A new FSLeyes is out, with improved support for tractograms - it is now possible to display 3D tractograms in 2D (ortho and lightbox) views. Details at open.win.ox.ac.uk/pages/fsl/fs.... Thanks to dipy and mrtrix3 for some example data sets. Also, hello bluesky!
February 25, 2025 at 9:38 AM
A new FSLeyes is out, with improved support for tractograms - it is now possible to display 3D tractograms in 2D (ortho and lightbox) views. Details at open.win.ox.ac.uk/pages/fsl/fs.... Thanks to dipy and mrtrix3 for some example data sets. Also, hello bluesky!
A new FSLeyes is out (v1.20.0) with support for .trx tractography files (thanks @arokem.org !) and MRtrix3 .mif files. Full details at open.oxcin.ox.ac.uk/pages/fsl/fs...
fsleyes release history — FSLeyes documentation
open.oxcin.ox.ac.uk
July 3, 2026 at 1:57 PM
A new FSLeyes is out (v1.20.0) with support for .trx tractography files (thanks @arokem.org !) and MRtrix3 .mif files. Full details at open.oxcin.ox.ac.uk/pages/fsl/fs...
it's been exciting to really begin learning DWI acquisition and analyses lately. after a probable false start with a different toolbox i may have settled on Mrtrix3. here's a great interview with one of its developers: ardc.edu.au/article/shap...
Shaping Research Software: An Interview with Dr Robert Smith | ARDC
We spoke with Dr Robert Smith, Senior Research Officer at The Florey Institute of Neuroscience and Mental Health. Rob is one of the developers of MRtrix3, a freely available software package for neuro...
ardc.edu.au
December 11, 2024 at 8:21 PM
it's been exciting to really begin learning DWI acquisition and analyses lately. after a probable false start with a different toolbox i may have settled on Mrtrix3. here's a great interview with one of its developers: ardc.edu.au/article/shap...
Just announced: The 7th official #MRtrix3 workshop to be held in Brisbane this year, supported by NIF
30 June, 2025 - 3 July, 2025
The University of Queensland, Brisbane
More information and workshop program: www.mrtrix.org/2025/02/03/m...
30 June, 2025 - 3 July, 2025
The University of Queensland, Brisbane
More information and workshop program: www.mrtrix.org/2025/02/03/m...
February 7, 2025 at 6:23 AM
Just announced: The 7th official #MRtrix3 workshop to be held in Brisbane this year, supported by NIF
30 June, 2025 - 3 July, 2025
The University of Queensland, Brisbane
More information and workshop program: www.mrtrix.org/2025/02/03/m...
30 June, 2025 - 3 July, 2025
The University of Queensland, Brisbane
More information and workshop program: www.mrtrix.org/2025/02/03/m...
Congrats to the finalists for the Eureka Prize for Excellence in Research Software, developing & maintaining MiniZinc, MRtrix3 and limma.
This prize recognises & celebrates those who develop & maintain software in Australia that underpins research & scientific discovery.
ardc.edu.au/article/fina...
This prize recognises & celebrates those who develop & maintain software in Australia that underpins research & scientific discovery.
ardc.edu.au/article/fina...
Finalists Announced for the 2024 ARDC Eureka Prize for Excellence in Research Software | ARDC
We congratulate the finalists for the 2024 ARDC Eureka Prize for Excellence in Research Software.
ardc.edu.au
July 31, 2024 at 5:58 AM
Congrats to the finalists for the Eureka Prize for Excellence in Research Software, developing & maintaining MiniZinc, MRtrix3 and limma.
This prize recognises & celebrates those who develop & maintain software in Australia that underpins research & scientific discovery.
ardc.edu.au/article/fina...
This prize recognises & celebrates those who develop & maintain software in Australia that underpins research & scientific discovery.
ardc.edu.au/article/fina...
#NewNProt: Structural connectome atlases using #MRtrix3 software to process #dMRI data bit.ly/4hdlMuZ
Structural connectome construction using constrained spherical deconvolution in multi-shell diffusion-weighted magnetic resonance imaging - Nature Protocols
This is a comprehensive protocol for the analysis of white matter diffusion-weighted magnetic resonance imaging data, which enables the representation of neuroanatomical atlases by using network-based...
bit.ly
February 26, 2025 at 1:51 PM
#NewNProt: Structural connectome atlases using #MRtrix3 software to process #dMRI data bit.ly/4hdlMuZ
Tool Tuesday 🛠️ Spotlight: MRtrix3. A powerful set of tools for diffusion tractography and connectome analysis. Find it on NITRC alongside the developer community. #MRtrix #Tractography #Neuroimaging
May 26, 2026 at 1:00 PM
Tool Tuesday 🛠️ Spotlight: MRtrix3. A powerful set of tools for diffusion tractography and connectome analysis. Find it on NITRC alongside the developer community. #MRtrix #Tractography #Neuroimaging
Important study comparing tractography filtering approaches - SIFT2 from MRtrix3 seems to finish on top. However, for binary results, including SIFT2 does not make sense IMO (as it is not designed to discard any streamlines)
doi.org/10.1016/j.ne...
doi.org/10.1016/j.ne...
September 19, 2023 at 6:54 AM
Important study comparing tractography filtering approaches - SIFT2 from MRtrix3 seems to finish on top. However, for binary results, including SIFT2 does not make sense IMO (as it is not designed to discard any streamlines)
doi.org/10.1016/j.ne...
doi.org/10.1016/j.ne...
January 22, 2024 at 10:44 AM
The intermediate steps can be adapted in diverse applications for region-of-interest tractography and the quantification of local white matter properties. The protocol covers the use of MRtrix3 and FSL software.
🧪🧠
Find the readcube link here:
🧪🧠
Find the readcube link here:
Structural connectome construction using constrained spherical deconvolution in multi-shell diffusion-weighted magnetic resonance imaging
Nature Protocols - This is a comprehensive protocol for the analysis of white matter diffusion-weighted magnetic resonance imaging data, which enables the representation of neuroanatomical atlases...
rdcu.be
March 19, 2025 at 6:04 AM
The intermediate steps can be adapted in diverse applications for region-of-interest tractography and the quantification of local white matter properties. The protocol covers the use of MRtrix3 and FSL software.
🧪🧠
Find the readcube link here:
🧪🧠
Find the readcube link here:
#Workshop: Seventh official #MRtrix3 Workshop registrations open
30 June - 3 July 2025
The University of Queensland, Brisbane, Australia
More info and register: www.mrtrix.org/2025/02/03/m...
30 June - 3 July 2025
The University of Queensland, Brisbane, Australia
More info and register: www.mrtrix.org/2025/02/03/m...
April 5, 2025 at 4:13 AM
#Workshop: Seventh official #MRtrix3 Workshop registrations open
30 June - 3 July 2025
The University of Queensland, Brisbane, Australia
More info and register: www.mrtrix.org/2025/02/03/m...
30 June - 3 July 2025
The University of Queensland, Brisbane, Australia
More info and register: www.mrtrix.org/2025/02/03/m...
MRtrix3 workshop first day ✅
June 30, 2025 at 7:05 AM
MRtrix3 workshop first day ✅