#TransposableElements
LightNews LightNews
toheitka.bsky.social
Scraping who is on the platform working on #TransposableElements or other types of #RepetitiveDNA

Have fun!

go.bsky.app/7t5GQAP
November 10, 2024 at 10:47 PM
jsantoyo.bsky.social
Pangenome analysis of transposable element insertion polymorphisms reveals features underlying cold tolerance in rice. #TransposableElements #TE #Pangenomes #RiceGenomes @natcomms.nature.com
www.nature.com/articles/s41...
August 17, 2025 at 7:05 PM
jsantoyo.bsky.social
Starship giant transposable elements cluster by host taxonomy using k-mer-based phylogenetics. #TransposableElements #TEs #Kmer #Phylogenetics #Genomics #Bioinformatics #G3 🧬 🖥️
academic.oup.com/g3journal/ad...
June 2, 2025 at 5:06 PM
jsantoyo.bsky.social
TEtrimmer: a tool to automate the manual curation of transposable elements. #TransposableElements #ManualCuration #Genomics #Bioinformatics @natcomms.nature.com 🧬 🖥️
www.nature.com/articles/s41...
September 27, 2025 at 6:05 PM
tobybarilbio.bsky.social
#TEsky #TEworldwide #Transposons #Bioinformatics #Bioconda #GenomeAnnotation #TransposableElements #Genomics #ComparativeGenomics
tobybarilbio.bsky.social Toby Baril @tobybarilbio.bsky.social · Jan 5
☕Earl Grey v7.0.0 brewed fresh☕

Nested TEs finally get the treatment they deserve: iterative detection of deep nesting, cleaner GFF annotations, and coverage stats that don’t double-count genomic space + a RepeatCraft edge-case fix.

Happy new year to the TE folks! 🧬

github.com/TobyBaril/Ea...
GitHub - TobyBaril/EarlGrey: Earl Grey: A fully automated TE curation and annotation pipeline
Earl Grey: A fully automated TE curation and annotation pipeline - TobyBaril/EarlGrey
github.com
January 5, 2026 at 3:12 PM
linudz.bsky.social
Loved the sticker. It’s totally fridge-level. @hayleybethfree.bsky.social #ESEB2025 #ESEB25 #TransposableElements
August 19, 2025 at 8:45 PM
natcellbio.nature.com
👋Our November issue's out!
Cover: Electrostatic forces in condensates

👉🏼Comments: #DEI; #statistics #CellBiology; german #StemCell network
🔬 #ferroptosis #mitochondria #PhaseSeparation #EmbryoModels #transcriptomics #chromatin #cancer #TransposableElements & more!
www.nature.com/ncb/volumes/...
November 14, 2025 at 8:07 PM
tobybarilbio.bsky.social
🎉 EarlGrey ParTEA v0.1.6 is here! Huge thanks to everyone who's tried the pipeline and shared feedback — your suggestions directly shaped these new features. 🍵

#TEworldwide #transposableelements #bioinformatics #genomics
April 9, 2026 at 2:18 PM
jsantoyo.bsky.social
Detecting transposable elements in long read genomes using sTELLeR. #TransposableElements #TEs #LongRead #Sequencing #Genomcis #Bioinformatics 🧬🖥️
academic.oup.com/bioinformati...
academic.oup.com
November 19, 2024 at 11:26 PM
jsantoyo.bsky.social
Comprehensive benchmarking with guidelines for analyzing transposable element-derived RNA expression. #TransposableElements #Benchmarking #RNAexpression @biorxivpreprint.bsky.social 🧬 🖥️
www.biorxiv.org/content/10.1...
October 11, 2025 at 7:32 AM
johannconfais.bsky.social
📢 We (@clementgoubert.bsky.social @ritarebollo.bsky.social) are happy to share our new mini-review: “Computational Tools and Lessons Learned from Annotating Transposable Elements in Insect Genomes” doi.org/10.1016/j.co...

#TransposableElements #TEannotation #InsectGenomics #Bioinformatics #TEsky 🧵👇
Redirecting
doi.org
September 7, 2026 at 6:16 AM
toheitka.bsky.social
🧬🔎 Deep dive into plant #TransposableElements

❓ If you identify all autonomous #TEs, you will automatically also have all non-coding derivates, right? Right?

Well, no! Not even close. Check out here, how much you are missing:

📚 www.biorxiv.org/content/10.6...

#TEsky
www.biorxiv.org
March 7, 2026 at 9:21 PM
mobotmuseum.bsky.social
#TransposableElements A Homage to Barbara McClintock and Hopi Zea mays, artwork series by Megan Singleton in #KernelsOfCulture #MaizeAroundTheWorld
This artwork commission is sponsored by Nancy Ridenour.
megansingleton.com
Pix: Hopi Purple and Hopi Turquoise photograph series and art book
February 10, 2025 at 6:20 PM
plantepigenetics.ch
I am really proud that our patent application has now been accepted in the US!
#TransposableElements #breeding #crops #ClimateChange
ppubs.uspto.gov/dirsearch-pu...
December 5, 2024 at 6:01 AM
jsantoyo.bsky.social
Unmasked: transposable elements as drivers and targets in cancer. #TransposableElements #TEs #CancerDrivers @cp-trendsgenetics.bsky.social
www.cell.com/trends/genet...
September 15, 2025 at 4:32 PM
darrenobbard.bsky.social
#PGG57 Almoro Scarpa on the glorious dynamism of #TransposableElements #TEs in #Drosophila
January 9, 2024 at 2:31 PM
jsantoyo.bsky.social
Transcriptional and post-transcriptional regulation of transposable elements and their roles in development and disease. #TEs #TransposableElements @natrevmcb.nature.com
www.nature.com/articles/s41...
July 1, 2025 at 1:49 PM
qmulepigenetics.bsky.social
Check out this exciting preprint from @pradeepmadapura.bsky.social
#preeclampsia can be predicted even before the appearance of the symptoms using #Transposableelements levels in #cfRNA www.biorxiv.org/content/10.1...
November 16, 2024 at 5:28 PM
epi2trans.bsky.social
Dear postdoc fellows, interested in applying for MSCA Postdoc Fellowship with team Epi2Trans at LGDP CNRS/UPVD in Perpignan, France? Get in touch with us! #MSCA #Postdoctoral #PlantScience #Epigenetics #TransposableElements #CNRS #UPVD www.linkedin.com/in/guillaume...
www.linkedin.com
February 16, 2026 at 5:51 PM
natcellbio.nature.com
☕ @katerinakraft.bsky.social @sedonamurphy.bsky.social @mattjones.bsky.social et al. identify extrachromosomal DNA(ecDNA)-interacting elements (EIEs) enriched for #TransposableElements in #ColorectalCancer. EIE 14 integrated within ecDNA acts as an enhancer to promote cancer fitness.
bit.ly/49iFC7C
Enhancer activation from transposable elements in extrachromosomal DNA - Nature Cell Biology
Kraft, Murphy, Jones et al. identify extrachromosomal DNA (ecDNA)-interacting elements (EIEs) enriched for transposable elements within ecDNA in colorectal cancer cells. They show that EIE 14 integrat...
bit.ly
November 16, 2025 at 8:29 AM
wenjuanma84.bsky.social
🚨Hiring a postdoc!

Are you interested in #evolutionarygenomics, #sexchromosomes, #transposableelements & #Sexspecific #recombination in 🐸🧬?

Join my lab @vubrussel.bsky.social
🔹 @fwovlaanderen.bsky.social funded up to 3y
🔹 Deadline 10/3/2026
🔹 Start ~1/6/2026

Apply 👉: jobs.vub.be/job/Elsene-P...
January 22, 2026 at 9:37 AM
mceccarelli.bsky.social
#TransposableElements and Homotypic Niches Drive Immune Dynamics and Resistance in #Melanoma Epigenetic-based #immunotherapy
www.biorxiv.org/content/10.1...
October 13, 2025 at 2:55 PM
raquelgarza.bsky.social
Major career news: I’ve been selected as a CRN Discovery Fellow by @asapresearch.parkinsonsroadmap.org! 🚀

The fellowship funds independently led, collaborative projects in #ParkinsonsDisease, meaning I get the opportunity to continue researching the role of #TransposableElements in #ageing and PD!
April 23, 2026 at 5:03 PM
crazychipkali.bsky.social
Terrific talk by @cedricfeschotte.bsky.social on his visit to our department at the University of Neuchâtel! #TE #transposableelements #genomics #genetics
March 14, 2025 at 1:46 PM
toheitka.bsky.social
So, many previously uncharacterized transcription factors in human

🧬are associated with genomic dark matter,

🧬at largely unique sites,

🧬bind within regions of closed chromatin,

🧬are enriched for #TransposableElements,

🧬bind via intrinsic sequence recognition

= 🕶“Dark TFs”🕶
downbythebayes.bsky.social Isaac Yellan @downbythebayes.bsky.social · Nov 15
(1/8) 🚀 Excited to share our findings on a large-scale ChIP-seq assay for 166 previously uncharacterized human transcription factors (TFs) and their roles in both regulatory regions, and more strikingly, the “dark matter” genome. 🌌 doi.org/10.1101/2024....
Extensive binding of uncharacterized human transcription factors to genomic dark matter
Most of the human genome is thought to be non-functional, and includes large segments often referred to as “dark matter” DNA. The genome also encodes hundreds of putative and poorly characterized tran...
doi.org
November 18, 2024 at 7:15 AM