chuds: there are only two genders
Also chuds: there are eighty distinct phylogenies and psychometric groups of men
Also chuds: there are eighty distinct phylogenies and psychometric groups of men
it’s so beautiful how joe rogan guys invented their own astrology
October 30, 2024 at 12:01 AM
chuds: there are only two genders
Also chuds: there are eighty distinct phylogenies and psychometric groups of men
Also chuds: there are eighty distinct phylogenies and psychometric groups of men
Sketch, capture and layout phylogenies www.biorxiv.org/content/10.1... 🧬🖥️🧪 github.com/husonlab/phy...
April 3, 2025 at 3:54 PM
Sketch, capture and layout phylogenies www.biorxiv.org/content/10.1... 🧬🖥️🧪 github.com/husonlab/phy...
Interesting for epidemiology as well as macroevolution and biogeography.
Rates of species interactions from co-phylogenies.
www.biorxiv.org/content/10.1...
🧪 ⚒️ #Paleobio #EvoBio
Rates of species interactions from co-phylogenies.
www.biorxiv.org/content/10.1...
🧪 ⚒️ #Paleobio #EvoBio
May 20, 2025 at 3:57 PM
Interesting for epidemiology as well as macroevolution and biogeography.
Rates of species interactions from co-phylogenies.
www.biorxiv.org/content/10.1...
🧪 ⚒️ #Paleobio #EvoBio
Rates of species interactions from co-phylogenies.
www.biorxiv.org/content/10.1...
🧪 ⚒️ #Paleobio #EvoBio
Incredibly excited to share that our manuscript was just published in @nature.com ! What a way to start the new year! 🎉
https://buff.ly/4gyYCzx
We present phylowave, a framework that enables to learn the fitness dynamics of pathogens from phylogenies.
🧵 A thread... 1/n
#IDSky #IDModelling
https://buff.ly/4gyYCzx
We present phylowave, a framework that enables to learn the fitness dynamics of pathogens from phylogenies.
🧵 A thread... 1/n
#IDSky #IDModelling
Learning the fitness dynamics of pathogens from phylogenies - Nature
Phylowave, an innovative phylogenetic approach, can identify the main circulating pathogen lineages with increased fitness and the associated genetic changes, enabling the timely identification of…
buff.ly
January 2, 2025 at 8:03 AM
Incredibly excited to share that our manuscript was just published in @nature.com ! What a way to start the new year! 🎉
https://buff.ly/4gyYCzx
We present phylowave, a framework that enables to learn the fitness dynamics of pathogens from phylogenies.
🧵 A thread... 1/n
#IDSky #IDModelling
https://buff.ly/4gyYCzx
We present phylowave, a framework that enables to learn the fitness dynamics of pathogens from phylogenies.
🧵 A thread... 1/n
#IDSky #IDModelling
April 1, 2024 at 10:57 PM
Very excited to learn I was awarded an OU Junior Faculty Fellowship! Looking forward to working on a project involving fossils, molecular phylogenies, and the coolest crinoid lineage in the history of life!
March 5, 2025 at 11:18 PM
Very excited to learn I was awarded an OU Junior Faculty Fellowship! Looking forward to working on a project involving fossils, molecular phylogenies, and the coolest crinoid lineage in the history of life!
Fantastic demonstration of the power of comparative genomics across large phylogenies to discover the mechanistic basis of a convergently evolved trait, hibernation
www.science.org/doi/10.1126/...
www.science.org/doi/10.1126/...
August 5, 2025 at 7:11 AM
Fantastic demonstration of the power of comparative genomics across large phylogenies to discover the mechanistic basis of a convergently evolved trait, hibernation
www.science.org/doi/10.1126/...
www.science.org/doi/10.1126/...
"our estimated mitochondrial and nuclear phylogenies were similar to those published previously"
RECORD SCRATCH
well hold the FUCK on, that's not what y'all have been saying in your media blitz??????????????
RECORD SCRATCH
well hold the FUCK on, that's not what y'all have been saying in your media blitz??????????????
April 12, 2025 at 1:33 AM
"our estimated mitochondrial and nuclear phylogenies were similar to those published previously"
RECORD SCRATCH
well hold the FUCK on, that's not what y'all have been saying in your media blitz??????????????
RECORD SCRATCH
well hold the FUCK on, that's not what y'all have been saying in your media blitz??????????????
And should a biologist find themselves without themed wears? Many a booth offer adornments for the wayward and tired biologist!
January 6, 2026 at 1:11 AM
And should a biologist find themselves without themed wears? Many a booth offer adornments for the wayward and tired biologist!
I'm finding this little pipeline to get trees out of BUSCO runs quite convenient
#phylogenomics
github.com/jamiemcg/BUS...
#phylogenomics
github.com/jamiemcg/BUS...
GitHub - jamiemcg/BUSCO_phylogenomics: BUSCO_Phylogenomics | Pipeline to construct species phylogenies using BUSCO proteins
BUSCO_Phylogenomics | Pipeline to construct species phylogenies using BUSCO proteins - jamiemcg/BUSCO_phylogenomics
github.com
March 23, 2026 at 12:17 PM
I'm finding this little pipeline to get trees out of BUSCO runs quite convenient
#phylogenomics
github.com/jamiemcg/BUS...
#phylogenomics
github.com/jamiemcg/BUS...
Bayesian Least-Squares Supertrees (BLeSS): flexible inference of large time-calibrated phylogenies https://www.biorxiv.org/content/10.1101/2024.11.29.625936v1
Bayesian Least-Squares Supertrees (BLeSS): flexible inference of large time-calibrated phylogenies https://www.biorxiv.org/content/10.1101/2024.11.29.625936v1
Time-calibrated phylogenies are key to macroevolutionary hypothesis testing and parameter inference,
www.biorxiv.org
December 5, 2024 at 6:33 PM
Bayesian Least-Squares Supertrees (BLeSS): flexible inference of large time-calibrated phylogenies https://www.biorxiv.org/content/10.1101/2024.11.29.625936v1
Cool study. On a separate note, wow we need more (and larger) phylogenies of invertebrate clades
Diversification rate shifts are everywhere. Analyses of phylogenies covering >300k species reveal widespread changes in speciation dynamics across the Tree of Life.
@bjorntko.bsky.social @hoehna.bsky.social @acapomorphic.bsky.social academic.oup.com/evlett/advan...
@bjorntko.bsky.social @hoehna.bsky.social @acapomorphic.bsky.social academic.oup.com/evlett/advan...
March 10, 2026 at 1:34 PM
Cool study. On a separate note, wow we need more (and larger) phylogenies of invertebrate clades
I've built some initial Nextstrain phylogenies of the Andes Hantavirus variant, which include the sequence generated by HUG & UniZurich, Switzerland.
Please interpret with caution.
By segment:
S: nextstrain.org/groups/hodcr...
M: nextstrain.org/groups/hodcr...
L: nextstrain.org/groups/hodcr...
Please interpret with caution.
By segment:
S: nextstrain.org/groups/hodcr...
M: nextstrain.org/groups/hodcr...
L: nextstrain.org/groups/hodcr...
May 8, 2026 at 8:22 PM
I've built some initial Nextstrain phylogenies of the Andes Hantavirus variant, which include the sequence generated by HUG & UniZurich, Switzerland.
Please interpret with caution.
By segment:
S: nextstrain.org/groups/hodcr...
M: nextstrain.org/groups/hodcr...
L: nextstrain.org/groups/hodcr...
Please interpret with caution.
By segment:
S: nextstrain.org/groups/hodcr...
M: nextstrain.org/groups/hodcr...
L: nextstrain.org/groups/hodcr...
Getting excited... for #FossilFriday ! Our Morrison Ankylosaur monograph may be published online in a week. Hopefully, this will lead to a fix in many ankylosaur phylogenies. A dozen known Morrison ankylosaur sites spanning 4 states. Who would have think it 35 years ago?
November 28, 2025 at 9:29 PM
Getting excited... for #FossilFriday ! Our Morrison Ankylosaur monograph may be published online in a week. Hopefully, this will lead to a fix in many ankylosaur phylogenies. A dozen known Morrison ankylosaur sites spanning 4 states. Who would have think it 35 years ago?
academic.oup.com/evlett/advan...
So exciting to see a new method to model the evolution of G (and P) matrices on phylogenies. Another step in the direction of trying to bridge micro and macroevolution
So exciting to see a new method to model the evolution of G (and P) matrices on phylogenies. Another step in the direction of trying to bridge micro and macroevolution
Multivariate trait evolution: models for the evolution of the quantitative genetic G-matrix on phylogenies
Abstract. Genetic covariance matrices (G-matrices) are a key focus for research and predictions from quantitative genetic evolutionary models of multiple t
academic.oup.com
November 7, 2025 at 8:58 AM
academic.oup.com/evlett/advan...
So exciting to see a new method to model the evolution of G (and P) matrices on phylogenies. Another step in the direction of trying to bridge micro and macroevolution
So exciting to see a new method to model the evolution of G (and P) matrices on phylogenies. Another step in the direction of trying to bridge micro and macroevolution
...and next up we have former Palaeo@Leeds member @bethanyjallen.bsky.social talking about inferring extinction rates from phylogenies!
December 10, 2024 at 1:19 PM
...and next up we have former Palaeo@Leeds member @bethanyjallen.bsky.social talking about inferring extinction rates from phylogenies!
New paper out from @hoehna.bsky.social Lab, led by the brilliant @bjorntko.bsky.social! We applied the Pesto software (Kopperud & Höhna, 2025) to look at lineage-specific shifts in diversification rate on large, densely-sampled phylogenies across the Tree of Life doi.org/10.1093/evle...
March 4, 2026 at 1:14 PM
New paper out from @hoehna.bsky.social Lab, led by the brilliant @bjorntko.bsky.social! We applied the Pesto software (Kopperud & Höhna, 2025) to look at lineage-specific shifts in diversification rate on large, densely-sampled phylogenies across the Tree of Life doi.org/10.1093/evle...
Not exactly what your after but I think this is great discussion of what phylogenies do / don't tell us in CE.
Bromham L (2023) Meaning and purpose: Using phylogenies to investigate human history and cultural evolution. Biological Theory, 18(4), 284-302. doi.org/10.1007/s137...
Bromham L (2023) Meaning and purpose: Using phylogenies to investigate human history and cultural evolution. Biological Theory, 18(4), 284-302. doi.org/10.1007/s137...
Meaning and Purpose: Using Phylogenies to Investigate Human History and Cultural Evolution - Biological Theory
Phylogenies are increasingly being used to investigate human history, diversification and cultural evolution. While using phylogenies in this way is not new, new modes of analysis are being applied to...
doi.org
March 30, 2025 at 10:30 PM
Not exactly what your after but I think this is great discussion of what phylogenies do / don't tell us in CE.
Bromham L (2023) Meaning and purpose: Using phylogenies to investigate human history and cultural evolution. Biological Theory, 18(4), 284-302. doi.org/10.1007/s137...
Bromham L (2023) Meaning and purpose: Using phylogenies to investigate human history and cultural evolution. Biological Theory, 18(4), 284-302. doi.org/10.1007/s137...
🎂 Happy 10th birthday to the fossilised birth-death model, and happy 50th birthday to Paleobiology 🎂
I had a lot of fun working on this review, led by @lauramulvey.bsky.social, in which we celebrate how the FBD has been applied and give pointers to those interested in giving it a go! 🌳
I had a lot of fun working on this review, led by @lauramulvey.bsky.social, in which we celebrate how the FBD has been applied and give pointers to those interested in giving it a go! 🌳
From fossils to phylogenies: exploring the integration of paleontological data into Bayesian phylogenetic inference | Paleobiology | Cambridge Core
From fossils to phylogenies: exploring the integration of paleontological data into Bayesian phylogenetic inference - Volume 51 Issue 1
doi.org
April 23, 2025 at 8:23 AM
🎂 Happy 10th birthday to the fossilised birth-death model, and happy 50th birthday to Paleobiology 🎂
I had a lot of fun working on this review, led by @lauramulvey.bsky.social, in which we celebrate how the FBD has been applied and give pointers to those interested in giving it a go! 🌳
I had a lot of fun working on this review, led by @lauramulvey.bsky.social, in which we celebrate how the FBD has been applied and give pointers to those interested in giving it a go! 🌳
Big, beautiful trees!!
SMART-PTA for whole-genome+transcriptome on thousand of single cells from the normal human esophagus 🤯 Massively scaling up the power of scWGS to build deep phylogenies and chart somatic evolution from birth throughout life.
www.biorxiv.org/content/10.1...
SMART-PTA for whole-genome+transcriptome on thousand of single cells from the normal human esophagus 🤯 Massively scaling up the power of scWGS to build deep phylogenies and chart somatic evolution from birth throughout life.
www.biorxiv.org/content/10.1...
October 14, 2025 at 2:37 PM
Big, beautiful trees!!
SMART-PTA for whole-genome+transcriptome on thousand of single cells from the normal human esophagus 🤯 Massively scaling up the power of scWGS to build deep phylogenies and chart somatic evolution from birth throughout life.
www.biorxiv.org/content/10.1...
SMART-PTA for whole-genome+transcriptome on thousand of single cells from the normal human esophagus 🤯 Massively scaling up the power of scWGS to build deep phylogenies and chart somatic evolution from birth throughout life.
www.biorxiv.org/content/10.1...
further confirmation that systematics is good for my brain, if I cannot study some sort of wretched bugs’ phylogenies i think i shall shrivel up into a tun
January 6, 2025 at 2:10 AM
further confirmation that systematics is good for my brain, if I cannot study some sort of wretched bugs’ phylogenies i think i shall shrivel up into a tun
A seminal volume on the mathematical basis of phylogenies and branching processes in evolution 👇
🧪 #EvoBio #Paleobio
🧪 #EvoBio #Paleobio
A mathematical theory of evolution: phylogenetic models dating back 100 years—a new #PhilTransB theme issue describes recent developments in models of #evolutionary trees and networks, and in #phylogenetic modeling for applications in biology: https://buff.ly/41r1wkR @tanjastadler.bsky.social
buff.ly
February 21, 2025 at 12:42 PM
Important article on the practices of article writing, submission and troublesome reproducibility of the fossil vertebrate phylogenies.
In my view, most see phylogenies as eternally provisionary and probabilistic pictures.
www.tandfonline.com/doi/epdf/10....
🧪 ⚒️ #Geology #Paleobio #EvoBio
In my view, most see phylogenies as eternally provisionary and probabilistic pictures.
www.tandfonline.com/doi/epdf/10....
🧪 ⚒️ #Geology #Paleobio #EvoBio
April 17, 2026 at 11:02 PM
Important article on the practices of article writing, submission and troublesome reproducibility of the fossil vertebrate phylogenies.
In my view, most see phylogenies as eternally provisionary and probabilistic pictures.
www.tandfonline.com/doi/epdf/10....
🧪 ⚒️ #Geology #Paleobio #EvoBio
In my view, most see phylogenies as eternally provisionary and probabilistic pictures.
www.tandfonline.com/doi/epdf/10....
🧪 ⚒️ #Geology #Paleobio #EvoBio
My ANDV #Hantavirus @nextstrain.org phylogenies now pull directly from @pathoplexus.org to incorporate all seqs
I'll continue to improve them, & will keep them updated
Change the Tip Labels in the left-hand menu.
You can see links to all builds, plus tanglegrams at:
nextstrain.org/groups/hodcr...
I'll continue to improve them, & will keep them updated
Change the Tip Labels in the left-hand menu.
You can see links to all builds, plus tanglegrams at:
nextstrain.org/groups/hodcr...
May 10, 2026 at 10:50 PM
My ANDV #Hantavirus @nextstrain.org phylogenies now pull directly from @pathoplexus.org to incorporate all seqs
I'll continue to improve them, & will keep them updated
Change the Tip Labels in the left-hand menu.
You can see links to all builds, plus tanglegrams at:
nextstrain.org/groups/hodcr...
I'll continue to improve them, & will keep them updated
Change the Tip Labels in the left-hand menu.
You can see links to all builds, plus tanglegrams at:
nextstrain.org/groups/hodcr...
How do genetic variances and covariances evolve over deep time? This paper unifies quantitative genetics and macroevolution with analytical models for G-matrix evolution on phylogenies, enabling new tests of multivariate trait evolution.
academic.oup.com/evlett/artic...
academic.oup.com/evlett/artic...
Multivariate trait evolution: models for the evolution of the quantitative genetic G-matrix on phylogenies
Abstract. Genetic covariance matrices (G-matrices) are a key focus for research and predictions from quantitative genetic evolutionary models of multiple t
academic.oup.com
December 18, 2025 at 1:00 PM
How do genetic variances and covariances evolve over deep time? This paper unifies quantitative genetics and macroevolution with analytical models for G-matrix evolution on phylogenies, enabling new tests of multivariate trait evolution.
academic.oup.com/evlett/artic...
academic.oup.com/evlett/artic...