#cryoEM #cryoET #teamTOMO #Relion ❄️🔬
#IMOD /DeepETPicker style picker. Custom jobs for #SingleParticle and #Tomography. Not fully tested yet, little buggy on particle import. Have not stress tested the file caching so may need to split those star files, but opened 10 tomograms in test

I like the #DeepETPicker simple "mutual" (manual) picking module visualizer. #Relion is obviously a top #cryoEM/ #cryoET processing software package. The user interface is dated. It hasnt changed much since it was first created which I appreciate, but Im going to vibe some updates, integrate them...

#cryoEM #cryoET #teamTOMO #Relion ❄️🔬
#IMOD / DeepETPicker style picks visualizer. You can use this little applet to open tomograms (or as a rudimentary volume viewer) right inside the interface. You can't edit picks here, but that might be something I add.
I plan to #supportLT along side Relion

Manual picking directly in #Relion is now available in Relion-US UI based on DeepETPicker manual picking software #Python. Native Relion will pick up on these but you can't run them from the Relion GUI. You can browse for the star files directly (normal) though if you dont want to use webUI

New Title Alert: DeepETPicker- a deep learning based open-source software with a friendly user interface to pick 3D particles rapidly and accurately from cryo-electron tomograms.

More here: https://github.com/cbmi-group/DeepETPicker

#SBGridSoftware #SBGrid #structuralbiology

After spending part of the last 2 weeks trying to get a #tomography pipeline up and running.... I have a flow!
#DeepETPicker and #ReLiOn. Its quite easy to manually pick particles in DeepETPicker even though they tell you import from IMOD. Just jump to the last tab and use mutual picking.
#teamtomo