resolveS infers RNA-seq library strandedness genome-independently using universal rRNA alignments, classifying 1,091 benchmark libraries within seconds under 0.5 GiB memory.
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0020
#RNAseq #Bioinformatics #QualityControl
resolveS infers RNA-seq library strandedness genome-independently using universal rRNA alignments, classifying 1,091 benchmark libraries within seconds under 0.5 GiB memory.
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0020
#RNAseq #Bioinformatics #QualityControl
Simple Genome Hub: a cross-platform local platform managing genome-annotation units with plugin workflows spanning BLAST, expression, and synteny analysis, demonstrated on pineapple germplasm.
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0021
#Genome #Bioinformatics
Simple Genome Hub: a cross-platform local platform managing genome-annotation units with plugin workflows spanning BLAST, expression, and synteny analysis, demonstrated on pineapple germplasm.
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0021
#Genome #Bioinformatics
344 nuclear genes resolve four clades of Asian Caryodaphnopsis (Lauraceae) and unveil C. minutiflora sp. nov. from low-altitude karst in China.
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0017
#Lauraceae #Phylogenomics #NewSpecies
344 nuclear genes resolve four clades of Asian Caryodaphnopsis (Lauraceae) and unveil C. minutiflora sp. nov. from low-altitude karst in China.
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0017
#Lauraceae #Phylogenomics #NewSpecies
LIMBO: a browser-based, lightweight modular bioinformatics orchestrator with automated environment setup, visualization, and AI-assisted dialogue.
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0019
#Bioinformatics #WorkflowManagement #AITools
LIMBO: a browser-based, lightweight modular bioinformatics orchestrator with automated environment setup, visualization, and AI-assisted dialogue.
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0019
#Bioinformatics #WorkflowManagement #AITools
LLM-assisted Rust for bioinformatics: workflows and boundaries for memory-safe, high-throughput sequencing software without garbage collection.
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0018
#Rust #Bioinformatics #LLM #SoftwareEngineering
LLM-assisted Rust for bioinformatics: workflows and boundaries for memory-safe, high-throughput sequencing software without garbage collection.
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0018
#Rust #Bioinformatics #LLM #SoftwareEngineering
AI-powered spatial multi-omics decodes HCC immune microenvironment, revealing Tumor Immune Barrier and glycolytic zonation driving T-cell exhaustion for precision immunotherapy stratification.
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0016
#SpatialOmics #HCC #Tumor
AI-powered spatial multi-omics decodes HCC immune microenvironment, revealing Tumor Immune Barrier and glycolytic zonation driving T-cell exhaustion for precision immunotherapy stratification.
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0016
#SpatialOmics #HCC #Tumor
Gapless telomere-to-telomere genome of Cnidium monnieri (1.13 Gb, 10 chromosomes) reveals lineage-specific interchromosomal rearrangements and coumarin biosynthesis potential in Apiaceae.
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0014
#GaplessGenome #Apiaceae
Gapless telomere-to-telomere genome of Cnidium monnieri (1.13 Gb, 10 chromosomes) reveals lineage-specific interchromosomal rearrangements and coumarin biosynthesis potential in Apiaceae.
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0014
#GaplessGenome #Apiaceae
>GOOD WORK GCOMM, IT'S LIKE FOUNDING DAY UP HERE
>ESTIMATE SIXTEEN OVER THREE UNTIL NEXT SPOOL UP
>HOLD ON THAT GCOMM, WE'LL TAKE IT FROM HERE
>ACKNOWLEDGED FCOMM, HOLDING
>GOOD WORK GCOMM, IT'S LIKE FOUNDING DAY UP HERE
>ESTIMATE SIXTEEN OVER THREE UNTIL NEXT SPOOL UP
>HOLD ON THAT GCOMM, WE'LL TAKE IT FROM HERE
>ACKNOWLEDGED FCOMM, HOLDING
>ACKNOWLEDGED GCOMM, WE SEE THEM TOO
>READY AT YOUR ORDER, FCOMM.
>SPOOL UP THE JACKHAMMERS AND STAND BY. WE DON'T HAVE MUCH OF A WINDOW HERE
>WE'LL MAKE IT COUNT, FCOMM
>ACKNOWLEDGED GCOMM, WE SEE THEM TOO
>READY AT YOUR ORDER, FCOMM.
>SPOOL UP THE JACKHAMMERS AND STAND BY. WE DON'T HAVE MUCH OF A WINDOW HERE
>WE'LL MAKE IT COUNT, FCOMM
Network Owner: Route Object
Network: GCOMM-BD
Location: #Bangladesh
IP: 103.26.137.32
Network Owner: Route Object
Network: GCOMM-BD
Location: #Bangladesh
IP: 103.26.137.32
eGPS-oneBuilder integrates multi-method phylogenetic inference with Foldseek-based protein structure clustering, enabling quantitative tree comparison for gene-family evolution.
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0015
#Phylogenetics #ProteinStructure
eGPS-oneBuilder integrates multi-method phylogenetic inference with Foldseek-based protein structure clustering, enabling quantitative tree comparison for gene-family evolution.
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0015
#Phylogenetics #ProteinStructure
Chromosome-level genomes now cover 52 Bombus species across all 15 subgenera; chromosomal rearrangements and regulatory evolution underlie social transitions.
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0012
#BumblebeeGenomics #Bombus #PollinatorDecline
Chromosome-level genomes now cover 52 Bombus species across all 15 subgenera; chromosomal rearrangements and regulatory evolution underlie social transitions.
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0012
#BumblebeeGenomics #Bombus #PollinatorDecline
Genomic mating outperforms genomic selection in sea cucumber breeding—'maxbv' increases genetic gain 68.99% over GBLUP after 20 generations while limiting inbreeding
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0013
#GenomicSelection #Aquaculture #SeaCucumber
Genomic mating outperforms genomic selection in sea cucumber breeding—'maxbv' increases genetic gain 68.99% over GBLUP after 20 generations while limiting inbreeding
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0013
#GenomicSelection #Aquaculture #SeaCucumber
Deep learning on seedling transcriptome data predicts adult phenotypes in chrysanthemum—validated in rice, enabling gene chip-based breeding for complex-genome crops.
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0011
#DeepLearning #PlantGenomics #Transcriptomics
Deep learning on seedling transcriptome data predicts adult phenotypes in chrysanthemum—validated in rice, enabling gene chip-based breeding for complex-genome crops.
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0011
#DeepLearning #PlantGenomics #Transcriptomics
Six LLMs evaluated for extracting enzyme data from literature: top models achieve 95-99% accuracy under 10 minutes, enabling new automated ptol workflow for microbiology research.
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0010
#LLMs #Microbiology #AIinScience
Six LLMs evaluated for extracting enzyme data from literature: top models achieve 95-99% accuracy under 10 minutes, enabling new automated ptol workflow for microbiology research.
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0010
#LLMs #Microbiology #AIinScience
New study compares 14 chloroplast genomes across Apocynoideae subfamily, revealing lineage-specific codon usage patterns and non-monophyletic evolution with Asclepiadoideae nested within.
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0009
#Chloroplast #Phylogenomics
New study compares 14 chloroplast genomes across Apocynoideae subfamily, revealing lineage-specific codon usage patterns and non-monophyletic evolution with Asclepiadoideae nested within.
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0009
#Chloroplast #Phylogenomics
Pangenome analysis of 22 tea cultivars identifies 1,699 WRKY members with tissue-specific expression patterns, providing molecular targets for marker-assisted tea breeding.
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0008
#WRKY #Pangenome #TeaPlant
Pangenome analysis of 22 tea cultivars identifies 1,699 WRKY members with tissue-specific expression patterns, providing molecular targets for marker-assisted tea breeding.
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0008
#WRKY #Pangenome #TeaPlant
Domestication of sunflower unintentionally eliminated beneficial stress-tolerance alleles. Recovering ancestral variants could improve abiotic stress resilience in modern cultivars.
Detail: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0006
#Sunflower #Domestication #CropGenomics
Domestication of sunflower unintentionally eliminated beneficial stress-tolerance alleles. Recovering ancestral variants could improve abiotic stress resilience in modern cultivars.
Detail: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0006
#Sunflower #Domestication #CropGenomics
First chromosome-level genome of Brachymystax lenok tsinlingensis reveals population decline patterns and identifies the Zhangxian lineage as a priority for conservation.
Detail: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0007
#ConservationGenomics #FishGenome #Biodiversity
First chromosome-level genome of Brachymystax lenok tsinlingensis reveals population decline patterns and identifies the Zhangxian lineage as a priority for conservation.
Detail: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0007
#ConservationGenomics #FishGenome #Biodiversity
AI agents are becoming "digital biologists"—automating multi-omics analysis, experiment design & drug discovery.
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0005
#becomedigital #agent #analysis
AI agents are becoming "digital biologists"—automating multi-omics analysis, experiment design & drug discovery.
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0005
#becomedigital #agent #analysis
R-loop mapping methods reviewed: antibody-based, in situ capture & nuclease strategies each reveal unique genomic insights 🔬🧬
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0004
#method #capture #strategy
R-loop mapping methods reviewed: antibody-based, in situ capture & nuclease strategies each reveal unique genomic insights 🔬🧬
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0004
#method #capture #strategy
Foxglove organellar genomes decoded! Plastomes stay frozen in time while mitochondrial DNA shuffles dramatically.
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0003
#plastomes #speed #mitochondrialdna
Foxglove organellar genomes decoded! Plastomes stay frozen in time while mitochondrial DNA shuffles dramatically.
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0003
#plastomes #speed #mitochondrialdna
Comprehensive eQTL atlas maps gene regulation across tissues in bread wheat, bridging genetic variation to agronomic traits 🌾🧬
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0002
#geneticvariation #tissue #bridge
Comprehensive eQTL atlas maps gene regulation across tissues in bread wheat, bridging genetic variation to agronomic traits 🌾🧬
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0002
#geneticvariation #tissue #bridge
New deep learning framework RF2-PPI integrates genomic MSAs and AlphaFold structures to predict human protein interactions at scale 🧬🤖
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0001
#deeplearning #education #learning #structures
New deep learning framework RF2-PPI integrates genomic MSAs and AlphaFold structures to predict human protein interactions at scale 🧬🤖
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0026-0001
#deeplearning #education #learning #structures
Genomics Communications celebrates 2 years! 32 articles from 11 countries, fast reviews, and growing impact. Join us in advancing genomics research! 🌐🧬
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0025-0026
#growingimpact #genomics #communications
Genomics Communications celebrates 2 years! 32 articles from 11 countries, fast reviews, and growing impact. Join us in advancing genomics research! 🌐🧬
Details: https://www.maxapress.com/article/doi/10.48130/gcomm-0025-0026
#growingimpact #genomics #communications