#PKSs
December 22, 2024 at 9:21 AM
※nz夢/pkss #夢/顔有ネームレス
nzと彼シャツ
January 28, 2025 at 1:01 PM
※キ夢/pkss #夢/顔有ネームレス
キくん夢いろいろ
December 22, 2024 at 9:24 AM
Rom: Am 3.6.2026 richtete ein Tornado über Conca d’Oro & Prati Fiscali schwere Verwüstungen an.Wohngebäude und PKSs wurden beschädigt,Bäume entwurzelt,Stromleitungen heruntergerissen.Es gab Verletzte; medizinische Hilfe wurde geleistet.Bewohner der am stärksten beschädigten Gebäude wurden evakuiert.
June 4, 2026 at 11:04 AM
Are #lichens truly a treasure chest of #naturalproducts compared to non-lichenized #fungi? We put this to test using #BGC count as a proxy across ~400 #genomes.

Spoiler alert: They absolutely are!

#PKSs
#secondaryMetabolites
#Lecanoromycetes
#fungalGenomics

Article link: tinyurl.com/ynph7npe
February 28, 2025 at 2:30 PM
It took me about 15 months to type the history of the R&B charts into a spreadsheet so that I could organize by the date the song entered the charts.

3353 of 22,828

Etta James & Sugar Pie DeSanto
"In the Basement - Part 1"
August 13, 1966

#musicsky

www.youtube.com/watch?v=PKSS...
Etta James & Sugar Pie DeSanto - In The Basement ( Part 1)
YouTube video by Lee Miller
www.youtube.com
January 3, 2026 at 3:03 AM
This is wildly cool--I knew about the assembly-line polyketide synthases (PKSs) where multiple enzymes interact to synthesize these remarkable and complex natural products, but putting them all in one HUGE protein...WOW! 🧪
'Perhaps the hardest part of this problem is to shift our preconceptions. The size of the PKZILLAs, the researchers say, ‘expands our imagination on the capabilities of enzymes in the construction of complex molecules.’

www.chemistryworld.com/opinion/enor...
Enormous enzymes expand the limits of molecular biology
Identifying the PKZILLAs, used by algae to make toxins, stretched the capabilities of current analytical methods - and the limits of our preconceptions
www.chemistryworld.com
September 5, 2024 at 11:48 AM
Thank you @mmzdouc.bsky.social for detailing our work!
In this study we highlight conserved & unique #clusters and link 5 #lichen #metabolites to #BGCs.
Thank you @marnixmedema.bsky.social & all the collaborators 🥂!
#PKSs #RiPPs #secondaryMetabolism #depsides #fungi #MS #omics
December 21, 2025 at 1:30 PM
Innovative strategy enables modular polyketide synthases reprogramming for designer antibiotics like erythromycin and rapamycin. PMID:40251436, Nat Chem Biol 2025, @nchembio https://doi.org/10.1038/s41589-025-01878-4 #Medsky #Pharmsky #RNA #ASHG #ESHG 🧪
Plug-and-play engineering of modular polyketide synthases | Nature Chemical Biology
Modular polyketide synthases (PKSs) are multidomain, assembly line enzymes that biosynthesize complex antibiotics such as erythromycin and rapamycin. The modular characteristic of PKSs makes them an ideal platform for the custom production of designer polyketides by combinatorial biosynthesis. However, engineered hybrid PKS pathways often exhibit severe loss of enzyme activity, and a general principle for PKS reprogramming has not been established. Here we present a widely applicable strategy for designing hybrid PKSs. We reveal that two conserved motifs are robust cut sites to connect modules from different PKS pathways and demonstrate the custom production of polyketides with different starter units, extender units and variable reducing states. Furthermore, we expand the applicability of these cut sites to construct hybrid pathways involving cis-AT PKS, trans-AT PKS and even nonribosomal peptide synthetase. Collectively, our findings enable plug-and-play reprogramming of modular PKSs
doi.org
June 21, 2025 at 3:10 AM
Polyunsaturated fatty acid (PUFA) synthase enzymes turn out to be far more versatile than we ever imagined! In our new preprint, we reveal a largely untapped biosynthetic space where they team up with PKSs and NRPSs to create new types of bioactive amphiphilic metabolites.
👉http://bit.ly/4hzUUak
Charting the biosynthetic landscape of hybrid polyketide-nonribosomal peptide-specialized lipids
Polyunsaturated fatty acid (PUFA) synthase-like enzymes are best known for their role in membrane lipid biosynthesis in marine bacteria, but have also been repurposed for the assembly of specialized l...
bit.ly
October 27, 2025 at 9:56 AM
Mixing and Matching of Hybrid Megasynthases is a Hub for the Evolution of Metabolic Diversity in Cyanobacteria onlinelibrary.wiley.com/doi/10.1002/...
Mixing and Matching of Hybrid Megasynthases is a Hub for the Evolution of Metabolic Diversity in Cyanobacteria
Modular megasynthases, such as polyketide synthases (PKSs) and non-ribosomal peptide synthetases (NRPSs), are molecular assembly lines that biosynthesize many pharmaceutically and ecologically import....
onlinelibrary.wiley.com
April 21, 2025 at 3:16 PM
THE LATINO NEWSLETTER PODCAST
No More Pedestals | Season 2, Episode 13

Warning: Part of this episode includes a discussion of sexual violence.

www.youtube.com/watch?v=pkSS...
No More Pedestals
In this special episode of the Latino Newsletter podcast, host Michelle Zacarias is joined by founder Julio Ricardo Varela on the sexual abuse allegations against César Chávez. Michelle and Julio…
www.youtube.com
March 24, 2026 at 9:34 PM
The newest collaboration project has been published! Congrats to the group of @m-grininger.bsky.social 🥳

'Protocol for the purification, analysis, and handling of acyl carrier proteins from type I fatty acid and polyketide synthases'

Full text link: www.sciencedirect.com/science/arti...
Protocol for the purification, analysis, and handling of acyl carrier proteins from type I fatty acid and polyketide synthases
Acyl carrier proteins (ACPs) are key domains in fatty acid and polyketide synthases (PKSs), shuttling intermediates to catalytic partners. Here, we pr…
www.sciencedirect.com
April 14, 2025 at 10:40 AM
🔓Take a look at this #OpenAccess Highlight article from Pablo Cruz-Morales & co. @wemakemolecules.bsky.social discussing synthetic biology for heterologous expression and engineering of fungal polyketide synthases #secmet #natprod

📍 @dtu.dk
Synthetic biology for heterologous expression and engineering of fungal polyketide synthases
Covering: up to 2025Polyketide synthases (PKSs) are essential enzymatic systems that produce a wide range of natural products. Their biosynthetic features offer significant opportunities to create a…
pubs.rsc.org
March 20, 2026 at 12:43 PM
Preprint alert!! 🎉 Ever struggle to activate a carrier protein? Led by Kenneth Hsu (Haverford '25), the Charkoudian Lab unearthed a novel PPTase from Dictyobacter vulcani 🌋 with remarkable promiscuity (in our case, better than Sfp & AcpS)!

Grateful to be an alum of this phenomenal research team 💗
A Phosphopantetheinyl Transferase from Dictyobacter vulcani sp. W12 Expands the Combinatorial Biosynthetic Toolkit
The value of microbial natural product pathways extends beyond the chemicals they produce, as the enzymes they encode can be harnessed as biocatalysts. Microbial type II polyketide synthases (PKSs) ar...
www.biorxiv.org
March 28, 2025 at 8:45 PM
The cover figure was hand drawn by Lisa Goebner, co-author of ‘Heterologus expression of NRPS and PKS pathways in Escherichia coli: from bottlenecks to biosynthetic platforms’ (doi.org/10.1042/EBC2...)
Heterologous expression of NRPS and PKS pathways in Escherichia coli: from bottlenecks to biosynthetic platforms
Abstract. Microbial natural products (NPs) represent one of the most important sources of bioactive compounds in medicine, agriculture, and biotechnology. Non-ribosomal peptide synthetases (NRPSs) and polyketide synthases (PKSs) are large multidomain complexes that enable the efficient generation of highly diverse and complex NPs. Advances in genome sequencing and bioinformatics have revealed an enormous and largely untapped biosynthetic potential encoded in microbial genomes. However, the majority of NPs remain inaccessible due to a lack of genetic tools, silent biosynthetic gene clusters (BGCs) or the inability to culture the vast majority of microbes. Heterologous expression has therefore emerged as a key strategy to access and engineer NPs. Among available expression platforms, Escherichia coli is a pivotal host due to its rapid growth, genetic tractability, and unparalleled molecular toolbox. This review focuses on heterologous expression of NRPS/PKS pathways in E. coli, with particular emphasis on experimental optimisation strategies. Drawing on selected case studies, we highlight how systematic approaches—such as promoter refactoring, expression-rate tuning, chaperone or helper protein co-expression, metabolic engineering, precursor feeding, and cultivation optimisation—can transform initially unsuccessful systems into productive expression platforms. Collectively, these examples illustrate that apparent limitations in E. coli are engineering challenges rather than intrinsic barriers.
doi.org
August 23, 2026 at 3:52 PM
A Nature Chem Bio study reveals a novel mech of condensation-independent chain transfer in trans-AT PKS. KS⁰ acts as transacylase! PMID:42032097, Nat Chem Biol 2026, @nchembio https://doi.org/10.1038/s41589-026-02209-x #Medsky #Pharmsky #RNA #ASHG #ESHG 🧪
Condensation-independent intramodular translocation mechanism of the trans-AT polyketide synthase assembly line | Nature Chemical Biology
Decarboxylative condensation drives chain elongation and translocation of polyketides and fatty acids. However, the mechanism by which nonelongating modules in trans-acyltransferase polyketide synthases (trans-AT PKSs) enable intramodular polyketide chain translocation without decarboxylation remains poorly understood. Here we elucidate a condensation-independent intramodular translocation mechanism in which KS0 within the nonelongating module operates as a transacylase, directly translocating the polyketide chain to its downstream cognate acyl carrier protein (ACP). Notably, the inherent demalonylation activity of trans-ATHtmA7 facilitates efficient ACP recycling ensuring intramodular translocation. Structural modeling and site-directed mutagenesis studies uncover a conserved KS0–ACP binding mode that underpins intramodular translocation across diverse nonelongating modules. Additionally, the strict discrimination of polyketide intermediate by the nonelongating module highlights its c
doi.org
May 25, 2026 at 6:20 AM
Really pleased to share that I am co-leading one of these newly funded studies with the fantastic Dr Katharine Weetman: "Identifying core components of care transitions from specialist palliative care to primary care".

Find out more here: www.youtube.com/watch?v=pkSs...

It builds on...
July 14, 2026 at 2:54 PM
🔓Check out this #OpenAccess review from Kira J. Weissman @univlorraine.bsky.social discussing the decision making by modular polyketide synthases and the implications for genetic engineering #secmet #natprod

Read the full article here🔽
Decision making by modular polyketide synthases and implications for genetic engineering
Covering: up to 2025 Modular polyketide synthases (PKSs) are often described as molecular-scale assembly lines – a moniker that implies a high-degree of coordinated and regulated activity. Belying…
pubs.rsc.org
June 9, 2026 at 11:07 AM
fluorescence-based solubility biosensor that can quickly identify engineered PKSs variants with minimal structural disruptions
Biosensor Guided Polyketide Synthases Engineering for Optimization of Domain Exchange Boundaries - N...
Engineering polyketide synthases can be challenging due to the absence of efficient high-throughput methods. Here, the authors used a solubility biosensor to identify stable variants from libraries of...
www.nature.com
August 13, 2023 at 8:32 PM
Experimentally, gLM2-designed variants increased production of δ-valerolactam, a molecule not naturally synthesized by PKSs, by up to 9.4× over the starting enzyme.
September 18, 2026 at 2:38 PM