I say this often but I miss more constructive social media like forums, where knowledgebases could be established.
with ephemeral social media like bsky or whatever, threads get forgotten so fast, even amazing ones by industry pros.
we need a big artist forum
with ephemeral social media like bsky or whatever, threads get forgotten so fast, even amazing ones by industry pros.
we need a big artist forum
March 12, 2025 at 5:30 PM
I say this often but I miss more constructive social media like forums, where knowledgebases could be established.
with ephemeral social media like bsky or whatever, threads get forgotten so fast, even amazing ones by industry pros.
we need a big artist forum
with ephemeral social media like bsky or whatever, threads get forgotten so fast, even amazing ones by industry pros.
we need a big artist forum
I think AI is going to eventually tank in the longterm, but...
the only real way to combat this is single-interest communities. Forums, user comms, etc, with a barrier to entry. They become trustable knowledgebases. It's really the only way forward is to return to what worked best the first time
the only real way to combat this is single-interest communities. Forums, user comms, etc, with a barrier to entry. They become trustable knowledgebases. It's really the only way forward is to return to what worked best the first time
June 24, 2025 at 6:24 PM
I think AI is going to eventually tank in the longterm, but...
the only real way to combat this is single-interest communities. Forums, user comms, etc, with a barrier to entry. They become trustable knowledgebases. It's really the only way forward is to return to what worked best the first time
the only real way to combat this is single-interest communities. Forums, user comms, etc, with a barrier to entry. They become trustable knowledgebases. It's really the only way forward is to return to what worked best the first time
🎉 Congratulations to Bgee and the two complementary SwissOrthology knowledgebases, OMA and OrthoDB, for being selected as ELIXIR Core Data Resources! See more👇
@bgee.org @marcrr.bsky.social @dessimoz.bsky.social @elixir-europe.org
@bgee.org @marcrr.bsky.social @dessimoz.bsky.social @elixir-europe.org
Three further SIB knowledgebases gain prestigious European recognition
A total of eight expertly curated knowledgebases developed by SIB scientists are now designated as ELIXIR Core Data Resources (CDRs) – with the three new additions representing half of those sel...
www.sib.swiss
January 12, 2026 at 10:26 AM
🎉 Congratulations to Bgee and the two complementary SwissOrthology knowledgebases, OMA and OrthoDB, for being selected as ELIXIR Core Data Resources! See more👇
@bgee.org @marcrr.bsky.social @dessimoz.bsky.social @elixir-europe.org
@bgee.org @marcrr.bsky.social @dessimoz.bsky.social @elixir-europe.org
Empowering biological knowledgebases: advances in human-in-the-loop AI-driven literature curation url: academic.oup.com/bioinformati... @elixiruknode.org @biocurator.bsky.social
Empowering biological knowledgebases: advances in human-in-the-loop AI-driven literature curation
Abstract. Biological knowledgebases facilitate discovery across the life sciences by structuring experimental findings into human-readable and computable f
academic.oup.com
February 16, 2026 at 8:18 AM
Empowering biological knowledgebases: advances in human-in-the-loop AI-driven literature curation url: academic.oup.com/bioinformati... @elixiruknode.org @biocurator.bsky.social
From the initial vision of the #SemanticWeb to agentic data infra, AI data catalogues, scalable #knowledgegraphs, language as data, and #Wikis as #secondbrain #AI #knowledgebases.
Also: @smntc.bsky.social and Yaron Koren on #MediaWiki, #Wikidata, #ECHOLOT, #NeoWiki.
Tune in: go.dobriy.ai/btb
Also: @smntc.bsky.social and Yaron Koren on #MediaWiki, #Wikidata, #ECHOLOT, #NeoWiki.
Tune in: go.dobriy.ai/btb
June 6, 2026 at 6:34 AM
From the initial vision of the #SemanticWeb to agentic data infra, AI data catalogues, scalable #knowledgegraphs, language as data, and #Wikis as #secondbrain #AI #knowledgebases.
Also: @smntc.bsky.social and Yaron Koren on #MediaWiki, #Wikidata, #ECHOLOT, #NeoWiki.
Tune in: go.dobriy.ai/btb
Also: @smntc.bsky.social and Yaron Koren on #MediaWiki, #Wikidata, #ECHOLOT, #NeoWiki.
Tune in: go.dobriy.ai/btb
Empowering biological knowledgebases: advances in human-in-the-loop AI-driven literature curation academic.oup.com/bioinformati...
March 4, 2026 at 5:03 PM
Empowering biological knowledgebases: advances in human-in-the-loop AI-driven literature curation academic.oup.com/bioinformati...
Many of these have multiple definitions depending on context. This is wholesale stupidity compounding into completely devastating destruction of our intelligence knowledgebases.
Not exaggerating when I say I would like a personal, handwritten apology from every pundit who barfed out a dozen "the left wants to change the way you talk!" op-eds based on non-mandatory guidelines in obscure PDFs.
2. A memo distributed by NSA leadership to its staff says that on February 10, all NSA websites and internal network pages that contain banned words will be deleted.
This is the list of 27 banned words distributed to NSA staff:
This is the list of 27 banned words distributed to NSA staff:
February 10, 2025 at 6:13 PM
Many of these have multiple definitions depending on context. This is wholesale stupidity compounding into completely devastating destruction of our intelligence knowledgebases.
recent times have made it clear how vital knowledgebases like FlyBase @flybase.bsky.social are to the scientific community. and that they are not simply static websites, but living, dynamic, active entities run by dedicated humans. they require continuous support and can't be taken for granted. 🪰
Treat biological databases as infrastructure, not projects www.nature.com/articles/d41...
Treat biological databases as infrastructure, not projects
Letter to the Editor
www.nature.com
August 20, 2026 at 12:57 PM
recent times have made it clear how vital knowledgebases like FlyBase @flybase.bsky.social are to the scientific community. and that they are not simply static websites, but living, dynamic, active entities run by dedicated humans. they require continuous support and can't be taken for granted. 🪰
I am really good at reading, analyzing, organizing, and presenting information.
I can create great documents, knowledgebases, or reports that flow easily from high-level summaries to deeper dives.
Or I can organize your files, folders, and systems for better access & user experience.
I can create great documents, knowledgebases, or reports that flow easily from high-level summaries to deeper dives.
Or I can organize your files, folders, and systems for better access & user experience.
Hey, fellow Minnesotans.
You are all reminding me of something CRUCIAL.
We all have talents and skills that might not seem appropriate to this moment.
I DON'T CARE RAM 'EM RIGHT IN HERE!
Here are two of mine:
You are all reminding me of something CRUCIAL.
We all have talents and skills that might not seem appropriate to this moment.
I DON'T CARE RAM 'EM RIGHT IN HERE!
Here are two of mine:
January 10, 2026 at 7:47 PM
I am really good at reading, analyzing, organizing, and presenting information.
I can create great documents, knowledgebases, or reports that flow easily from high-level summaries to deeper dives.
Or I can organize your files, folders, and systems for better access & user experience.
I can create great documents, knowledgebases, or reports that flow easily from high-level summaries to deeper dives.
Or I can organize your files, folders, and systems for better access & user experience.
The future across all domains is subscription knowledgebases where, if you want accurate data, it's going to require human oversight and you're going to pay through the nose for it.
May 19, 2026 at 6:22 AM
The future across all domains is subscription knowledgebases where, if you want accurate data, it's going to require human oversight and you're going to pay through the nose for it.
From #OUP s @bioinfoadv.bsky.social journal | Empowering biological knowledgebases: advances in human-in-the-loop AI-driven literature #curation | #Bioinformatics #AI #LLM #OpenScience #Biocuration | 🧬 🖥️ 🧪 🔓
⬇️
academic.oup.com/bioinformati...
⬇️
academic.oup.com/bioinformati...
Empowering biological knowledgebases: advances in human-in-the-loop AI-driven literature curation
Abstract. Biological knowledgebases facilitate discovery across the life sciences by structuring experimental findings into human-readable and computable f
academic.oup.com
March 4, 2026 at 11:32 AM
From #OUP s @bioinfoadv.bsky.social journal | Empowering biological knowledgebases: advances in human-in-the-loop AI-driven literature #curation | #Bioinformatics #AI #LLM #OpenScience #Biocuration | 🧬 🖥️ 🧪 🔓
⬇️
academic.oup.com/bioinformati...
⬇️
academic.oup.com/bioinformati...
He is a decisive and intelligent leader, but he always asks for suggestions and takes them into account.
He knows the strengths and knowledgebases of his crew and trusts them.
He treats the women with the same or more (as merited) prestige and trust as the men.
He expresses emotion.
He cooks.
He knows the strengths and knowledgebases of his crew and trusts them.
He treats the women with the same or more (as merited) prestige and trust as the men.
He expresses emotion.
He cooks.
January 15, 2025 at 3:57 PM
He is a decisive and intelligent leader, but he always asks for suggestions and takes them into account.
He knows the strengths and knowledgebases of his crew and trusts them.
He treats the women with the same or more (as merited) prestige and trust as the men.
He expresses emotion.
He cooks.
He knows the strengths and knowledgebases of his crew and trusts them.
He treats the women with the same or more (as merited) prestige and trust as the men.
He expresses emotion.
He cooks.
I just realized. I'm creating a cover letter knowledgebase.
I am so autistic about knowledgebases. I want to just be a knowledgebase writer.
I am so autistic about knowledgebases. I want to just be a knowledgebase writer.
April 6, 2026 at 8:31 PM
I just realized. I'm creating a cover letter knowledgebase.
I am so autistic about knowledgebases. I want to just be a knowledgebase writer.
I am so autistic about knowledgebases. I want to just be a knowledgebase writer.
Pro tip for getting your data into SGD and other knowledgebases: don't hide the data in the supplemental info in PDF format. Put it in Excel with stable identifiers like SGDIDs and systematic_names (ex. YFL039C) in addition to gene names. #yeast #modelOrganism #getYourDataOutGetCited
August 20, 2025 at 3:17 PM
Pro tip for getting your data into SGD and other knowledgebases: don't hide the data in the supplemental info in PDF format. Put it in Excel with stable identifiers like SGDIDs and systematic_names (ex. YFL039C) in addition to gene names. #yeast #modelOrganism #getYourDataOutGetCited
This issue of #GENETICS offers updates on 6 model organism databases & knowledgebases: buff.ly/Mn0hIzl
🔎 AgBioData Consortium
🔎 Candida Genome Database
🔎 Saccharomyces Genome Database
🔎 SpudDB
🔎 Unified Phenotype Ontology
🔎 Zebrafish Information Network
Remember to cite your community resources!
🔎 AgBioData Consortium
🔎 Candida Genome Database
🔎 Saccharomyces Genome Database
🔎 SpudDB
🔎 Unified Phenotype Ontology
🔎 Zebrafish Information Network
Remember to cite your community resources!
March 26, 2025 at 1:00 PM
This issue of #GENETICS offers updates on 6 model organism databases & knowledgebases: buff.ly/Mn0hIzl
🔎 AgBioData Consortium
🔎 Candida Genome Database
🔎 Saccharomyces Genome Database
🔎 SpudDB
🔎 Unified Phenotype Ontology
🔎 Zebrafish Information Network
Remember to cite your community resources!
🔎 AgBioData Consortium
🔎 Candida Genome Database
🔎 Saccharomyces Genome Database
🔎 SpudDB
🔎 Unified Phenotype Ontology
🔎 Zebrafish Information Network
Remember to cite your community resources!
oooh yes I love seeing personal wikis/knowledgebases 👀
December 11, 2024 at 8:44 PM
oooh yes I love seeing personal wikis/knowledgebases 👀
Databases and knowledgebases are essential infrastructure for genetics research—supporting data sharing, discovery, and reproducibility across the field.
Read the full April #GENETICS issue: buff.ly/YQA781d
1/2🧵
Read the full April #GENETICS issue: buff.ly/YQA781d
1/2🧵
April 9, 2026 at 4:05 PM
Databases and knowledgebases are essential infrastructure for genetics research—supporting data sharing, discovery, and reproducibility across the field.
Read the full April #GENETICS issue: buff.ly/YQA781d
1/2🧵
Read the full April #GENETICS issue: buff.ly/YQA781d
1/2🧵
The difference is usually in whether you're likable or not.
Nerds are cool
Geeks are to be avoided
Even when their individual fixations/knowledgebases are the same thing.
Nerds are cool
Geeks are to be avoided
Even when their individual fixations/knowledgebases are the same thing.
What is the difference between a nerd and a geek?
I feel like these terms have gotten conflated
I feel like these terms have gotten conflated
September 8, 2026 at 4:27 PM
The difference is usually in whether you're likable or not.
Nerds are cool
Geeks are to be avoided
Even when their individual fixations/knowledgebases are the same thing.
Nerds are cool
Geeks are to be avoided
Even when their individual fixations/knowledgebases are the same thing.
I‘m a volunteer with seattlecommunitynetwork.org, and there are many local community networks.
On another axis, @rude1.blacksky.team, @transrights.northsky.social, etc., building for global communities.
Beyond that, all the existing open source, methodologies, best practices and knowledgebases.
On another axis, @rude1.blacksky.team, @transrights.northsky.social, etc., building for global communities.
Beyond that, all the existing open source, methodologies, best practices and knowledgebases.
September 18, 2025 at 8:32 PM
I‘m a volunteer with seattlecommunitynetwork.org, and there are many local community networks.
On another axis, @rude1.blacksky.team, @transrights.northsky.social, etc., building for global communities.
Beyond that, all the existing open source, methodologies, best practices and knowledgebases.
On another axis, @rude1.blacksky.team, @transrights.northsky.social, etc., building for global communities.
Beyond that, all the existing open source, methodologies, best practices and knowledgebases.
It is a heist of our knowledgebases, we need to protect libraries and depositories more than anything.
March 13, 2026 at 7:44 AM
It is a heist of our knowledgebases, we need to protect libraries and depositories more than anything.
I can't remember a specific instance, but, between moderating and writing articles for knowledgebases and the like, it's probably happened.
January 7, 2026 at 6:13 AM
I can't remember a specific instance, but, between moderating and writing articles for knowledgebases and the like, it's probably happened.
Realising #FAIR’s promise requires sustained investment in the infrastructures that organise, standardise, and curate #data: deposition databases and knowledgebases. www.nature.com/articles/s41...
The missing link in FAIR data policy: biodata resources in life sciences - Scientific Data
In the life sciences, FAIR principles have reshaped research policy, but their implementation still relies largely on individual researchers – many of whom lack the expertise or support needed to make...
www.nature.com
July 23, 2026 at 2:45 PM
Realising #FAIR’s promise requires sustained investment in the infrastructures that organise, standardise, and curate #data: deposition databases and knowledgebases. www.nature.com/articles/s41...
I miss technical forums. The rise of AI generated slop tech sites makes it very hard to find solutions to extremely weird problems
Though thankfully I’ve got corpo access to some knowledgebases for the really important stuff
Though thankfully I’ve got corpo access to some knowledgebases for the really important stuff
October 5, 2024 at 5:37 PM
I miss technical forums. The rise of AI generated slop tech sites makes it very hard to find solutions to extremely weird problems
Though thankfully I’ve got corpo access to some knowledgebases for the really important stuff
Though thankfully I’ve got corpo access to some knowledgebases for the really important stuff
🔗 Developing foundations for biomedical knowledgebases from literature using large language models – A systematic assessment. Computational and Structural Biotechnology Journal, DOI: doi.org/10.1016/j.cs...
📚 CSBJ: www.csbj.org
#LargeLanguageModels #BiomedicalAI #DigitalHealth #Bioinformatics #LLM
📚 CSBJ: www.csbj.org
#LargeLanguageModels #BiomedicalAI #DigitalHealth #Bioinformatics #LLM
September 2, 2025 at 10:17 PM
🔗 Developing foundations for biomedical knowledgebases from literature using large language models – A systematic assessment. Computational and Structural Biotechnology Journal, DOI: doi.org/10.1016/j.cs...
📚 CSBJ: www.csbj.org
#LargeLanguageModels #BiomedicalAI #DigitalHealth #Bioinformatics #LLM
📚 CSBJ: www.csbj.org
#LargeLanguageModels #BiomedicalAI #DigitalHealth #Bioinformatics #LLM
Yeah. I have. Not only do I organize weeklies, biweeklies, semi-annual tournaments & more, but I also write guides, create knowledgebases, admin online communities, & spent the last two years running an after school program using fighting games as a vector for improving the lives of COVID-era kids.
January 16, 2026 at 3:07 PM
Yeah. I have. Not only do I organize weeklies, biweeklies, semi-annual tournaments & more, but I also write guides, create knowledgebases, admin online communities, & spent the last two years running an after school program using fighting games as a vector for improving the lives of COVID-era kids.