#Matrisome
📣 Hot off the press: our review, “Understanding and targeting the tumour matrisome,” is now published in @natrevclinonc.nature.com!
🔗 doi.org/10.1038/s415...

#ExtracellularMatrix #Matrisome #Matrisomics #Matritherapies #HallmarksOfCancer #TumorMicroenvironment
September 21, 2026 at 2:25 PM
📣 Publication alert: Our paper, “A guide to building the matrisome interactome: from computational predictions to experimental validation” is now published in @febsj.bsky.social!
📄 The paper is available in #OpenAccess at: doi.org/10.1111/febs...
#ECM #Matrisome #Interactome #SystemsBiology
November 25, 2025 at 2:10 AM
Excited to launch #MatriSpace: a framework for mining #SpatialTranscriptomic data with a focus on matrisome genes co-developed with @valerioizzi.bsky.social

🔗 @biorxivpreprint.bsky.social: doi.org/10.64898/202...

🔗 ShinyApp: matrinet.shinyapps.io/matrispace/

#ECM #Matrisome #MatriTool #OpenAccess
April 30, 2026 at 6:44 PM
Understanding and targeting the tumour matrisome
Karamanos, N. K. et al. A guide to the composition and functions of the extracellular matrix. FEBS J. 288, 6850–6912 (2021). Sahai, E. et al. A framework for advancing our understanding of cancer-associated fibroblasts. Nat. Rev. Cancer 20, 174–186 (2020). Kessenbrock, K., Plaks, V. & Werb, Z. Matrix metalloproteinases: regulators of the tumor microenvironment. Cell 141, 52–67 (2010). Anastassiades, O. T. & Pryce, D. M. Fibrosis as in indication of time in infiltrating breast cancer and its importance in prognosis. Br. J. Cancer 29, 232–239 (1974). Halvorsen, T. B. & Seim, E. Association between invasiveness, inflammatory reaction, desmoplasia and survival in colorectal cancer. J. Clin. Pathol. 42, 162–166 (1989). Barsky, S. H., Rao, C. N., Grotendorst, G. R. & Liotta, L. A. Increased content of type V collagen in desmoplasia of human breast carcinoma. Am. J. Pathol. 108, 276–283 (1982). Shimosato, Y. et al. Prognostic implications of fibrotic focus (scar) in small peripheral lung cancers. Am. J. Surg. Pathol. 4, 365–373 (1980). Winer, A., Adams, S. & Mignatti, P. Matrix metalloproteinase inhibitors in cancer therapy: turning past failures into future successes. Mol. Cancer Ther. 17, 1147–1155 (2018). Sparano, J. A. et al. Randomized phase III trial of marimastat versus placebo...
www.nature.com
September 22, 2026 at 7:37 AM
Check out my feature in the @themeshwork.bsky.social newsletter 👩‍🔬 thanks for the opportunity to share my path and thoughts! Follow them for more ECM enrichment 😊 speaking of enrichment…the matrisome legend @nabalabuic.bsky.social will give a scientific talk on the matrisome Dec 12, RSVP below!
Did someone say newsletter? Our November-December issue is here!!! Spotlight of the month @drjake314.bsky.social, latest publications @nabalabuic.bsky.social, polls, event alerts, calendar updates and sneak peak from our video interview with @jayeperview.bsky.social For your eyes only. Take a look👇
December 5, 2024 at 1:02 PM
📣 Everything you always wanted to know about the #ECM (but were afraid to ask). Join me at @themeshwork.bsky.social seminar series in December to learn about the latest developments of the #Matrisome project @matrisome.bsky.social! Sign up here forms.gle/W3QFUheh9hf5... and help us spread the word!
November 26, 2024 at 3:35 AM
@nabalabuic.bsky.social opening up the Uncovering the Matrisome BSMB conference at Surrey.
September 2, 2025 at 12:19 PM
This study maps the Nematostella matrisome, the genes that build and maintain its structural support system, showing how these components change across life stages.
buff.ly/pioKnKZ
November 2, 2025 at 9:21 AM
I learned a new word - the matrisome. The complex protein components of the extracellular matrix, modified and regulated by senescent cells via SASP. Matrisome-derived proteins are key source of plasma and exosome senescence biomarkers.
November 15, 2024 at 1:05 AM
🚨PhD opportunity at the Becker with our Director Prof Tracy Hussell and Dr Rob Metcalf investigating the immune microenvironment and matrisome of adenoid cystic carcinoma (ACC). #immunosky #cancer #phd

Find out more👇
www.findaphd.com/phds/project...
(Bicentenary) Characterizing the Immune Microenvironment and Matrisome of Adenoid Cystic Carcinoma at The University of Manchester on FindAPhD.com
PhD Project - (Bicentenary) Characterizing the Immune Microenvironment and Matrisome of Adenoid Cystic Carcinoma at The University of Manchester, listed on FindAPhD.com
www.findaphd.com
December 1, 2024 at 6:56 PM
Rijuta Lamba, Alexandra Naba @nabalabuic.bsky.social, @valerioizzi.bsky.social and team present MatriCom, a single-cell RNA-sequencing data mining tool to infer cell–ECM interactions.
Highlight: journals.biologists.com/jcs/article/...
Article: journals.biologists.com/jcs/article/...
#OpenAccess
July 16, 2025 at 8:59 AM
🎉 A big milestone for the #MatrisomeProject!
Congratulations to the Özbek group at @embl.org for the release of the matrisome of the sea anemone in @elife.bsky.social, the 10th dataset powered by the @matrisome.bsky.social pipeline!
Here’s to the power of #OpenScience 🚀 🔬
matrisome.org
matrisome.org
November 11, 2025 at 9:51 PM
Isolation Strategy Shapes the Matrisome Landscape of Cancer-Associated Fibroblast Extracellular Vesicles https://www.biorxiv.org/content/10.64898/2026.05.22.727064v1
May 26, 2026 at 4:50 PM
And what about *they also made a commentary of our work*??? I really really love JCS!!!
journals.biologists.com/jcs/article/...
MatriCom – the extracellular matrix reloaded
The extracellular matrix (ECM) is made up of hundreds of proteins, including structural core ‘matrisome’ proteins, factors that associate with and regulate ECM architecture and dynamics, and ECM recep...
journals.biologists.com
July 12, 2025 at 3:48 PM
December is here & we're granting wishes!!! We're super pumped to be hosting @nabalabuic.bsky.social for a talk on The Matrisome project plus - a special surprise just for The Meshwork community - a demo of MatriTools! Chair: @collagenyoshi.bsky.social
Register now: forms.gle/7x3q7AfPNp38...
December 2, 2024 at 8:17 AM
Global matrisome changes in obese lung are linked to fibroblastic stroma and premature aging
Global matrisome changes in obese lung are linked to fibroblastic stroma and premature aging
Rottmann et al. use multi-omics and functional assays to show that obesity remodels the lung matrisome and enhances fibroblast contractility, exhibiting hallmarks of aging. These changes mirror premature aging signatures in the lung, linking overnutrition to impaired pulmonary function.
dlvr.it
September 22, 2025 at 2:38 PM
Back from vacation full of energy for the week ahead 😀
Looking forward to presenting the latest developments of the #Matrisome at @themeshwork.bsky.social seminar on Thursday and to providing an update on the work from my lab on Friday at the UIC Department of Physiology and Biophysics seminar!
December 9, 2024 at 6:59 PM
Curious about the matrisome of Nematostella vectensis? Check the new paper of the Özbek group now published in eLife. doi.org/10.7554/eLif...
@elife.bsky.social
Molecular dynamics of the matrisome across sea anemone life history
Integrated proteomic and single-cell transcriptomic analyses define the Nematostella vectensis matrisome and reveal conserved extracellular matrix functions driving life cycle transitions in this non-...
doi.org
October 24, 2025 at 6:15 AM
Seminar Sessions:
1. Engineering the 4D Matrisome: From Developmental Logic to Tissue Architecture
2. Molecular Architecture, Dynamics and Signaling
3. The Matrisome in Disease
4. Career Architecture: Navigating Scientific Transitions & Professional Growth. (3/6)
September 9, 2026 at 7:42 PM
What a way to wrap up 2024!!! A top notch webinar from
@nabalabuic.bsky.social chaired by @collagenyoshi.bsky.social on The Matrisome project, all the tools available to #ECMatrix researchers and how to use them!!! Bright things up ahead for the matrix field!!! Can't wait for what's next.
December 13, 2024 at 9:57 AM
An Extracellular Matrix Aging Clock Based on Circulating Matrisome Proteins Predicts Biological Aging and Disease
onlinelibrary.wiley.com/doi/full/10....
An Extracellular Matrix Aging Clock Based on Circulating Matrisome Proteins Predicts Biological Aging and Disease
A 14-protein extracellular matrix aging clock derived from circulating matrisome proteins predicts chronological and biological age across cohorts and biofluids, distinguishes health from disease, an....
onlinelibrary.wiley.com
April 18, 2026 at 12:04 AM
New #stemcellreports paper: Unraveling the matrisome signatures of quiescent and activated muscle stem cells. #Myoblue tinyurl.com/ycyy3nw5
Unraveling the matrisome signatures of quiescent and activated muscle stem cells
The extracellular matrix (ECM) niche regulates skeletal muscle stem cell (MuSC) behavior. Using transcriptomic data and 3D imaging, they show that quiescent MuSCs express unique ECM markers, including...
tinyurl.com
September 11, 2025 at 6:02 PM
Alcohol-related Hepatitis

Hepatocyte YAP ⏫Myofibroblast prolif/inflamm
Pro-fibrotic GDF15 paracrine

Human hepatocyte organoids in type 2 BME
AH vs Cirrhosis
⬇️Hepatocyte marker ALB CYP3A4 ALDOB
⬆️Cholangiocyte marker KRT19

+Spatial Matrisome

#JHEPRep 2025
www.sciencedirect.com/science/arti...
November 27, 2025 at 12:40 PM