PDBe and PDBe-KB pages also link to simulations in MDposit.
🔗 www.ebi.ac.uk/pdbe/pdbe-kb...
PDBe and PDBe-KB pages also link to simulations in MDposit.
🔗 www.ebi.ac.uk/pdbe/pdbe-kb...
The PDBe wishes you a very Merry Christmas and a Happy New Year. We are delighted to share our jointly designed EMDB/PDBe Christmas card with you. It has been a busy year, and we look forward to seeing you in the New Year.
The PDBe wishes you a very Merry Christmas and a Happy New Year. We are delighted to share our jointly designed EMDB/PDBe Christmas card with you. It has been a busy year, and we look forward to seeing you in the New Year.
✅ Real-time check
✅ Metadata completeness indicator
pip install pdbe-mmcif-validator
install VS code extension: marketplace.visualstudio.com/items?itemNa...
GitHub - PDBeurope/mmcif-validator: github.com/PDBeurope/mm...
✅ Real-time check
✅ Metadata completeness indicator
pip install pdbe-mmcif-validator
install VS code extension: marketplace.visualstudio.com/items?itemNa...
GitHub - PDBeurope/mmcif-validator: github.com/PDBeurope/mm...
Developed in collaboration with PDBe (@pdbeurope.bsky.social) and UniProt, it enables fast, accurate residue-level mapping between protein sequences and structures, achieving >93% agreement with curated mappings.
Get started: github.com/PDBeurope/SI...
Developed in collaboration with PDBe (@pdbeurope.bsky.social) and UniProt, it enables fast, accurate residue-level mapping between protein sequences and structures, achieving >93% agreement with curated mappings.
Get started: github.com/PDBeurope/SI...
PDBe MCP Servers work with other AI clients too, such as Google Antigravity.
You only need one protocol for any MCP-compatible AI.
🎥 Watch the install walkthrough 👇
📦 github.com/PDBeurope/PDBe-MCP-Servers
#PDBe #MCP #GoogleAntigravity #AI
PDBe MCP Servers work with other AI clients too, such as Google Antigravity.
You only need one protocol for any MCP-compatible AI.
🎥 Watch the install walkthrough 👇
📦 github.com/PDBeurope/PDBe-MCP-Servers
#PDBe #MCP #GoogleAntigravity #AI
There are many women working to provided the resources at PDBe, AlphaFoldDB, EMDB and EMPIAR. Lets met a few of them!
#IDWGS #WomeninSTEM #WomenInScience #WhatAScientistLooksLike
There are many women working to provided the resources at PDBe, AlphaFoldDB, EMDB and EMPIAR. Lets met a few of them!
#IDWGS #WomeninSTEM #WomenInScience #WhatAScientistLooksLike
🧪 Cleaner layout
🧪 Interactive 3D viewers
🧪 Contextual annotations
🧪 Easier navigation
See for yourself:
wwwdev.ebi.ac.uk/pdbe/entry/p...
#PDBeBeta #Bioinformatics #Biochemistry #Science
🧪 Cleaner layout
🧪 Interactive 3D viewers
🧪 Contextual annotations
🧪 Easier navigation
See for yourself:
wwwdev.ebi.ac.uk/pdbe/entry/p...
#PDBeBeta #Bioinformatics #Biochemistry #Science
🔗 Explore (SARS-CoV-2 spike, PDB 9CXE): ebi.ac.uk/pdbe/pdbe-kb...
📄 Read the preprint: ssrn.com/abstract=568...
#PDBeKB #MacromolecularComplexes #StructuralBiology
🔗 Explore (SARS-CoV-2 spike, PDB 9CXE): ebi.ac.uk/pdbe/pdbe-kb...
📄 Read the preprint: ssrn.com/abstract=568...
#PDBeKB #MacromolecularComplexes #StructuralBiology
Bringing structural biology to AI: exploring the PDBe MCP servers
The session will explore the capabilities offered by the PDBe MCP servers with practical examples.
🗓️ 9 September 2026
🕘 14:30-15:30 (BST)
⬇️ Register here ⬇️
www.ebi.ac.uk/training/eve...
#PDB
Bringing structural biology to AI: exploring the PDBe MCP servers
The session will explore the capabilities offered by the PDBe MCP servers with practical examples.
🗓️ 9 September 2026
🕘 14:30-15:30 (BST)
⬇️ Register here ⬇️
www.ebi.ac.uk/training/eve...
#PDB
Here is an example from a 🥝 protein structure determined by X-ray crystallography:
www.ebi.ac.uk/pdbe/entry/p...
Here is an exampe from a virus complex structure impacting 🍇 determined by #cryoEM. www.ebi.ac.uk/pdbe/entry/p...
Here is an example from a 🥝 protein structure determined by X-ray crystallography:
www.ebi.ac.uk/pdbe/entry/p...
Here is an exampe from a virus complex structure impacting 🍇 determined by #cryoEM. www.ebi.ac.uk/pdbe/entry/p...
You know, just in case?
You know, just in case?
Try the redesigned PDBe entry pages & let us know:
🔸 What’s working?
🔸 What’s confusing?
🔸 What features do you miss?
💬 Feedback form: tinyurl.com/pdbe-beta-form
#PDBeBeta #Bioinformatics #Biochemistry #Science #UserVoice
Try the redesigned PDBe entry pages & let us know:
🔸 What’s working?
🔸 What’s confusing?
🔸 What features do you miss?
💬 Feedback form: tinyurl.com/pdbe-beta-form
#PDBeBeta #Bioinformatics #Biochemistry #Science #UserVoice
🧪 027 - Small molecules in the PDB
🧪 045 - AlphaFold Protein Structure Database
🧪 046 - Fragment-based screening data in the PDB
🧪 247 - Improved PDBe & PDBe-KB webpages
Full titles in images.
Abstracts:
🔗 www.iscb.org/ismbeccb2025...
🧪 027 - Small molecules in the PDB
🧪 045 - AlphaFold Protein Structure Database
🧪 046 - Fragment-based screening data in the PDB
🧪 247 - Improved PDBe & PDBe-KB webpages
Full titles in images.
Abstracts:
🔗 www.iscb.org/ismbeccb2025...
Discover the enhanced new Ligand pages, part of the upgraded PDBeChem service. Here's what you can explore:
Discover the enhanced new Ligand pages, part of the upgraded PDBeChem service. Here's what you can explore:
Welcome EMBL-EBI (@ebi.embl.org) to 🦋💙 Bluesky 🦋💙!
PDBe is part of EMBL-EBI & behind various resources:
- founding partner of the wwPDB,
- community-led PDBe-KB resource
- AlphaFold Protein Structure Database
(with Google DeepMind)
Haven't heard of EMBL-EBI? Take a look at what we’re working on. www.ebi.ac.uk/about/our-im...
Welcome EMBL-EBI (@ebi.embl.org) to 🦋💙 Bluesky 🦋💙!
PDBe is part of EMBL-EBI & behind various resources:
- founding partner of the wwPDB,
- community-led PDBe-KB resource
- AlphaFold Protein Structure Database
(with Google DeepMind)
Same macromolecular complex. Different experimental conditions. All assemblies in one place.
🔍 Try the beta now: wwwdev.ebi.ac.uk/pdbe/pdbe-kb...
#PDBeKB #Complexes #Bioinformatics #StructuralBiology #Science
Same macromolecular complex. Different experimental conditions. All assemblies in one place.
🔍 Try the beta now: wwwdev.ebi.ac.uk/pdbe/pdbe-kb...
#PDBeKB #Complexes #Bioinformatics #StructuralBiology #Science
🗂️ Unified view of PDB assemblies
🧬 Standardised annotations
📊 Structural metrics and interactive visualisations
🔗 wwwdev.ebi.ac.uk/pdbe/pdbe-kb...
#PDBeKB #Complexes #Bioinformatics #StructuralBiology #Science
🗂️ Unified view of PDB assemblies
🧬 Standardised annotations
📊 Structural metrics and interactive visualisations
🔗 wwwdev.ebi.ac.uk/pdbe/pdbe-kb...
#PDBeKB #Complexes #Bioinformatics #StructuralBiology #Science
⬇️
academic.oup.com/nar/advance-...
⬇️
academic.oup.com/nar/advance-...
We synchronised with UniProt release 2025_03, predicted protein isoforms across all species, and provide MSAs used to generate each prediction.
Proud of the team at the PDBe for the hard work that went into this. Grateful to play my part in it!
We'll keep developing the AlphaFold Database to support protein science worldwide 🎉
To mark the moment we’ve synchronised the database with UniProtKB release 2025_03.
www.ebi.ac.uk/about/news/t...
🖥️🧬 #AlphaFold
@pdbeurope.bsky.social
We synchronised with UniProt release 2025_03, predicted protein isoforms across all species, and provide MSAs used to generate each prediction.
Proud of the team at the PDBe for the hard work that went into this. Grateful to play my part in it!
https://studyweekend.ccp4.ac.uk/programme/
Lunchtime byte by PDBe 1-2pm on Day 2 (Jan 8)
Also, PDB Art 2025 calendar!
Get your digital pdf copy here:
https://www.ebi.ac.uk/pdbe/sites/default/files/2024-09/PDBE%20final%202025%20calendar.pdf
https://studyweekend.ccp4.ac.uk/programme/
Lunchtime byte by PDBe 1-2pm on Day 2 (Jan 8)
Also, PDB Art 2025 calendar!
Get your digital pdf copy here:
https://www.ebi.ac.uk/pdbe/sites/default/files/2024-09/PDBE%20final%202025%20calendar.pdf
🎨 www.artsteps.com/view/61eea06...
& here:
🔗 www.ebi.ac.uk/pdbe/inktobe...
#Sciart #PDBArt
🎨 www.artsteps.com/view/61eea06...
& here:
🔗 www.ebi.ac.uk/pdbe/inktobe...
#Sciart #PDBArt
That’s why the new PDBe entry pages feature an improved Model Quality tab for X-ray entries.
🔗 Check it out: wwwdev.ebi.ac.uk/pdbe/entry/p...
Cryo-EM and NMR coming soon!
#PDBeBeta #Biochemistry #Science #Crystallography
That’s why the new PDBe entry pages feature an improved Model Quality tab for X-ray entries.
🔗 Check it out: wwwdev.ebi.ac.uk/pdbe/entry/p...
Cryo-EM and NMR coming soon!
#PDBeBeta #Biochemistry #Science #Crystallography
#Bioinformatics #StructuralData #APIs #PDBe
#Bioinformatics #StructuralData #APIs #PDBe
✨ Discover the new interactive, personalised & mobile-ready PDBe Entry Pages.
📖 Read more: www.ebi.ac.uk/about/news/u...
🔍 Try it: www.ebi.ac.uk/pdbe/entry/p...
✨ Discover the new interactive, personalised & mobile-ready PDBe Entry Pages.
📖 Read more: www.ebi.ac.uk/about/news/u...
🔍 Try it: www.ebi.ac.uk/pdbe/entry/p...