The WorkflowHub registry has a global reach, with hundreds of research organisations involved, and more than 800 workflows registered. www.nature.com/articles/s41... #bioinformatics #FAIR
WorkflowHub: a registry for computational workflows - Scientific Data
Scientific Data - WorkflowHub: a registry for computational workflows
www.nature.com
May 24, 2025 at 12:02 PM
The WorkflowHub registry has a global reach, with hundreds of research organisations involved, and more than 800 workflows registered. www.nature.com/articles/s41... #bioinformatics #FAIR
🎉 Big news! Galaxy Training Network workflows are now automatically registered on WorkflowHub.
Easier discovery, citation, & direct Galaxy execution → boosting FAIR & accessible training!
training.galaxyproject.org/training-mat...
Easier discovery, citation, & direct Galaxy execution → boosting FAIR & accessible training!
training.galaxyproject.org/training-mat...
GTN is now integrated with WorkflowHub
Thanks to a collaborative effort between the teams at Galaxy Training Network (GTN), WorkflowHub, and Australian BioCommons, GTN workflows are now registered automatically with WorkflowHub. The existi...
training.galaxyproject.org
September 8, 2025 at 4:32 PM
🎉 Big news! Galaxy Training Network workflows are now automatically registered on WorkflowHub.
Easier discovery, citation, & direct Galaxy execution → boosting FAIR & accessible training!
training.galaxyproject.org/training-mat...
Easier discovery, citation, & direct Galaxy execution → boosting FAIR & accessible training!
training.galaxyproject.org/training-mat...
What I'm reading this week: WorkflowHub computational workflow registry, building a virtual cell with AI, bioinformatics for prioritizing causal variants, DL methods for nanopore variant calling, predicting gene expression, ...
https://blog.stephenturner.us/p/weekly-recap-dec-2024-part-1 🧬🖥️🧪
https://blog.stephenturner.us/p/weekly-recap-dec-2024-part-1 🧬🖥️🧪
Weekly Recap (Nov 2024, part 4)
WorkflowHub computational workflow registry, building a virtual cell with AI, bioinformatics for prioritizing causal variants, DL methods for nanopore variant calling, predicting gene expression, ...
blog.stephenturner.us
December 5, 2024 at 4:30 PM
What I'm reading this week: WorkflowHub computational workflow registry, building a virtual cell with AI, bioinformatics for prioritizing causal variants, DL methods for nanopore variant calling, predicting gene expression, ...
https://blog.stephenturner.us/p/weekly-recap-dec-2024-part-1 🧬🖥️🧪
https://blog.stephenturner.us/p/weekly-recap-dec-2024-part-1 🧬🖥️🧪
#ERGAReads | Scientific #data analysis should be scalable, transparent, and shareable - yet computational #workflows are often fragmented and hard to find. #WorkflowHub tackles this with a unified registry that promotes reproducibility, and #FAIRdata:
🔗 www.nature.com/articles/s41...
🔗 www.nature.com/articles/s41...
May 28, 2025 at 9:05 AM
#ERGAReads | Scientific #data analysis should be scalable, transparent, and shareable - yet computational #workflows are often fragmented and hard to find. #WorkflowHub tackles this with a unified registry that promotes reproducibility, and #FAIRdata:
🔗 www.nature.com/articles/s41...
🔗 www.nature.com/articles/s41...
New Autosubmit workflow with RO-Crate published on WorkflowHub by Pablo Goitia: “EC-Earth3 workflow with wrappers in MareNostrum 4” workflowhub.eu/workflows/1733 #opensource #autosubmit #workflow #sciworkflow #python #rocrate #ecearth
workflowhub.eu
June 17, 2025 at 12:04 PM
New Autosubmit workflow with RO-Crate published on WorkflowHub by Pablo Goitia: “EC-Earth3 workflow with wrappers in MareNostrum 4” workflowhub.eu/workflows/1733 #opensource #autosubmit #workflow #sciworkflow #python #rocrate #ecearth
Using the Galaxy infrastructure and workflows to teach de-novo genome assembly and annotation
https://galaxyproject.org/news/2025-05-19-bge-workshops/
##UseGalaxy ##GalaxyProject ##EOSC
https://galaxyproject.org/news/2025-05-19-bge-workshops/
##UseGalaxy ##GalaxyProject ##EOSC
May 22, 2025 at 10:51 PM
Using the Galaxy infrastructure and workflows to teach de-novo genome assembly and annotation
https://galaxyproject.org/news/2025-05-19-bge-workshops/
##UseGalaxy ##GalaxyProject ##EOSC
https://galaxyproject.org/news/2025-05-19-bge-workshops/
##UseGalaxy ##GalaxyProject ##EOSC
what about "Galaxy", "WorkflowHub" 🤔
February 27, 2025 at 8:26 AM
what about "Galaxy", "WorkflowHub" 🤔
💡In the first day of #BioMonWeek2026 we met some partners and talked about the future of biodiversity
➡️We start day 2️⃣ excited about session DT02 Data Workflows and Pipelines for WorkFlowHub starting at 11:30 🕐and featuring @gbif.org species occurrence cube.
Stay tuned for more updates! 👀
➡️We start day 2️⃣ excited about session DT02 Data Workflows and Pipelines for WorkFlowHub starting at 11:30 🕐and featuring @gbif.org species occurrence cube.
Stay tuned for more updates! 👀
May 6, 2026 at 7:48 AM
💡In the first day of #BioMonWeek2026 we met some partners and talked about the future of biodiversity
➡️We start day 2️⃣ excited about session DT02 Data Workflows and Pipelines for WorkFlowHub starting at 11:30 🕐and featuring @gbif.org species occurrence cube.
Stay tuned for more updates! 👀
➡️We start day 2️⃣ excited about session DT02 Data Workflows and Pipelines for WorkFlowHub starting at 11:30 🕐and featuring @gbif.org species occurrence cube.
Stay tuned for more updates! 👀
Thank you! We added @galaxyproject.bsky.social and WorkflowHub to the glossary ✅
February 27, 2025 at 4:30 PM
Thank you! We added @galaxyproject.bsky.social and WorkflowHub to the glossary ✅
#EuroScienceGateway ##egi ##elixir ##denbi ##nfdi ##workflowhub ##data ##ifremer ##OscarsFiesta ##DataTerra ##BMBF (2/2)
November 17, 2025 at 9:12 AM
#EuroScienceGateway ##egi ##elixir ##denbi ##nfdi ##workflowhub ##data ##ifremer ##OscarsFiesta ##DataTerra ##BMBF (2/2)
At BEeS 2025, ELIXIR-UK’s Carole Goble gave a keynote on FAIR workflows for biodiversity 🌱
She shared how tools like WorkflowHub help scientists reuse and scale complex analyses across ecosystems.
Full story:
🔗 elixiruknode.org/news/2025/fa...
#FAIRworkflows #Biodiversity #OpenScience #WorkflowHub
She shared how tools like WorkflowHub help scientists reuse and scale complex analyses across ecosystems.
Full story:
🔗 elixiruknode.org/news/2025/fa...
#FAIRworkflows #Biodiversity #OpenScience #WorkflowHub
July 7, 2025 at 11:31 AM
At BEeS 2025, ELIXIR-UK’s Carole Goble gave a keynote on FAIR workflows for biodiversity 🌱
She shared how tools like WorkflowHub help scientists reuse and scale complex analyses across ecosystems.
Full story:
🔗 elixiruknode.org/news/2025/fa...
#FAIRworkflows #Biodiversity #OpenScience #WorkflowHub
She shared how tools like WorkflowHub help scientists reuse and scale complex analyses across ecosystems.
Full story:
🔗 elixiruknode.org/news/2025/fa...
#FAIRworkflows #Biodiversity #OpenScience #WorkflowHub
From the RO-Crate blog: RO-Crate and WorkflowHub at the European Galaxy Days 2025
https://www.researchobject.org/ro-crate/blog/2025-10-09/ro-crate-at-european-galaxy-days-2025
##OpenScience ##ReproducibleResearch ##GalaxyProject ##ROCrate ##WorkflowHub ##Bioinformatics ##FAIRData ##ResearchTools (1/2)
https://www.researchobject.org/ro-crate/blog/2025-10-09/ro-crate-at-european-galaxy-days-2025
##OpenScience ##ReproducibleResearch ##GalaxyProject ##ROCrate ##WorkflowHub ##Bioinformatics ##FAIRData ##ResearchTools (1/2)
blog posts: RO-Crate and WorkflowHub at the European Galaxy Days 2025 | Research Object Crate (RO-Crate)
The European Galaxy Days took place from 1-3 October 2025 in Freiburg im Breisgau, Germany. Users, developers, teachers, and administrators of Galaxy in Europe gathered to discuss new developments in...
www.researchobject.org
October 14, 2025 at 8:46 AM
From the RO-Crate blog: RO-Crate and WorkflowHub at the European Galaxy Days 2025
https://www.researchobject.org/ro-crate/blog/2025-10-09/ro-crate-at-european-galaxy-days-2025
##OpenScience ##ReproducibleResearch ##GalaxyProject ##ROCrate ##WorkflowHub ##Bioinformatics ##FAIRData ##ResearchTools (1/2)
https://www.researchobject.org/ro-crate/blog/2025-10-09/ro-crate-at-european-galaxy-days-2025
##OpenScience ##ReproducibleResearch ##GalaxyProject ##ROCrate ##WorkflowHub ##Bioinformatics ##FAIRData ##ResearchTools (1/2)
The Destination Earth Climate Digital Twin workflow is now open source! It's available from Destination Earth's GitHub org, soon with RO-Crate and uploaded to WorkflowHub.
github.com/DestinE-Clim... & github.com/DestinE-Clim...
#OpenSource #workflow #SciWorkflows #HPC
github.com/DestinE-Clim... & github.com/DestinE-Clim...
#OpenSource #workflow #SciWorkflows #HPC
GitHub - DestinE-Climate-DT/Workflow: Development of the workflow in charge of evolving the ModelSV and periodically extracting the OutputSV, to produce the GSV, already projected to the observation space. This workflow, together with the one developed in DE_34080 (WP8) for the consumption of the GSV by the applications, will constitute the greater climate DT workflow.
Development of the workflow in charge of evolving the ModelSV and periodically extracting the OutputSV, to produce the GSV, already projected to the observation space. This workflow, together with ...
github.com
June 6, 2025 at 3:14 PM
The Destination Earth Climate Digital Twin workflow is now open source! It's available from Destination Earth's GitHub org, soon with RO-Crate and uploaded to WorkflowHub.
github.com/DestinE-Clim... & github.com/DestinE-Clim...
#OpenSource #workflow #SciWorkflows #HPC
github.com/DestinE-Clim... & github.com/DestinE-Clim...
#OpenSource #workflow #SciWorkflows #HPC
Very happy to announce that all @nf-co.re pipelines will now be automatically added to hashtag#WorkflowHub for greater visibility in the wider bioinformatics community🎉
Many thanks to the WorkflowHub team for building this scraping infrastructure for us 🤝🏻
workflowhub.eu/projects/15/...
Many thanks to the WorkflowHub team for building this scraping infrastructure for us 🤝🏻
workflowhub.eu/projects/15/...
nf-core - Workflows
workflowhub.eu
June 14, 2024 at 12:55 PM
Very happy to announce that all @nf-co.re pipelines will now be automatically added to hashtag#WorkflowHub for greater visibility in the wider bioinformatics community🎉
Many thanks to the WorkflowHub team for building this scraping infrastructure for us 🤝🏻
workflowhub.eu/projects/15/...
Many thanks to the WorkflowHub team for building this scraping infrastructure for us 🤝🏻
workflowhub.eu/projects/15/...
🎁 8 Workflows across Europe
Our Head of Node, Carole Goble, represented ELIXIR-UK at Workflow Community Talks, BEeS 2025, CoRDI 2025 and more throughout the year
🔗 elixiruknode.org/news/2025/wo...
#workflows #researchinfrastructure
Our Head of Node, Carole Goble, represented ELIXIR-UK at Workflow Community Talks, BEeS 2025, CoRDI 2025 and more throughout the year
🔗 elixiruknode.org/news/2025/wo...
#workflows #researchinfrastructure
Carole Goble presents WorkflowHub at Workflow Community talks
Carole Goble joined Johan Gustafsson for a Workflow Community Talk to showcase WorkflowHub, supporting FAIR sharing and reuse of over 1,200 registered compu ...
elixiruknode.org
December 17, 2025 at 12:39 PM
🎁 8 Workflows across Europe
Our Head of Node, Carole Goble, represented ELIXIR-UK at Workflow Community Talks, BEeS 2025, CoRDI 2025 and more throughout the year
🔗 elixiruknode.org/news/2025/wo...
#workflows #researchinfrastructure
Our Head of Node, Carole Goble, represented ELIXIR-UK at Workflow Community Talks, BEeS 2025, CoRDI 2025 and more throughout the year
🔗 elixiruknode.org/news/2025/wo...
#workflows #researchinfrastructure
Looking to level up your data analysis skills? 💻🧬
The @galaxyproject.bsky.social Training Network now features 500+ free tutorials (with 37 contributed by our very own BioCommons team!). Plus, all workflows are now integrated with WorkflowHub 🔗 buff.ly/R2oSQoL
#Bioinformatics #NCRIS
The @galaxyproject.bsky.social Training Network now features 500+ free tutorials (with 37 contributed by our very own BioCommons team!). Plus, all workflows are now integrated with WorkflowHub 🔗 buff.ly/R2oSQoL
#Bioinformatics #NCRIS
Contributing to open and accessible training with 500+ bioinformatics resources — Australian BioCommons
The Galaxy Training Network offers tutorials covering everything from genomics to machine learning. These self-paced resources combine videos and worked examples, allowing researchers to master…
buff.ly
March 12, 2026 at 3:30 AM
Looking to level up your data analysis skills? 💻🧬
The @galaxyproject.bsky.social Training Network now features 500+ free tutorials (with 37 contributed by our very own BioCommons team!). Plus, all workflows are now integrated with WorkflowHub 🔗 buff.ly/R2oSQoL
#Bioinformatics #NCRIS
The @galaxyproject.bsky.social Training Network now features 500+ free tutorials (with 37 contributed by our very own BioCommons team!). Plus, all workflows are now integrated with WorkflowHub 🔗 buff.ly/R2oSQoL
#Bioinformatics #NCRIS
Meet our BEeS2025 Speakers! 🎊
@carolegoble.bsky.social is Full Professor of Computer Science at @uniofmanchester.bsky.social, Joint Head of @elixiruknode.org, and founder of @softwaresaved.bsky.social
We can't wait to learn from her experience!
Join us to find out more: bit.ly/4m7lQ2I
@carolegoble.bsky.social is Full Professor of Computer Science at @uniofmanchester.bsky.social, Joint Head of @elixiruknode.org, and founder of @softwaresaved.bsky.social
We can't wait to learn from her experience!
Join us to find out more: bit.ly/4m7lQ2I
May 8, 2025 at 2:39 PM
Meet our BEeS2025 Speakers! 🎊
@carolegoble.bsky.social is Full Professor of Computer Science at @uniofmanchester.bsky.social, Joint Head of @elixiruknode.org, and founder of @softwaresaved.bsky.social
We can't wait to learn from her experience!
Join us to find out more: bit.ly/4m7lQ2I
@carolegoble.bsky.social is Full Professor of Computer Science at @uniofmanchester.bsky.social, Joint Head of @elixiruknode.org, and founder of @softwaresaved.bsky.social
We can't wait to learn from her experience!
Join us to find out more: bit.ly/4m7lQ2I
The European Galaxy Days took place in Germany. Users, developers, teachers, and administrators of Galaxy in Europe gathered to discuss new developments in research, the @galaxyproject.bsky.social platform and community.
The @esciencelab.org.uk was involved: www.researchobject.org/ro-crate/blo...
The @esciencelab.org.uk was involved: www.researchobject.org/ro-crate/blo...
blog posts: RO-Crate and WorkflowHub at the European Galaxy Days 2025 | Research Object Crate (RO-Crate)
The European Galaxy Days took place from 1-3 October 2025 in Freiburg im Breisgau, Germany. Users, developers, teachers, and administrators of Galaxy in Europe gathered to discuss new developments in....
www.researchobject.org
October 9, 2025 at 12:39 PM
The European Galaxy Days took place in Germany. Users, developers, teachers, and administrators of Galaxy in Europe gathered to discuss new developments in research, the @galaxyproject.bsky.social platform and community.
The @esciencelab.org.uk was involved: www.researchobject.org/ro-crate/blo...
The @esciencelab.org.uk was involved: www.researchobject.org/ro-crate/blo...
With a few HTML meta tags (or server HTTP headers) it could be made compatible with signposting.org. And with very few changes it could be added as a language in WorkflowHub - I did that process some months ago for Autosubmit, and it was really simple. Maybe in the future?
Signposting the Scholarly Web
signposting.org
March 24, 2025 at 9:43 PM
With a few HTML meta tags (or server HTTP headers) it could be made compatible with signposting.org. And with very few changes it could be added as a language in WorkflowHub - I did that process some months ago for Autosubmit, and it was really simple. Maybe in the future?
🔦 Spotlight on the Data Management and Mass Monitoring themes at #BioMonWeek26!
Submit an abstract by 18 March and bring your work to the European stage! Explore the full programme:🔗 www.biomonweek.eu
@biodiversa.eu, #AllianceforNature, @bioagora.eu, GBIF, MARCO-BOLO project
Submit an abstract by 18 March and bring your work to the European stage! Explore the full programme:🔗 www.biomonweek.eu
@biodiversa.eu, #AllianceforNature, @bioagora.eu, GBIF, MARCO-BOLO project
March 13, 2026 at 9:15 AM
🔦 Spotlight on the Data Management and Mass Monitoring themes at #BioMonWeek26!
Submit an abstract by 18 March and bring your work to the European stage! Explore the full programme:🔗 www.biomonweek.eu
@biodiversa.eu, #AllianceforNature, @bioagora.eu, GBIF, MARCO-BOLO project
Submit an abstract by 18 March and bring your work to the European stage! Explore the full programme:🔗 www.biomonweek.eu
@biodiversa.eu, #AllianceforNature, @bioagora.eu, GBIF, MARCO-BOLO project
Glycomics analysis is often limited by a lack of reproducible workflows.
To address this, GlyCombo (Protea Glycosciences) is now live on #GalaxyAustralia. This project turns a CLI tool into an open browser workflow on WorkflowHub.
Read more: www.biocommons.org.au/news/glycombo
To address this, GlyCombo (Protea Glycosciences) is now live on #GalaxyAustralia. This project turns a CLI tool into an open browser workflow on WorkflowHub.
Read more: www.biocommons.org.au/news/glycombo
GlyCombo: the first dedicated glycomics workflow on Galaxy — Australian BioCommons
GlyCombo is now live on Galaxy Australia as the platform's first dedicated glycomics software tool. This high-throughput workflow, developed by Protea Glycosciences, offers researchers a streamlined, reproducible way to automate glycan identification from complex mass spectrometry data in just a few
www.biocommons.org.au
May 27, 2026 at 1:57 AM
Glycomics analysis is often limited by a lack of reproducible workflows.
To address this, GlyCombo (Protea Glycosciences) is now live on #GalaxyAustralia. This project turns a CLI tool into an open browser workflow on WorkflowHub.
Read more: www.biocommons.org.au/news/glycombo
To address this, GlyCombo (Protea Glycosciences) is now live on #GalaxyAustralia. This project turns a CLI tool into an open browser workflow on WorkflowHub.
Read more: www.biocommons.org.au/news/glycombo
https://zenodo.org/records/15094824
https://zenodo.org/records/10728922
##EGD2025 ##research ##eurosciencegateway ##galaxyproject ##reusable_research ##eosc ##fair ##open_science (2/2)
https://zenodo.org/records/10728922
##EGD2025 ##research ##eurosciencegateway ##galaxyproject ##reusable_research ##eosc ##fair ##open_science (2/2)
EuroScienceGateway MS3: Initial EuroScienceGateway workflows registered
WorkflowHub is a registry of computational workflows, provided as a EOSC Service by ELIXIR-UK, and used by over 200 different research projects, institutions and virtual collaborations. For this milestone of EuroScienceGateway (ESG), the project has developed an onboarding guide for WorkflowHub and registered in WorkflowHub the initial ESG workflows that have been developed and maintained by the project.
zenodo.org
October 3, 2025 at 6:50 PM
https://zenodo.org/records/15094824
https://zenodo.org/records/10728922
##EGD2025 ##research ##eurosciencegateway ##galaxyproject ##reusable_research ##eosc ##fair ##open_science (2/2)
https://zenodo.org/records/10728922
##EGD2025 ##research ##eurosciencegateway ##galaxyproject ##reusable_research ##eosc ##fair ##open_science (2/2)
🌐 The EuroScienceGateway's forum gathered experts to discuss the importance of computational workflows in research. With over 350 workflow management systems, these workflows are vital for data-driven science. Exciting steps ahead for workflow visibility!
galaxyproject.org/news/2024-08...
galaxyproject.org/news/2024-08...
WorkflowHub Publishers and Journal Forum
Meeting Summary from EuroScienceGateway's WorkflowHub Publishers and Journal Forum
galaxyproject.org
August 5, 2024 at 5:15 PM
🌐 The EuroScienceGateway's forum gathered experts to discuss the importance of computational workflows in research. With over 350 workflow management systems, these workflows are vital for data-driven science. Exciting steps ahead for workflow visibility!
galaxyproject.org/news/2024-08...
galaxyproject.org/news/2024-08...
@denbi.bsky.social will support the @elixir-europe.org
Tools Platform and Single Cell #Omics: 'Bring Your #Workflow' to WorkflowHub workshop (Online, 13 May, 11:30-13:00 CEST). For more information see: www.denbi.de/training-cou...
Tools Platform and Single Cell #Omics: 'Bring Your #Workflow' to WorkflowHub workshop (Online, 13 May, 11:30-13:00 CEST). For more information see: www.denbi.de/training-cou...
May 8, 2025 at 8:01 AM
@denbi.bsky.social will support the @elixir-europe.org
Tools Platform and Single Cell #Omics: 'Bring Your #Workflow' to WorkflowHub workshop (Online, 13 May, 11:30-13:00 CEST). For more information see: www.denbi.de/training-cou...
Tools Platform and Single Cell #Omics: 'Bring Your #Workflow' to WorkflowHub workshop (Online, 13 May, 11:30-13:00 CEST). For more information see: www.denbi.de/training-cou...