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phimresearch.bsky.social
[ #phimscience ] 📢 New PEARLS in #PLoSPathogens by #LeoBlondet et al 2025 #sentinels 🐜 🐜 🐜 #virosphere 🦠 #OneHealth 🌍 @cirad.bsky.social @ird-fr.bsky.social #UniversitéMarienNgouabi @inrae-france.bsky.social #ArizonaStateUniversity
Sentinels tracking viruses in various ecosystems: Towards a One Health approach
journals.plos.org
June 3, 2025 at 8:00 PM
phimresearch.bsky.social
[ #phimscience ] 📢New work by #AlainDéronKoffi on the diversity of #insects involved in the spread of #CSSV disease in #IvoryCoast #Cocoa4Future #RégisBabin #JulienHaran #OualiN’goranMauricette @cirad.bsky.social #UFHB @anses-fr.bsky.social @phimresearch.bsky.social @cbgpmontpellier.bsky.social
A barcode database for insects associated with the spread of the Cocoa Swollen Shoot Virus Disease in Côte d’Ivoire
Swollen Shoot is a viral disease affecting cocoa trees, transmitted by several species of mealybugs (Insecta, Hemiptera, Sternorrhyncha, Pseudococcidae). These insects maintain trophobiotic relationsh...
bdj.pensoft.net
March 16, 2025 at 2:29 PM
phimresearch.bsky.social
[ #phimscience ] Major insights in the cacao's world on the diversity of insects involved in #CSSV outbreaks in #IvoryCoast #Cocoa4Future #preprint @cirad.bsky.social #UFHB #WASCAL @anses-fr.bsky.social
📖 doi.org/10.3897/arph...
A barcode database for insects associated with the spread of the Cocoa Swollen Shoot Virus Disease in Côte d’Ivoire
Swollen Shoot is a viral disease affecting cocoa trees, transmitted by several species of mealybugs (Insecta: Hemiptera: Sternorrhyncha: Pseudococcidae). These insects maintain trophobiotic relationsh...
doi.org
December 13, 2024 at 3:28 PM
phimresearch.bsky.social
[ #phimscience ] 🎯 Discover all the potential of our new #RCA sequencing #diagnostic with #OxfordNanoporeTechnology #cassava #ACMV #fababean #FBNSV 💻🧬🦠 @cirad.bsky.social #WAVE #UFHB
Improvement of Nanopore sequencing provides access to high quality genomic data for multi-component CRESS-DNA plant viruses - Virology Journal
Background Faced with the recrudescence of viral CRESS-DNA plant diseases, the availability of efficient and cost-effective tools for routine diagnosis and genomic characterisation is vital. As these ...
virologyj.biomedcentral.com
March 20, 2025 at 7:39 PM
phimresearch.bsky.social
[ #phimscience ] New paper highlighting the importance of #landscape context for #CoffeeBerryBorer management strategies 🌳🪲⛰️ @cirad.bsky.social #CATIE #ENSA

📖 Published in #FrontiersSustainableFoodSystems
Frontiers | Quantifying movement of the coffee berry borer at the interface between coffee plantations and adjacent land uses
IntroductionInsect pests cause important crop production losses worldwide. Their distribution and movement are affected by climate and land use change and ag...
doi.org
December 20, 2024 at 10:21 AM
phimresearch.bsky.social
[ #phimscience] 📢 New publication led by #JudithNantongo in #AgroforestrySystems for a sustainable future for #coffee in #Uganda #ROBUST_DeSIRA #NARO #NaFORRI @cirad.bsky.social

📖 Consult the full review with SharedIt rdcu.be/ejx94

☕ link.springer.com/article/10.1...
Coffee-agroforestry system showing a dense agroforestry and non-shaded trees (https://link.springer.com/article/10.1007/s10457-025-01192-x/figures/2) Coffee-agroforestry system showing a dense agroforestry and non-shaded trees (https://link.springer.com/article/10.1007/s10457-025-01192-x/figures/2)
April 27, 2025 at 3:51 PM
phimresearch.bsky.social
[#phimscience] 🥳Read the NEW perspective from the French network on Xanthomonads @AgenceRecherche @COSTprogramm @ird_fr @Cirad @inrae-france.bsky.social published in @peercommunityin.bsky.social
Celebrating the 20th anniversary of the first Xanthomonas genome sequences – how genomics revolutionized taxonomy, provided insight into the emergence of pathogenic bacteria, enabled new fundamenta...
peercommunityjournal.org
February 28, 2024 at 5:19 PM
phimresearch.bsky.social
[ #phimscience ] Presence of #Xanthomonas-phaseoli-pv-manihotis in main cassava cropping regions in #BurkinaFaso, with important variation in incidence at locality and variety scale #UniversitéNazi-BONI #CNRST #INERA #IRD #LMIPathobios @cirad.bsky.social
Genetic diversity and incidence of cassava bacterial blight (CBB) caused by Xanthomonas phaseoli pv. manihotis in Burkina Faso
Variable incidence of cassava bacterial blight was observed in Burkina Faso. MLVA-14 analysis of isolated strains of Xanthomonas phaseoli pv. manihotis revealed diversity at different levels includin...
bsppjournals.onlinelibrary.wiley.com
December 8, 2024 at 11:57 AM
phimresearch.bsky.social
[#phimscience] 🍌New work on #RNA silencing pathways in #banana led by #PierreOlivierDuroy published in @newphyt.bsky.social 👏#eBSV #Cirad @inrae-france.bsky.social #PHIM #AGAP #UniBasel

nph.onlinelibrary.wiley.com/doi/10.1111/...
Endogenous viral elements are targeted by RNA silencing pathways in banana
Endogenous banana streak virus (eBSV) integrants derived from three distinct species, present in Musa balbisiana (B) but not Musa acuminata (A) banana genomes are able to reconstitute functional epi...
nph.onlinelibrary.wiley.com
September 20, 2024 at 10:43 AM
phimresearch.bsky.social
[ #phimscience ] New work on #nematodes led by Coulibaly et al. #Meloidogynejavanica #papaya published in #TropicalPlantPathology #CNRST_BurkinaFaso #INERA @ird-fr.bsky.social #UniversitéJosephKI-ZERBO #PathoBios

🤔 Consult the preprint on #ResearchSquare
Life cycle of the root-knot nematode Meloidogyne javanica in papaya and histological analyses of root infection and gall development - Tropical Plant Pathology
Papaya (Carica papaya L.) is susceptible to attacks by root-knot nematodes (RKN), which lead to significant production losses. Understanding the life cycle of RKN in papaya is essential for developing...
link.springer.com
April 27, 2025 at 11:46 AM
phimresearch.bsky.social
[ #phimscience ] In this new paper, the #temporal behaviour of #cacao clone production over 18 years is evaluated by analyzing the dynamics of pod production🍫📊 @cirad.bsky.social #CATIE #GreenQuillsInternational #CacaoConsultant

📖 Published in #AgronomySustainableDevelopment
Temporal behaviour of cacao clone production over 18 years - Agronomy for Sustainable Development
This study aimed to evaluate the stability of cacao clone production by analyzing the dynamics of pod production over time. It investigates correlations in multi-year production levels and explores ho...
doi.org
December 20, 2024 at 10:16 AM
phimresearch.bsky.social
[ #phimscience ] 📢Just out !!! 2024 taxonomy update for the family #Circoviridae with the particpation of #PhilippeRoumagnac #MicroQuar 📚 @cirad.bsky.social
2024 taxonomy update for the family Circoviridae - Archives of Virology
Circovirids have a circular single-stranded DNA genome packed into a small icosahedral capsid. They are classified within two genera, Circovirus and Cyclovirus, in the family Circoviridae (phylum Cres...
link.springer.com
December 20, 2024 at 10:11 AM
phimresearch.bsky.social
[ #phimscience ] #Azoxystrobin -based precision control of #CBD #Colletotrichumkahawae in #Arabica #coffee plantations @cirad.bsky.social #IRAD #UniversityYaounde #UniversityBamenda
Chemical control against coffee berry disease: the efficacy of fungicides and berry position on disease incidence - Journal of Plant Diseases and Protection
Coffee berry disease (CBD) caused by Colletotrichum kahawae is a major constraint of Arabica coffee production in Africa. CBD-related losses in Cameroon might be estimated to reach up to 80%. The obje...
link.springer.com
December 8, 2024 at 9:43 AM
phimresearch.bsky.social
[ #phimscience ] 📢First report of #Pucciniakuehnii in Gabon led by #JordanDijoux #PHIM #AGAP @cirad.bsky.social #eRcane #LesSucreriesGabon 🧬🧬🧬

📰https://link.springer.com/article/10.1007/s12355-024-01446-5
December 7, 2024 at 5:05 PM
phimresearch.bsky.social
[#phimscience] #ColletotrichumKahawae in #Burundi #CoffeeBerryDisease - low #dispersion ability & the most recently populations deriving from the ancestral Angolan population @cirad.bsky.social #InstitutAgroMtp
#ISABU 🦠☕️

📖 doi.org/10.1007/s421...
November 29, 2024 at 12:05 PM
phimresearch.bsky.social
[#phimscience]㊗️Terrific job in @currentbiology.bsky.social about diversity rice immune receptors & disease resistance #YuanyangTerraces #NLR lead by @pgladieux.bsky.social @inrae-france.bsky.social #EastAngliaUniversity #SouthwestForestryUniversity #Cirad #YunnanAgriculturalUniversity
Extensive immune receptor repertoire diversity in disease-resistant rice landraces
Gladieux et al. show that rice landraces from Yunnan have high and ancient sequence diversity in NLR immune receptors. The maintenance of elevated standing genetic variation at NLRs may explain why tr...
www.cell.com
August 22, 2024 at 11:05 AM
phimresearch.bsky.social
[#phimscience] 🤝 We are thrilled to announce our participation to an impressive collaborative work for the futur of #PlantHealth surveillance @inrae-france.bsky.social #ANSES
#IRD #CIRAD lead by #samuel_soubeyrand

cabiagbio.biomedcentral.com/articles/10....
Building integrated plant health surveillance: a proactive research agenda for anticipating and mitigating disease and pest emergence - CABI Agriculture and Bioscience
In an era marked by rapid global changes, the reinforcement and modernization of plant health surveillance systems have become imperative. Sixty-five scientists present here a research agenda for an e...
cabiagbio.biomedcentral.com
August 22, 2024 at 10:24 AM
phimresearch.bsky.social
[#phimscience] 📢New work by @MathildeChen & coll#ClimateData ⛈️#MachineLearning #LinearRegression models 📉 💻 to predict #soybean yields

Funded by @CLAND_saclay with @MiaParisSaclay @AgroParisTech @CIRAD

▶️More detail lnkd.in/e5PRxSQM via @IOPenvironment
Sites included for analyses. Chen et al 2024 Environ. Res. Lett. https://doi.org/10.1088/1748-9326/ad42b5
April 25, 2024 at 10:59 PM
phimresearch.bsky.social
[#phimscience] New perpespectives towards #pesticicide-free #orchards 🍎🍏🍊🍑Breeding for #resilience #biomarkers
@INRAE_France @Cirad 📈📉📊
Dare to be resilient: the key to future pesticide-free orchards?
Abstract. In a context of urgent need for a more sustainable fruit tree production, it's high time to find durable alternatives to the systematic use of ph
doi.org
April 23, 2024 at 10:40 AM
phimresearch.bsky.social
[#phimscience] New work from @MicroQuar on #ViromeReleaseHypothesis #EnemyReleaseHypothesis in @Virus_Evolution @TourduValat @UPvbmt #UMR_BFP @PHIM_research @Cirad @inrae-france.bsky.social @UWConline @UCT_news @ASUS @dbgphx @AgenceRecherche

Enjoy !!!😉 doi.org/10.1093/ve/v...
Network visualization of plant-virus interactions in French and American ecosystems: Differentiation of PAV into PHY (plant viruses) and MYC (mycoviruses) with color-coded transmission modes and plant species demarcating indigenous species from B. barbinodis. Spatio-temporal invasion of France by Bothriochloa barbinodis since 1990. For each five-year period, newly colonized French Department are shown in dark blue, those already colonized during the previous period are depicted in light blue.
March 24, 2024 at 1:27 PM
phimresearch.bsky.social
[#phimscience] Genomic diving into resistance to orange #rust in #JordanDijoux et al 2024 published in @theorapplgenet.bsky.social #GWAS @phimresearch.bsky.social @AgapInstitut @Cirad #eRcane
Unveiling the predominance of Saccharum spontaneum alleles for resistance to orange rust in sugarcane using genome-wide association - Theoretical and Applied Genetics
Key message Six QTLs of resistance to sugarcane orange rust were identified in modern interspecific hybrids by GWAS. For five of them, the resistance alleles originated from S. spontaneum. Altogether,...
link.springer.com
March 20, 2024 at 8:03 PM
phimresearch.bsky.social
[#phimscience] 🌾 Read our new work on #GenomeEditing & #DiseaseResitance #rice #RYMV #CRISPR published in
@PlantBiotechJ @ird_fr @HHU_de
Rice Yellow Mottle Virus resistance by genome editing of the Oryza sativa L. ssp. japonica nucleoporin gene OsCPR5.1 but not OsCPR5.2
Rice yellow mottle virus (RYMV) causes one of the most devastating rice diseases in Africa. Management of RYMV is challenging. Genetic resistance provides the most effective and environment-friendly ....
onlinelibrary.wiley.com
March 7, 2024 at 9:27 PM