#MALAT1
A team from Universidad Andrés Bello (UNAB) used CRISPR to remove a tiny fragment of MALAT1 RNA, a molecule that plays a key role in gastric and breast cancer. By doing so, the researchers managed to destabilize the entire molecule and slow tumor progression.
Chilean scientists discover how to dismantle a key molecule in stomach and breast tumors
A team from Universidad Andrés Bello (UNAB) used CRISPR to remove a tiny fragment of MALAT1 RNA, a molecule that plays a key role in gastric and breast cancer. By doing so, the researchers managed to...
www.entnerd.com
September 24, 2026 at 12:35 PM
Nah... 🤓
That thing can't properly generate for me Malat1 lncRNA smFISH probes DESPITE giving it the refseq ID and giving it the option to fetch from the literature, so no worries, we are far from creating anything remotely 'biological' lolll. 😂😂😂
For over a century, new advances in science have fueled new worries about biological weapons, from the germ theory of disease to AI. Here’s my look at the risks—and what to do about them. Gift link: nyti.ms/4rdk6rJ
Leaked A.I. Queries Raise Fears of New Biological Weapons Race (Gift Article)
Current chatbots aren’t likely to help lone actors invent a deadly pathogen, experts say. But newer models, trained in biology, may need stronger safeguards.
nyti.ms
September 14, 2026 at 11:31 PM
A paper using RRID:AB_2879639 from @proteintech.bsky.social was just published in Medical Science Monitor. We value the author's support of reproducibility. #OpenScience #OpenResearch #BetterScience
Combination of Astragaloside IV and Tetramethylpyrazine Promotes Angiogenesis via the MALAT1–CXCL12/CXCR4 Axis in Brain Endothelial Cells After Ischemic Injury
Read the full paper: Combination of Astragaloside IV and Tetramethylpyrazine Promotes Angiogenesis via the MALAT1–CXCL12/CXCR4 Axis in Brain Endothelial Cells After Ischemic Injury
doi.org
September 9, 2026 at 7:02 AM
Cell cycle–dependent translation-mediated turnover of the long noncoding RNA Malat1. New study from Leah M. Plasek-Hegde, Nadya Dimitrova and colleagues @mcdb-yale.bsky.social:
rupress.org/jcb/article/...

#Cancer #CellCycle #CellDivision #RNAbiology #lncRNA
September 1, 2026 at 8:01 PM
Plasek-Hedge, Dimitrova et al. show that Malat1, a #lncRNA thought to be exclusively nuclear, highly abundant, and very stable, in fact localizes to the cytoplasm in early G1, where it is degraded at the onset of each #cellcycle by a translation-mediated decay pathway. rupress.org/jcb/article/...
August 25, 2026 at 4:00 PM
In @jcb.org, Plasek-Hedge et al. show that Malat1, a #lncRNA thought to be exclusively nuclear, highly abundant, and very stable, in fact localizes to the cytoplasm in early G1, where it is degraded at the onset of each #cellcycle by a translation-mediated decay pathway. rupress.org/jcb/article/...
August 25, 2026 at 4:00 PM
Dive into the TRNAU1AP and PRPF39 discovery! They are key in controlling MALAT1's 3'-end processing, reducing its levels, revealing a new RMPPc pathway. Fascinating find! PMID:42277007, Nat Commun 2026, @NatureComms https://doi.org/10.1038/s41467-026-74036-6 #Medsky #Pharmsky #RNA #ASHG #ESHG 🧪
TRNAU1AP and PRPF39 establish integrated control over processing of most abundant human non-coding RNAs | Nature Communications
Although abundance of the metastasis-associated long non-coding RNA MALAT1 depends on the maturation of its triple-helix-containing 3′ end via non-canonical processing, the control of this step has remained unknown. Using iterative genome-wide screening, we identified TRNAU1AP and PRPF39 that together control the 3′-end processing of MALAT1, enabling a reduction in its levels. We further show that these factors form part of a previously unrecognized RNase MRP and P control (RMPPc) pathway that, in addition to MALAT1, establishes integrated control over the processing of MEN-β, internal transcribed spacers in pre-rRNA, and 5′-leader sequences in pre-tRNA, thereby impacting fundamental processes prerequisite for translation. We demonstrate that this far-reaching impact is achieved through a single control point: inclusion of the initiating ATG-containing exon 2 in RPP14, an essential component of both RNase MRP and RNase P, thereby controlling both catalytic RNAs—MRP RNA and H1 RNA. Fina
doi.org
July 23, 2026 at 1:00 AM
Knockdown was seen in liver but at lower levels than high dose unconjugates ASO. Single cell sequencing of Malat1 targeting bicycle-ASO treated muscle confirmed knockdown across myonuclei with higher reductions for type 2 fibers than type 1 fibers and lower knockdown in smooth muscle and fat cells
July 21, 2026 at 2:34 AM
Authors performed an in vivo mouse study using 4 subcutaneous injections of 50 mg/kg/week including also scrambled control ASos. qPCR analysis revealed knockdown of Malat1 in liver, kidney and skeletal muscle, but not in other tissues.
July 14, 2026 at 7:18 AM
Here authors focused on the RNase H approach using a Malat1 targeting sequence previously published (Malat1 is a perfect target to optimize RNase H as it is expressed in all cells, so you can do functional biodistribution studies).
July 14, 2026 at 7:13 AM
This included extensive studies in non human primates (with MALAT1), but also in humans, for nusinersen, jacifusen and C9ORF72 treated individuals of different ages. The human studies can only be done when patients die, but I really appreciate that they/their families allowed these autopsies.
July 10, 2026 at 8:46 AM
Scope note: designed for whole-cell scRNA-seq, not snRNA-seq. High intronic content and MALAT1 enrichment mean something different in nuclei.

R package, Seurat object input, single wrapper function.

Paper + GitHub: doi.org/10.1038/s420... | github.com/lemonlyy755/...
ScQCenrich enables multi-metric quality control for single-cell RNA sequencing - Communications Biology
scQCenrich integrates canonical, nuclear-enrichment, and stress-related metrics to improve quality control in single-cell RNA sequencing while preserving biologically coherent cell populations.
doi.org
June 25, 2026 at 6:15 PM
The additions:
• Intronic fraction: nuclear/pre-mRNA enrichment as a direct proxy for cytoplasmic RNA loss
• MALAT1 enrichment: nuclear-retained lncRNA, orthogonal signal for nucleus-biased libraries
• Dissociation stress score: immediate-early + heat shock gene expression during processing
June 25, 2026 at 6:15 PM
Global deletion of Malat1 alters alcohol consumption in a sex-specific manner https://www.biorxiv.org/content/10.64898/2026.06.19.733448v1
June 24, 2026 at 11:16 PM
Global deletion of Malat1 alters alcohol consumption in a sex-specific manner https://www.biorxiv.org/content/10.64898/2026.06.19.733448v1
June 24, 2026 at 11:16 PM
#MedNews - Measuring urinary cell-derived lncRNA MALAT1 could improve the ability to differentiate between diabetic and nondiabetic #KidneyDisease in people with #Type2Diabetes.

👉️https://buff.ly/YaYAeoh
Non-coding RNA biomarker could help refine kidney disease diagnosis in type 2 diabetes
Measuring urinary cell-derived lncRNA MALAT1 could improve the ability to differentiate between diabetic and nondiabetic kidney disease in people with type 2 diabetes.
www.springermedicine.com
June 10, 2026 at 6:25 PM
RRIDs were included in this in RNA Biology paper. Thanks for making your methods matter! #accelerateopenscience #ReproducibleResearch #reproducibility
Evaluating Malat1-derived 3’end sequences for functional transgene expression in human cells using synthetic mRNA delivery
Read the full paper: Evaluating Malat1-derived 3’end sequences for functional transgene expression in human cells using synthetic mRNA delivery
doi.org
June 7, 2026 at 7:02 AM
RAS inhibitor Daraxonrasib binds to KRAS, HRAS, NRAS, CypA. We also studied drug sensitivity/resistance in NRAS before in the context of lncRNA MALAT1 doi.org/10.1038/s415...
CD44, one of the key proteins identified in network studies shares key downstream pathways with CypA.
June 2, 2026 at 2:49 AM
The authors included RRIDs in their in bioRxiv paper! Thanks for making your methods matter! #OpenScience #OpenResearch #STMpublishing
Deletion of the MALAT1 RNA 3’ end Promotes Transcript Decay, TALAM1 downregulation, and Inhibits Proliferation in Gastric and Breast Cancer Cells
Read the full paper: Deletion of the MALAT1 RNA 3’ end Promotes Transcript Decay, TALAM1 downregulation, and Inhibits Proliferation in Gastric and Breast Cancer Cells
doi.org
May 29, 2026 at 7:04 AM
Deletion of the MALAT1 RNA 3' end Promotes Transcript Decay, TALAM1 downregulation, and Inhibits Proliferation in Gastric and Breast Cancer Cells https://www.biorxiv.org/content/10.64898/2026.05.20.726613v1
May 23, 2026 at 3:17 AM
Deletion of the MALAT1 RNA 3' end Promotes Transcript Decay, TALAM1 downregulation, and Inhibits Proliferation in Gastric and Breast Cancer Cells https://www.biorxiv.org/content/10.64898/2026.05.20.726613v1
May 23, 2026 at 3:17 AM
Trick I've found useful for analyzing tumor RNA: zero out mitochondrial genes (including mt-tRNA), NUMTs, rRNA, rRNA pseudogenes, & MALAT1/NEAT1. Renormalize TPM (so values add up to 10^6).

Cleans up noise from sample degradation, enrichment method, &c

Does this have a name?
May 15, 2026 at 3:12 PM
Elevated Expression of MALAT1 Contributes to the Survival of Drug-Tolerant Persister Cells Following Targeted Therapy in Lung Adenocarcinoma https://www.biorxiv.org/content/10.64898/2026.05.07.723110v1
May 12, 2026 at 2:47 PM