#matrisome
📣 Calling all MatrixDB users!
#MatrixDB is now hosted on an Expasy server at the @sib.swiss
🔖 Make sure to bookmark the new URL: matrixdb.expasy.org
#Matrisome #ECM #ProteinInteraction #ProteinNetwork #Interactome #Database #OpenAccess
October 15, 2026 at 2:31 PM
🔬 Burkhard et al. discussed how pericytes contribute to the synthesis and remodelling of the ECM in different pathophysiological conditions, and shared an atlas of the pericyte matrisome:
📕 Proteolytic remodelling of the extracellular matrix by pericytes ➡️ buff.ly/NhJzFIi
#pericyte #ECM #matrisome
September 28, 2026 at 11:40 AM
Understanding and targeting the tumour matrisome
Karamanos, N. K. et al. A guide to the composition and functions of the extracellular matrix. FEBS J. 288, 6850–6912 (2021). Sahai, E. et al. A framework for advancing our understanding of cancer-associated fibroblasts. Nat. Rev. Cancer 20, 174–186 (2020). Kessenbrock, K., Plaks, V. & Werb, Z. Matrix metalloproteinases: regulators of the tumor microenvironment. Cell 141, 52–67 (2010). Anastassiades, O. T. & Pryce, D. M. Fibrosis as in indication of time in infiltrating breast cancer and its importance in prognosis. Br. J. Cancer 29, 232–239 (1974). Halvorsen, T. B. & Seim, E. Association between invasiveness, inflammatory reaction, desmoplasia and survival in colorectal cancer. J. Clin. Pathol. 42, 162–166 (1989). Barsky, S. H., Rao, C. N., Grotendorst, G. R. & Liotta, L. A. Increased content of type V collagen in desmoplasia of human breast carcinoma. Am. J. Pathol. 108, 276–283 (1982). Shimosato, Y. et al. Prognostic implications of fibrotic focus (scar) in small peripheral lung cancers. Am. J. Surg. Pathol. 4, 365–373 (1980). Winer, A., Adams, S. & Mignatti, P. Matrix metalloproteinase inhibitors in cancer therapy: turning past failures into future successes. Mol. Cancer Ther. 17, 1147–1155 (2018). Sparano, J. A. et al. Randomized phase III trial of marimastat versus placebo...
www.nature.com
September 22, 2026 at 7:37 AM
📣 Hot off the press: our review, “Understanding and targeting the tumour matrisome,” is now published in @natrevclinonc.nature.com!
🔗 doi.org/10.1038/s415...

#ExtracellularMatrix #Matrisome #Matrisomics #Matritherapies #HallmarksOfCancer #TumorMicroenvironment
September 21, 2026 at 2:25 PM
Seminar Sessions:
1. Engineering the 4D Matrisome: From Developmental Logic to Tissue Architecture
2. Molecular Architecture, Dynamics and Signaling
3. The Matrisome in Disease
4. Career Architecture: Navigating Scientific Transitions & Professional Growth. (3/6)
September 9, 2026 at 7:42 PM
Excited to share that Saket Bagde @saketbagde.bsky.social and I @junzhe28.bsky.social are chairing the 2027 Fibronectin, Integrins & Related Molecules GRS in Ventura, CA, 6-7 Feb 2027!
Theme: The 4D Matrisome: Integrating Architecture & Dynamics from Morphogenesis to Disease.
Applications are OPEN!
September 9, 2026 at 7:42 PM
Seminar Sessions:
1. Engineering the 4D Matrisome: From Developmental Logic to Tissue Architecture
2. Molecular Architecture, Dynamics and Signaling
3. The Matrisome in Disease
4. Career Architecture: Navigating Scientific Transitions & Professional Growth (3/6)
September 9, 2026 at 7:04 PM
BRD2, via its ET tail, impairs iPSC generation in early reprogramming by maintaining the somatic transcription, especially, the somatic matrisome program, and by suppressing lipid biosynthesis. #Lipid deficiency is a barrier to reprogramming. Article ⬇️
doi.org/10.1038/s420...
@kejinhu.bsky.social
BRD2 impedes iPSC reprogramming by regulating lipid biosynthesis and the matrisome via its ET tail - Communications Biology
BRD2, via its ET tail, impairs iPSC generation in early reprogramming by maintaining the somatic transcription, especially, the somatic matrisome program, and by suppressing lipid biosynthesis. Lipid ...
doi.org
September 9, 2026 at 7:35 AM
Deciphering Cell-Type and Temporal-Specific Matrisome Expression Signatures in Human Cortical Development and Neurodevelopmental Disorders via scRNA-Seq Meta-Analysis #SingleCell 🧪🧬🖥️
https://www.biorxiv.org/content/10.1101/2025.02.24.639826v1
February 25, 2025 at 10:23 AM
A Single-Step Protein Extraction for Lung Extracellular Matrix Proteomics Enabled by the Photocleavable Surfactant Azo and timsTOF Pro #MCP www.mcponline.org/article/S153...
A Single-Step Protein Extraction for Lung Extracellular Matrix Proteomics Enabled by the Photocleavable Surfactant Azo and timsTOF Pro
The extracellular matrix (ECM) is a dynamic, complex network of proteins, collectively known as the 'matrisome’, which not only provides essential structural support to cells and tissues but also regu...
www.mcponline.org
March 18, 2025 at 6:59 PM
#JobOffer
20-month postdoc position w/ Joëlle Vinh #ESPCIAlum

Pharmacological approach to limit white adipose tissue fibrosis & improve metabolic health upon weight loss.

Characterization of the matrisome in the white adipose tissue from patients with obesity

www.smbp.espci.fr/Opening-of-a...
Spectrométrie de Masse Biologique et Protéomique SMBP ESPCI : Opening of a 20 months postdoctoral position in January 2025
Spectrométrie de Masse Biologique et Protéomique/Biological Mass Spectrometry and Proteomics
www.smbp.espci.fr
November 29, 2024 at 10:50 AM
New research from University of Aberdeen neuroscientists shows how matrisome genes guide brain development and relate to neurodevelopmental disorders. @eunchaikang.bsky.social @uniofaberdeen.bsky.social
Read more: www.nature.com/articles/s41...
Deciphering cell-type-and temporally specific matrisome expression signatures in human cortical development and neurodevelopmental disorders via scRNA-seq meta-analysis - Nature Communications
Human cortical development involves dynamic changes in matrisome gene expression across cell types and developmental stages. Here, authors show that these changes reveal links to neurodevelopmental di...
www.nature.com
November 11, 2025 at 4:38 PM
1 week to go until I kick off an exciting conference season!

📍 1st stop, the NCI for the Tumor Fibrosis workshop

📍 2nd stop, 🇩🇰 for #ECM2026

📍 3rd stop, 🇫🇷 and my alma mater, the @institutcurie.bsky.social

📍 Last but not least, 🇫🇮 for #MBE2026

#TheMatrixIsEverywhere #ECM #Matrisome
June 1, 2026 at 2:12 PM
The newly redesigned #Matrisome Portal is now live: matrisome.org.
Built to meet #ADA standards, the new site improves accessibility, usability, and overall experience for all.
Big shout-out to Tali for leading this effort!
Take a look and let us know what you think!
#Accessibility #ADACompliance
April 27, 2026 at 8:22 PM
Last post before taking off for a 2-week vacation!
I am thrilled to share that my lab has joined the @geneontology.bsky.social consortium as curator of all things #ECM and has contributed to the latest GO paper, now published in @narjournal.bsky.social: doi.org/10.1093/nar/...!
#Matrisome #MatriGO
December 19, 2025 at 10:53 PM
📣 Publication alert: Our paper, “A guide to building the matrisome interactome: from computational predictions to experimental validation” is now published in @febsj.bsky.social!
📄 The paper is available in #OpenAccess at: doi.org/10.1111/febs...
#ECM #Matrisome #Interactome #SystemsBiology
November 25, 2025 at 2:10 AM
🎉 A big milestone for the #MatrisomeProject!
Congratulations to the Özbek group at @embl.org for the release of the matrisome of the sea anemone in @elife.bsky.social, the 10th dataset powered by the @matrisome.bsky.social pipeline!
Here’s to the power of #OpenScience 🚀 🔬
matrisome.org
matrisome.org
November 11, 2025 at 9:51 PM
In collaboration with Pam Kreeger's lab, we asked whether differences in the #ECM of the omentum and mesentery could explain the difference in prevalence of ovarian cancer metastasis to these sites. Read our preprint to learn what we found! #HGSOC #Matrisome www.biorxiv.org/content/10.1...
Comparative proteomic analysis of the ECM composition of the human omentum and mesentery, the main sites of ovarian cancer metastasis
Due to its limited symptoms, high-grade serous ovarian cancer (HGSOC) has frequently metastasized extensively throughout the peritoneal cavity prior to its diagnosis, resulting in an overall five-year...
www.biorxiv.org
August 1, 2025 at 2:10 AM
Back from vacation full of energy for the week ahead 😀
Looking forward to presenting the latest developments of the #Matrisome at @themeshwork.bsky.social seminar on Thursday and to providing an update on the work from my lab on Friday at the UIC Department of Physiology and Biophysics seminar!
December 9, 2024 at 6:59 PM
📣 Everything you always wanted to know about the #ECM (but were afraid to ask). Join me at @themeshwork.bsky.social seminar series in December to learn about the latest developments of the #Matrisome project @matrisome.bsky.social! Sign up here forms.gle/W3QFUheh9hf5... and help us spread the word!
November 26, 2024 at 3:35 AM
📢 Hot off the press! Amanpreet's review titled "Proteomic insights into the ECM: a focus on proteoforms and their implications in health and disease" is now out in Expert Review of Proteomics! #Matrisome #PTM #Proteoforms doi.org/10.1080/1478....
November 18, 2024 at 8:56 PM