#PromethION
More compelling Promethion-powered research from Dr. W Mair & colleagues at Harvard - peroxisomes coordinate inter-organelle metabolism to support metabolic flexibility & longevity! 🧪 www.nature.com/articles/s43...
Peroxisomes orchestrate metabolic flexibility and longevity via an interorganelle cascade - Nature Aging
Sharma and colleagues show that, in Caenorhabditis elegans, age-associated decline in peroxisomal function causally impairs lipid mobilization, resulting in lipid droplet accumulation, metabolic infle...
www.nature.com
November 13, 2026 at 5:00 PM
More fascinating Promethion-powered science from Dr. A Domingos & colleagues at Oxford - leptin-sensitive cells around sympathetic nerves help protect mice against obesity! 🧪 www.nature.com/articles/s42...
The perineurium integrates leptin with its sympathetic outflow to protect against obesity - Nature Metabolism
Lepr+Adrb2+ sympathetic perineurial cells coordinate leptin signalling and sympathetic output to modulate energy expenditure, thermogenesis and body weight in male mice, independent of changes to food...
www.nature.com
November 12, 2026 at 5:06 PM
More intriguing Promethion-powered science from Dr. I Chio & colleagues at Columbia - an iron-dependent methionine redox pathway drives adipose browning & cancer cachexia! 🧪 www.nature.com/articles/s43...
An iron-regulated methionine redox axis governs adipose browning and cancer cachexia - Nature Cancer
Chio and colleagues describe an iron-dependent pathway with a role in the induction of cancer cachexia-linked events such as adipose browning and identify methionine sulfoxide reductase A as an import...
www.nature.com
November 13, 2026 at 5:02 PM
More intriguing Promethion-powered research from Dr. F Reimann & colleagues at Cambridge - distinct brain circuits mediate appetite responses to GIP receptor agonism vs antagonism! www.nature.com/articles/s42...
Distinct brain regions mediate regulation of food intake in response to GIPR agonism or antagonism - Nature Metabolism
The study employs region-specific knockout of the glucose-dependent insulinotropic polypeptide receptor (GIPR) in either the area postrema or hypothalamus of mice to determine how GIPR agonism and ant...
www.nature.com
November 12, 2026 at 5:07 PM
Can treatment with #CagriSema (CS), a cagrilintide–semaglutide combination medication, lead to lasting #WeightLoss?

Using data from Promethion #Metabolic Cages, scientists asked whether its effects are sustained during & after treatment.

buff.ly/uihDdMc

#Obesity #Diabetes #Metabolism #Physiology
https://www.sciencedirect.com/science/article/pii/S2212877826001481
www.sciencedirect.com
November 9, 2026 at 7:31 PM
Back in the lab we have been learning all the skills!

Within 2 weeks of starting her #PhD our Ellen has already performed tonnes of Revolugen FireMonkey DNA extractions & even popped on her 1st @nanoporetech.com #PromethION run!
October 29, 2026 at 1:05 PM
Brown #adipose tissue (BAT) lowers #cardiometabolic disease risk — but high-throughput profiling of human BAT has been a challenge.

With help from Promethion #Metabolic Cages, a Nature study combined #BigData & #AI to reveal BAT's benefits in 10,000+ patients.

buff.ly/eLJIyjt

#Obesity #Diabetes
Artificial intelligence-enabled clinical phenotyping of human brown fat - Nature
Artificial intelligence-enabled quantification and analyses of brown adipose tissue (BAT) activity uncover links between BAT and a healthier metabolic profile along with lower rates of psychiatric…
www.nature.com
October 26, 2026 at 5:45 PM
How is #adipocyte #thermogenesis regulated by #CircadianRhythm, temperature & diet?

With help from Sable Promethion Core #Metabolic Cages, a Science paper revealed the key integrative role of mitochondrial metabolite transporter SLC25A34.

www.science.org/doi/full/10....

#Physiology #Metabolism
https://www.science.org/doi/full/10.1126/science.adz4797
www.science.org
October 14, 2026 at 4:15 PM
Getting my own promethion flow cells - exciting times! #sequencing
October 8, 2026 at 9:55 AM
The conclusion of yet another highly successful metabolic phenotyping course by Sable Systems Europe! By discoverers, for discoverers. Featuring the Sable Systems Promethion Core system - the world leader in resolution, versatility & in-depth scientific expertise.
October 6, 2026 at 4:33 PM
Which pathways drive #adipose browning during #cachexia (#metabolic wasting linked to chronic illness)?

With help from Promethion Metabolic Cages, a Nature #Cancer study revealed a key regulatory iron-dependent pathway.

buff.ly/QBXoCkB

#Metabolism #Physiology #Oncology #IndirectCalorimetry
An iron-regulated methionine redox axis governs adipose browning and cancer cachexia - Nature Cancer
Chio and colleagues describe an iron-dependent pathway with a role in the induction of cancer cachexia-linked events such as adipose browning and identify methionine sulfoxide reductase A as an…
www.nature.com
September 29, 2026 at 6:45 PM
How do #immune cells and #inflammation contribute to #obesity?

With help from Promethion Core #Metabolic Cages, scientists characterized #metabolic health and #obesity risk in #MRP8Cre transgenic mice, which are used to investigate #neutrophil biology.

buff.ly/1CpsVPN

#Metabolism #Physiology
<i>MRP8‐Cre</i> Transgenic Mice Are Resistant to Weight Gain and Diet‐Induced Obesity Independently of Neutrophils
The MRP8Cre mouse model is frequently used to investigate the biology of neutrophils. This study reports that MRP8Cre transgenic have a lower body weight and improved metabolic health, especially…
onlinelibrary.wiley.com
September 25, 2026 at 4:15 PM
Just looked at PromethION hardware requirements and cannot stop thinking about one thing - these requirements are extremely high (almost ridiculous) just because ONT pushes live data analysis & basecalling during the sequencing.
However, this is unnecessary & makes such a system way more expensive.
September 24, 2026 at 5:35 PM
How do visual & odor cues of food trigger #feeding? With help from Promethion #Metabolic Cages, scientists identified a #neural circuit linking food-related visual activity in #SuprachiasmaticNucleus (#SCN) to feeding control in the ventromedial #hypothalamus (#VMH).

buff.ly/oWmSdh5

#Neuroscience
A neural circuit of food sight-promoted feeding and contextual memory in mice - Nature Communications
Feeding can be regulated by sensory cues. This study identifies a multi-layer circuit that mediates food sight-promoted feeding and food-related memory in mice.
www.nature.com
September 18, 2026 at 4:15 PM
Could #metabolic changes be an early warning sign for #Alzheimers disease (AD)?

With help from Sable Promethion Metabolic Cages, scientists revealed shifts in metabolic function prior to cognitive decline in a novel mouse model (hAβ-KI) of sporadic AD.

buff.ly/zia7krG

#Metabolism #Aging #Ageing
Metabolic Shifts Precede Cognitive Decline in the Male hAß‐KI Alzheimer's Mouse Model
A major barrier in Alzheimer's disease (AD) research is the lack of animals that recapitulate sporadic AD. The humanized amyloid-beta knock-in mice (hAß-KI) exhibit age-dependent cognitive decline…
faseb.onlinelibrary.wiley.com
September 16, 2026 at 1:06 AM
Julie just completed sequencing run 200 on our PromethION @puckerlab.bsky.social . Time to celebrate numerous successful plant genomics projects and to look for new challenges!
www.izmb.uni-bonn.de/en/pbb/news#...
#PlantGenomics #Bioinformatics #LongReads
September 14, 2026 at 2:23 PM
Functional chimeric mRNAs encode proteins in mammalian immunity
RNA libraries were prepared using the Direct RNA Sequencing kit (SQK-RNA002). Sequencing was performed on the Oxford Nanopore PromethION P24 sequencer using the FLO-PRO002 flow cell. Sequencing was performed using MinKNOW v.22.03.4 and MinKNOW Core v.5.0.0 with a pore scan frequency of 1.5 h, active channel selection set to on and reserved pores set to on. Libraries were run for 72 h. Basecalling was performed using Bream v.7.0.9 and Guppy v.6.0.7. Data processing was performed on an Ubuntu 20.04 system. Sequencing was performed by the BioMicro Center at Massachusetts Institute of Technology. Computational analysis of long-read direct RNA-seq data Individual passing FASTQ files from the same sample were merged to generate a single FASTQ file per sample. Except in the case of JAFFAL17 v.2.2 and v.2.3, all mouse data analyses were performed using reference files from GENCODE58 release M28 (GRCm39), and all human data analyses were performed using reference files from GENCODE Release 43 (GRCh38.p13). For JAFFAL, matched reference files were downloaded from the UCSC genome browser59 and prepared using the instructions provided on the JAFFAL wiki (https://github.com/Oshlack/JAFFA/wiki). Genomic alignments for NanoPlot60 v.1.42.0 were performed using Minimap261 v.2.24 with the parameters -ax splice -uf -k14 and aligned reads were processed...
www.nature.com
September 2, 2026 at 7:38 PM
Clinical measurement of #GLP1Ra #gastrointestinal side effects can involve invasive procedures — could there be a better way? With help from Promethion #Metabolic Cages, scientists developed a noninvasive measure of oral–cecal transit time based on #13C-labeled mannitol #metabolism.

buff.ly/5kEFup9
A noninvasive 13C-mannitol breath test to monitor semaglutide treatment-induced delayed oral-cecal transit in mice | American Journal of Physiology-Endocrinology and Metabolism | American Physiological Society
Glucagon-like peptide-1 receptor agonists (GLP-1RAs), such as semaglutide, are highly effective treatments for obesity and type 2 diabetes but are often associated with gastrointestinal side effects…
journals.physiology.org
September 1, 2026 at 7:01 PM
What is the role of #epigenetic memory in #obesity? With help from Promethion #Metabolic Cages, scientists showed how adipose transcriptional memory in the #TGF-β1-#asprosin pathway contributes to obesity persistence within & across generations.

buff.ly/CJAfo7B

#Metabolism #Physiology #Epigenetics
Adipose TGFβ-asprosin memory promotes obesity relapse and offspring obesity susceptibility
Kim et al. show that obesity-associated TGF-β1 establishes a persistent adipocyte transcriptional memory that sustains asprosin production. In mice, this persistent hormonal state promotes weight…
www.cell.com
August 21, 2026 at 5:01 PM
Aww look Santa stopped by early!
November 29, 2023 at 4:01 PM
Wow! Ive had the privilege of doing shotgun metagenomics on soil sample using PromethION flow cells, on at least 20 flow cells, never have I ever got pore occupancy this good.
February 4, 2025 at 12:18 PM
Germinating wild and cultivated barley for HMW DNA extraction and @nanoporetech.com adaptive sequencing. Acrospire harvesting soon. #barley #hmwdna #nanopore #adaptivesequencing #promethion
May 29, 2025 at 8:39 AM
The motivation to develop this algorithm came from the inability of other algorithms to process recent large datasets (10-100M reads) from Revio or PromethION machines.
May 8, 2025 at 1:04 PM
Depends of course a bit on (length/abundance) repetitive elements, heterozygosity and your DNA (quality and length) to get to T2T; for a usable draft for sure though. Even though pricewise 2 Minion is about a Promethion cell.
January 20, 2025 at 1:27 PM
Library prep is straightforward, except for in situ chromatin conformation capture. I lack experience with HiC because we used to outsource it before moving to PoreC. Since PoreC yields about 40% uniquely mapped reads, one PromethION flow cell provides enough output to scaffold even complex genomes.
March 11, 2026 at 8:14 AM