#ideotypes
Interesting discussion on #root #ideotypes and #plasticity from the #Root2Res project.
youtu.be/_VlmB0sq8Ds?...
Exploring Root Ideotypes and Plasticity: Strategies for Resilient Agriculture
YouTube video by Root2Res
youtu.be
May 22, 2025 at 1:07 PM
🌾🌱 SPECIAL ISSUE REVIEW 🌱🌾

Heterosis is a complex biological phenomenon with unrealised potential for utilisation in large-scale crop production systems, and this review examines current knowledge in the context of wheat - Revell et al.

🔗 doi.org/10.1093/jxb/...

#PlantScience 🧪
May 10, 2026 at 5:00 AM
Some very nice #OpenAccess #grapevine #reviews in that @jxbotany.bsky.social issue, on rootstock ideotypes, #ClimateChange, and grapevine–arbuscular mycorrhizal fungi interactions!
October 12, 2025 at 12:55 PM
There’s lots of activity in Root2Res in planning the experiments in all crop species to validate the ideotypes described the project and screen large populations for root traits. Watch this space for findings of these experiments.
February 19, 2025 at 1:14 PM
Towards Super-High Yielding #Rice: A Novel Approach to Optimize Grain Filling
📰 Story: https://buff.ly/3uVcktx via @botany.one
🔬 Research: https://buff.ly/3P8cJ3D
Towards Super-High Yielding Rice: A Novel Approach to Optimize Grain Filling
A novel systems model, in conjunction with genetic algorithms, identify ideotypes with high yield potential.
botany.one
December 16, 2024 at 7:49 PM
Stacking superior haplotypes to breed high-density planting-tolerant maize ideotypes #spotlight #MolecularPlant cell.com/molecular-pl...
May 11, 2026 at 6:28 AM
🌾🧬Precision breeding uses deep learning to predict variant effects. Three key applications: introgressing distant genes, purging harmful mutations, and designing new plant ideotypes.

Moving beyond evolutionary constraints. #plantscience @natrevgenet.nature.com www.nature.com/articles/s41...
Translating functional molecular knowledge into crop-breeding success - Nature Reviews Genetics
In this Perspective, Ramstein and colleagues discuss the use of emerging machine learning tools for function-informed prioritization of variants for plant breeding; they outline future applications in...
www.nature.com
June 16, 2026 at 4:35 AM
We are also looking for 3-year #postdoc to work on the in silico prediction of root ideotypes for drought resistance across Europe. The Postdoc will be co-supervised by Dr. Pierre Martre, from the INRAE

🧪🌱💡 #joboffer #plantscijob #phd #Drooght004

Job offer here www.dropbox.com/scl/fi/6oww2...
April 23, 2025 at 3:02 PM
🌾🧬Precision breeding uses functional molecular knowledge & DL to predict variant effects. Three key applications: introgressing distant genes, purging harmful mutations, and designing new plant ideotypes.

Moving beyond evolutionary constraints. @natrevgenet.nature.com www.nature.com/articles/s41...
Translating functional molecular knowledge into crop-breeding success - Nature Reviews Genetics
In this Perspective, Ramstein and colleagues discuss the use of emerging machine learning tools for function-informed prioritization of variants for plant breeding; they outline future applications in...
www.nature.com
June 13, 2026 at 6:25 AM
🌾🧬From historical breeding to precision breeding. Sequence based deep learning predicts variant effects. Breeders can prioritize variants for selection or editing.

Introgress distant genes. Purging mutations. Design new ideotypes #plantscience @natrevgenet.nature.com
www.nature.com/articles/s41...
Translating functional molecular knowledge into crop-breeding success - Nature Reviews Genetics
In this Perspective, Ramstein and colleagues discuss the use of emerging machine learning tools for function-informed prioritization of variants for plant breeding; they outline future applications in...
www.nature.com
May 27, 2026 at 9:22 AM
🌿🌡️ SPECIAL ISSUE RESEARCH 🌡️🌿

Millan et al. identify grapevine architectural morphotypes that simultaneously optimize carbon assimilation and water use efficiency and reduce leaf temperature under conditions of water deficit and heat stress 🍇

🔗 doi.org/10.1093/jxb/...

#PlantScience 🧪
August 26, 2025 at 11:16 AM
Heading to Morocco this weekend for the #root2res AGM. I'm looking forward to a few days of sunshine, lots of discussions about #roots and #ideotypes and catching up with the wonderful people in the consortium #inperson #makingprogress #rhizosphere #barley #beans #potato #PlantScience
November 9, 2024 at 9:46 AM
Identifying #maize architectural ideotypes through 3D structural #model validated in the field

www.sciencedirect.com/science/arti... via Computers and Electronics in Agriculture #PlantScience
www.sciencedirect.com
March 10, 2025 at 3:10 PM
REVIEW: "Root system ideotypes: what is the potential for breeding drought-tolerant grapevine rootstocks?" 🍇

They summarized nicely the #FSPM challenges of mixing different scales of time and space.

📜 Bernardo et al., 2025 doi.org/10.1093/jxb/...
@jxbotany.bsky.social

#PlantSciences 🧪
February 7, 2025 at 9:39 AM
🌱 Taylor S. Nelsen, Joshua Hegarty and Mark Lundy discussed how NDVI-based ideotypes help identify yield-stable wheat genotypes under stress. This could be a cost-effective tool for precision breeding in variable environments.
▶️ www.sciencedirect.com/science/arti...
#AgTech #WheatBreeding
January 31, 2025 at 5:27 PM
🌱💧 SPECIAL ISSUE REVIEW 🍇🔬

Current knowledge of root trait syndromes contributing to drought tolerance provides essential information to conceive grapevine rootstock ideotypes for breeding programs.

📝 Bernardo et al.

🔗 doi.org/10.1093/jxb/...

#PlantScience 🧪
August 12, 2025 at 11:28 AM
Thanks Alex. 🧪I've learned "Vaccinology" is a very, very broad field... lots of bacteria have sialic acid (siglets) as a kinda self/non-self stealth technology... not to get lost in all the Vax terminology, but I think a lot of mouse monoclonal antibodies to siglets are probably "ideotypes" ?
January 24, 2026 at 11:22 PM
Bravo à Mame Sokhatil Ndoye qui a brillamment soutenu sa thèse sur le développement d'un modèle structure fonction de système racinaire de mil et son utilisation pour proposer des idéotypes adaptés aux sols sahéliens!
senego.com/securite-ali...
Sécurité alimentaire : Vers un mil Souna plus adapté aux sols sahéliens pauvres en phosphore
Une nouvelle thèse vient d’être soutenue avec brio à l’UCAD sur le mil, une culture céréalière clé pour la sécurité alimentaire et nutritionnelle au Sahel. Il s’agit de la thèse de Madame Mame Sokhati...
senego.com
July 30, 2025 at 4:58 PM
Phylogenetically diverse wild plant species use common biochemical strategies to thrive in the Atacama Desert
The best ideotypes are under mounting pressure due to increased aridity in many parts of the world. Understanding the conserved molecular mechanisms that evolve in wild plant species adapted to harsh environments is crucial in developing new strategies for sustainable agriculture. Yet our knowledge of such mechanisms in wild species is scant, particularly in extreme environments. We performed metabolic pathway reconstruction using transcriptome information from 32 Atacama plant species and phylogenetically related plant species that do not live in Atacama (Sister species). We analyzed pathway and reaction enrichment to understand the biochemical commonalities and differences of wild Atacama plant species. To gain insights into the mechanisms that ensure plant survival, we compared expressed gene isoform numbers and gene expression patterns between the annotated biochemical reactions from 32 Atacama and Sister species. We found significant biochemical convergences in primary and secondary metabolism characterized by reactions enriched in at least 50% of the Atacama species across major plant phylogenetic lineages. Analysis of the annotation indicated potential advantages against drought, salinity, high solar irradiance, and nitrogen starvation. These findings suggest that the adaptation in the Atacama Desert may result in part from shared genetic legacies governing the expression of key metabolic pathways to face harsh environmental conditions. Enriched reactions corresponded to ubiquitous compounds common to extreme and agronomic species and were congruent with our previous metabolomic analyses in these Atacama species. Hence, genes underlying these adaptive traits offer promising candidates for improving abiotic stress resilience in crop species. ### Competing Interest Statement The authors have declared no competing interest. * ORA : over-representation analysis PSGs : positively selected genes
www.biorxiv.org
May 21, 2024 at 2:30 PM
♻️Integrating stay-green and PIN-FORMED genes: PIN-FORMED genes as potential targets for designing climate-resilient cereal ideotypes by Albert Chern Sun Wong and co-authors

Full #openaccess
👉 bit.ly/3s2XoZ1

#Botany #PlantScience
April 29, 2024 at 12:08 PM
The team has been busy analysing data and preparing samples for analysis to help interpret Root2Res findings and help develop our root phenotyping toolbox and identifying ideotypes to test in the field.
January 22, 2025 at 8:22 AM
How important is the intra-regional soil heterogeneity for the design of future stress-avoidant wheat ideotypes? A modeling study in central France https://www.biorxiv.org/content/10.64898/2026.02.11.705307v1
February 13, 2026 at 5:01 AM
How important is the intra-regional soil heterogeneity for the design of future stress-avoidant wheat ideotypes? A modeling study in central France https://www.biorxiv.org/content/10.64898/2026.02.11.705307v1
February 13, 2026 at 5:01 AM