
#JAMIAOpen #JAMIA
#JAMIAOpen #JAMIA
Check out our new paper #umassmemorial #criticalcare #HIMSS2025 #umasschan #Epic
academic.oup.com/jamiaopen/ar...
academic.oup.com/jamiaopen/ar...
A dynamic customized electronic health record rule based clinical decision support tool for standardized adult intensive care metrics
AbstractObjectives. Many routine patient care items should be reviewed at least daily for intensive care unit (ICU) patients. These items are often incompl
academic.oup.com
December 21, 2024 at 3:52 PM
Check out our new paper #umassmemorial #criticalcare #HIMSS2025 #umasschan #Epic
academic.oup.com/jamiaopen/ar...
academic.oup.com/jamiaopen/ar...
How are patients using AI to improve their health outcomes?
@cait-desroches.bsky.social @danamlewis.bsky.social and @chethan.bsky.social presented new research at the SAIL conference on integrating AI into the clinic.
Read more: academic.oup.com/jamiaopen/ar...
#cansky #medsky #patientsuseAI
@cait-desroches.bsky.social @danamlewis.bsky.social and @chethan.bsky.social presented new research at the SAIL conference on integrating AI into the clinic.
Read more: academic.oup.com/jamiaopen/ar...
#cansky #medsky #patientsuseAI
May 12, 2025 at 4:38 PM
How are patients using AI to improve their health outcomes?
@cait-desroches.bsky.social @danamlewis.bsky.social and @chethan.bsky.social presented new research at the SAIL conference on integrating AI into the clinic.
Read more: academic.oup.com/jamiaopen/ar...
#cansky #medsky #patientsuseAI
@cait-desroches.bsky.social @danamlewis.bsky.social and @chethan.bsky.social presented new research at the SAIL conference on integrating AI into the clinic.
Read more: academic.oup.com/jamiaopen/ar...
#cansky #medsky #patientsuseAI
🚨 New OpenNotes Research Alert!
Can #GenerativeAI help patients make sense of their #opennotes?
🤖 AI isn’t a replacement for clinical guidance—but it may be a useful bridge during the “in-between” moments of care.
Open access paper 👉
academic.oup.com/jamiaopen/ar...
@thelizarmy.bsky.social
Can #GenerativeAI help patients make sense of their #opennotes?
🤖 AI isn’t a replacement for clinical guidance—but it may be a useful bridge during the “in-between” moments of care.
Open access paper 👉
academic.oup.com/jamiaopen/ar...
@thelizarmy.bsky.social
April 23, 2025 at 6:16 PM
🚨 New OpenNotes Research Alert!
Can #GenerativeAI help patients make sense of their #opennotes?
🤖 AI isn’t a replacement for clinical guidance—but it may be a useful bridge during the “in-between” moments of care.
Open access paper 👉
academic.oup.com/jamiaopen/ar...
@thelizarmy.bsky.social
Can #GenerativeAI help patients make sense of their #opennotes?
🤖 AI isn’t a replacement for clinical guidance—but it may be a useful bridge during the “in-between” moments of care.
Open access paper 👉
academic.oup.com/jamiaopen/ar...
@thelizarmy.bsky.social
New JAMIAOpen paper on software for disease forecasting. Co-developed by the U of OK, S Nazarene U, and State Health Depts from SD, LA, MI, and OK. The ArboMAP system predicts West Nile virus based on ecological relationships using weather and mosquito data. #Episky academic.oup.com/jamiaopen/ar...
January 5, 2024 at 2:23 PM
New JAMIAOpen paper on software for disease forecasting. Co-developed by the U of OK, S Nazarene U, and State Health Depts from SD, LA, MI, and OK. The ArboMAP system predicts West Nile virus based on ecological relationships using weather and mosquito data. #Episky academic.oup.com/jamiaopen/ar...
Check out this great new paper from Camille Nebeker and the Ethics Working Group from Bridge2AI, (& Native Bio was a part of it!) academic.oup.com/jamiaopen/ar...
Ethical sourcing in the context of health data supply chain management: a value sensitive design approach
AbstractObjective. The Bridge2AI program is establishing rules of practice for creating ethically sourced health data repositories to support the effective
academic.oup.com
October 21, 2025 at 8:11 PM
Check out this great new paper from Camille Nebeker and the Ethics Working Group from Bridge2AI, (& Native Bio was a part of it!) academic.oup.com/jamiaopen/ar...
🚨 NEW PUBLICATION ALERT!
ISL-supported research explores if giving patients direct access to lab results via portals truly boosts engagement & understanding.
Published in Open Access: Oxford Academic.
academic.oup.com/jamiaopen/ar...
#FSUResearch #DigitalHealth #ISL
ISL-supported research explores if giving patients direct access to lab results via portals truly boosts engagement & understanding.
Published in Open Access: Oxford Academic.
academic.oup.com/jamiaopen/ar...
#FSUResearch #DigitalHealth #ISL
April 2, 2025 at 6:26 PM
🚨 NEW PUBLICATION ALERT!
ISL-supported research explores if giving patients direct access to lab results via portals truly boosts engagement & understanding.
Published in Open Access: Oxford Academic.
academic.oup.com/jamiaopen/ar...
#FSUResearch #DigitalHealth #ISL
ISL-supported research explores if giving patients direct access to lab results via portals truly boosts engagement & understanding.
Published in Open Access: Oxford Academic.
academic.oup.com/jamiaopen/ar...
#FSUResearch #DigitalHealth #ISL
Across 8 different types of EHR systems used in 41 health care systems, less than two-thirds collected SSOGI information about their patients in a standard manner academic.oup.com/jamiaopen/ar...
Sex, sexual orientation, and gender identity data collection across electronic health record platforms: a national cross-sectional survey
AbstractObjectives. To assess the current state of sex, sexual orientation, and gender identity (SSOGI) data collection options in US electronic health rec
academic.oup.com
November 19, 2024 at 3:57 AM
Across 8 different types of EHR systems used in 41 health care systems, less than two-thirds collected SSOGI information about their patients in a standard manner academic.oup.com/jamiaopen/ar...
Twelve US children’s hospitals studied 10,618 patients and 48,287 clinical notes.
Nearly all 25 tracked symptoms were more common in kids with long COVID, with pain and digestive issues most frequent.
NLP revealed what billing codes missed.
academic.oup.com/jamiaopen/ar...
Nearly all 25 tracked symptoms were more common in kids with long COVID, with pain and digestive issues most frequent.
NLP revealed what billing codes missed.
academic.oup.com/jamiaopen/ar...
A natural language processing pipeline for identifying pediatric long COVID symptoms and functional impacts in freeform clinical notes: a RECOVER study
AbstractObjective. To develop a natural language processing (NLP) pipeline for unstructured electronic health record (EHR) data to identify symptoms and fu
academic.oup.com
September 8, 2025 at 8:11 PM
Twelve US children’s hospitals studied 10,618 patients and 48,287 clinical notes.
Nearly all 25 tracked symptoms were more common in kids with long COVID, with pain and digestive issues most frequent.
NLP revealed what billing codes missed.
academic.oup.com/jamiaopen/ar...
Nearly all 25 tracked symptoms were more common in kids with long COVID, with pain and digestive issues most frequent.
NLP revealed what billing codes missed.
academic.oup.com/jamiaopen/ar...
Biomedical data repositories require governance for artificial intelligence/machine learning applications at every step - By Ellen Wright Clayton, Susannah Rose, Camille Nebecker et al., including Kadija Ferryman - for the Bridge2AI Ethics Working Group | JAMIA Open academic.oup.com/jamiaopen/ar...
Validate User
academic.oup.com
December 3, 2025 at 2:38 PM
Biomedical data repositories require governance for artificial intelligence/machine learning applications at every step - By Ellen Wright Clayton, Susannah Rose, Camille Nebecker et al., including Kadija Ferryman - for the Bridge2AI Ethics Working Group | JAMIA Open academic.oup.com/jamiaopen/ar...
Adam(2024) is the latest attempt to fine-tune a LLM with data from PROSPERO. It does much better for recall but still not reliable as humans for all topics and has much lower precision (high NNR). (7) academic.oup.com/jamiaopen/ar...
February 25, 2025 at 2:47 PM
Adam(2024) is the latest attempt to fine-tune a LLM with data from PROSPERO. It does much better for recall but still not reliable as humans for all topics and has much lower precision (high NNR). (7) academic.oup.com/jamiaopen/ar...
Navigating the new NIH Data Management Sharing plan: the NIH HEAL Initiative Data2Action DMPTool template | JAMIA Open | Oxford Academic https://academic.oup.com/jamiaopen/article/8/3/ooaf040/8139863
Navigating the new NIH Data Management Sharing plan: the NIH HEAL Initiative Data2Action DMPTool template
AbstractObjectives. This work aims to provide a specialized template for integrating diverse study data types with varying sharing restrictions specific to
academic.oup.com
May 25, 2025 at 8:35 PM
Navigating the new NIH Data Management Sharing plan: the NIH HEAL Initiative Data2Action DMPTool template | JAMIA Open | Oxford Academic https://academic.oup.com/jamiaopen/article/8/3/ooaf040/8139863
Just released in JAMIA Open! Privacy-preserving verification of preprocessing in federated learning for genomic data ow.ly/tuCe106wnnQ #JAMIAOpen
March 26, 2026 at 4:24 PM
Just released in JAMIA Open! Privacy-preserving verification of preprocessing in federated learning for genomic data ow.ly/tuCe106wnnQ #JAMIAOpen
Ethical sourcing in the context of health data supply chain management: a value sensitive design approach - Authors include our Kadija Ferryman | JAMIA Open | Oxford Academic academic.oup.com/jamiaopen/ar...
Ethical sourcing in the context of health data supply chain management: a value sensitive design approach
AbstractObjective. The Bridge2AI program is establishing rules of practice for creating ethically sourced health data repositories to support the effective
academic.oup.com
October 22, 2025 at 11:44 PM
Ethical sourcing in the context of health data supply chain management: a value sensitive design approach - Authors include our Kadija Ferryman | JAMIA Open | Oxford Academic academic.oup.com/jamiaopen/ar...