#SpatialTranscriptomic
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matrisome.bsky.social
Excited to launch #MatriSpace: a framework for mining #SpatialTranscriptomic data with a focus on matrisome genes co-developed with @valerioizzi.bsky.social

🔗 @biorxivpreprint.bsky.social: doi.org/10.64898/202...

🔗 ShinyApp: matrinet.shinyapps.io/matrispace/

#ECM #Matrisome #MatriTool #OpenAccess
April 30, 2026 at 6:44 PM
earlhaminst.bsky.social
We're excited to share that we've expanded our #SpatialTranscriptomic capabilities with the addition of the @vizgen.bsky.social MERSCOPE Ultra, thanks to funding from the @ukri.org BBSRC ALERT scheme!

🔗 buff.ly/sUekTX5
New BBSRC funding supports expansion of transformative spatial science
The new system builds on the Institute’s existing spatial transcriptomic infrastructure.
buff.ly
September 23, 2025 at 1:02 PM
cantoneirene.bsky.social
Advice needed: can you distinguish splicing variants by commercial #spatialtranscriptomic (eg visium)? #singlecell #omics
October 13, 2025 at 9:58 AM
jef.works
In this #codetutorial, I quickly identify spatially variable genes in a #spatialtranscriptomic dataset w/ 377,985 cells by combining our recently developed preprocessing tool SEraster with our existing tool MERINGUE.

Try it out for yourself: jef.works/blog/2024/03...

#AcademicSky #Rstats
March 24, 2024 at 2:32 PM
gregorylab.bskyverified.social
Gregory lab #PhD student, Lauren Whaley Powers, attended #SNO25 in beautiful Honolulu & presented her poster:

'Integrative #SingleNuclei #SpatialTranscriptomic profiling of primary and recurrent human #GBM reveals cell-type specific #EGFRvIII expression & #ANXA1 signaling axis' 🧠🧬🔬💻🌺
December 9, 2025 at 2:58 PM
naveed-ishaque.bsky.social
Have you been bothered that practically every #SpatialTranscriptomic analysis tool assumes data to be 2D? Well, you were right - overlapping cells are a really big problem. Check out our report on bioRxiv: 2D, or not 2D? Investigating Vertical Signal Integrity of Tissue Slices. t.ly/CQX8K
2D, or not 2D? Investigating Vertical Signal Integrity of Tissue Slices
Imaging-based spatially resolved transcriptomics can localise transcripts within cells in 3D. Cell segmentation precedes assignment of transcripts to cells and annotation of cell function. However, ce...
t.ly
February 8, 2025 at 9:43 AM
biorxiv-bioinfo.bsky.social
A Comprehensive Benchmarking of Spatial Deconvolution andDomain Detection Methods across Diverse Tissues and SpatialTranscriptomic Technologies https://www.biorxiv.org/content/10.64898/2026.05.11.724248v1
May 14, 2026 at 1:47 AM
biorxivpreprint.bsky.social
A Comprehensive Benchmarking of Spatial Deconvolution andDomain Detection Methods across Diverse Tissues and SpatialTranscriptomic Technologies https://www.biorxiv.org/content/10.64898/2026.05.11.724248v1
May 14, 2026 at 1:47 AM
thejidinnovations.bsky.social
Spatial transcriptomic profiling reveals #fibroblast and inflammatory signatures in calcinosis of chronic cutaneous #lupus
Bao et al
https://ow.ly/p4zI50ZheQR
#dermatology #dermscience #derm #dermatologia #dermresearch #dermscience #spatialtranscriptomic
July 18, 2026 at 3:50 PM
dom-somma.genomic.social.ap.brid.gy
Finally, our paper studying synovial tissue # DC #dendtriticcells in joint health and #rheumatoidarthritis is out in Immunity!
#scrnaseq #spatialtranscriptomic
From: @ImmunityCP
https://mstdn.science/@ImmunityCP/113557582489769767
November 28, 2024 at 11:34 AM
aixa-v-morales.bsky.social
Are you a PhD interested in #adultneurogenesis and #spatialtranscriptomic in the mouse brain ?
You can apply now for a #JuanDeLaCierva posdoctoral grant from MICIU at our lab @institutocajal.bsky.social @csic.es 🧠🐭
Please, write us before the 5th of December !!
⬇️
aei.gob.es/convocatorias/…
November 26, 2025 at 2:22 PM
myesmo.bsky.social
#MAP2026: #SpatialTranscriptomic analyses identified actionable cellular and molecular #biomarkers, including a 9-gene cell surface signature as potential therapeutic targets in #osteosarcoma, as discussed by Emanuela Palmerini. #ESMODailyReporter: https://ow.ly/2GAg50ZLTAF

September 10, 2026 at 12:35 PM
thejidjournal.bsky.social
Take a look at the August issue cover video:
hashtag#Spatialtranscriptomic mapping of early hidradenitis suppurativa
youtu.be/OJCuq1jyueo

#DermatologyJournal #dermatology #dermsky #dermatologists #dermresearch #dermscience #dermatologyresearch
JID August 2026: Spatial transcriptomic mapping of early hidradenitis suppurativa
YouTube video by Journal of Investigative Dermatology (JID)
youtu.be
August 10, 2026 at 12:18 PM
prepub-singlecell.bsky.social
Generative cerebral vasculature visualization using spatialtranscriptomic data #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.1101/2025.07.10.664153v1
July 16, 2025 at 7:00 AM
haoyin.bsky.social
Benchmarking sequencing-based #SpatialTranscriptomic methods

#10xVisium
#HDST
#BMKMANUS1000
#SlideseqV2
#Stereoseq
#PIXELseq
#DBiTseq

Different ST methods yield inconsistent cell-cell communication results by #CellChat #CellPhoneDB

bioRxiv 2023
www.biorxiv.org/content/10.1...
January 3, 2024 at 6:16 PM
gregorylab.bskyverified.social
Had a great time presenting Lauren Whaley's work at the #AACR26 poster sesson!

'Integrative #SingleNuclei #SpatialTranscriptomic profiling of primary and recurrent human #glioblastoma reveals cell-specific EGFRvIII expression & ANXA1 signaling axis'

#GBM 🧬🧠
April 21, 2026 at 2:04 PM
biorxivpreprint.bsky.social
Generative cerebral vasculature visualization using spatialtranscriptomic data https://www.biorxiv.org/content/10.1101/2025.07.10.664153v1
July 16, 2025 at 5:16 AM
biorxiv-neursci.bsky.social
Generative cerebral vasculature visualization using spatialtranscriptomic data https://www.biorxiv.org/content/10.1101/2025.07.10.664153v1
July 16, 2025 at 5:16 AM