Interrogating the Escherichia coli Epitranscriptome Via CRISPR Interference and Nanopore Native RNA Sequencing onlinelibrary.wiley.com/doi/10.1002/...
Interrogating the <i>Escherichia coli</i> Epitranscriptome Via CRISPR Interference and Nanopore Native RNA Sequencing
Epitranscriptomics is understudied in bacteria but has the ability to modulate antimicrobial resistance, virulence and pathogenicity. Pitt et al. implement two cutting-edge techniques: CRISPR interfe...
onlinelibrary.wiley.com
October 31, 2026 at 8:48 PM
Interrogating the Escherichia coli Epitranscriptome Via CRISPR Interference and Nanopore Native RNA Sequencing onlinelibrary.wiley.com/doi/10.1002/...
Cryo-EM structure of a protein nanopore reveals lipid acyl chains as integral components pubmed.ncbi.nlm.nih.gov/42962025/ #cryoem
October 31, 2026 at 8:58 PM
Cryo-EM structure of a protein nanopore reveals lipid acyl chains as integral components pubmed.ncbi.nlm.nih.gov/42962025/ #cryoem
Very happy to share that our work (beautifully led by @miemonti.bsky.social and #Hasan) is finally out! 😄We find that tRNAs engaged in actively translating ribosomes significantly differ from the 'total' pool available in the cell, specially upon stress! www.nature.com/articles/s41...
Selective profiling of translationally active tRNAs and their dynamics under stress - Nature Methods
tRIBO-seq distinguishes between ribosome-associated tRNAs and total tRNAs using nanopore sequencing, thus revealing their potentially distinct abundance, modification and fragmentation patterns in var...
www.nature.com
November 2, 2026 at 5:17 PM
Very happy to share that our work (beautifully led by @miemonti.bsky.social and #Hasan) is finally out! 😄We find that tRNAs engaged in actively translating ribosomes significantly differ from the 'total' pool available in the cell, specially upon stress! www.nature.com/articles/s41...
Investigation of Shielding Strategies to Mitigate Noise in Nanopore Recordings https://pubmed.ncbi.nlm.nih.gov/42921128/
November 2, 2026 at 9:48 AM
Investigation of Shielding Strategies to Mitigate Noise in Nanopore Recordings https://pubmed.ncbi.nlm.nih.gov/42921128/
Nanopore Sequencing for Epigenetic Decoding: Applications, Analytical Constraints, and Translational Prospects https://pubmed.ncbi.nlm.nih.gov/42941945/
November 2, 2026 at 8:53 AM
Nanopore Sequencing for Epigenetic Decoding: Applications, Analytical Constraints, and Translational Prospects https://pubmed.ncbi.nlm.nih.gov/42941945/
Dynamic Metal-Organic Tweezer Enables High-Resolution Nanopore Analysis of Steroid Hormones https://pubmed.ncbi.nlm.nih.gov/42937962/
November 2, 2026 at 9:04 AM
Dynamic Metal-Organic Tweezer Enables High-Resolution Nanopore Analysis of Steroid Hormones https://pubmed.ncbi.nlm.nih.gov/42937962/
Cryo-EM structure of a protein nanopore reveals lipid acyl chains as integral components https://pubmed.ncbi.nlm.nih.gov/42962025/
November 2, 2026 at 8:42 AM
Cryo-EM structure of a protein nanopore reveals lipid acyl chains as integral components https://pubmed.ncbi.nlm.nih.gov/42962025/
Programmable Multisite Recognition Enables Amplification-Free Nanopore Detection of Mycobacterium tuberculosis in Sputum and Plasma https://pubmed.ncbi.nlm.nih.gov/42917048/
November 2, 2026 at 10:21 AM
Programmable Multisite Recognition Enables Amplification-Free Nanopore Detection of Mycobacterium tuberculosis in Sputum and Plasma https://pubmed.ncbi.nlm.nih.gov/42917048/
Probe-Free, Primer-Programmed Amplicon Encoding Enables Nanopore-Based Multiplex Detection With Deep Learning Decoding https://pubmed.ncbi.nlm.nih.gov/42921872/
November 2, 2026 at 9:37 AM
Probe-Free, Primer-Programmed Amplicon Encoding Enables Nanopore-Based Multiplex Detection With Deep Learning Decoding https://pubmed.ncbi.nlm.nih.gov/42921872/
Not all biological answers lie in the DNA sequence. In this knowledge exchange, we explore how gold-standard Oxford Nanopore methylation sequencing reveals hidden insights that traditional methods miss—all from a single run.
https://bit.ly/4j7E45j
https://bit.ly/4j7E45j
November 2, 2026 at 2:22 PM
Not all biological answers lie in the DNA sequence. In this knowledge exchange, we explore how gold-standard Oxford Nanopore methylation sequencing reveals hidden insights that traditional methods miss—all from a single run.
https://bit.ly/4j7E45j
https://bit.ly/4j7E45j
Improving All-Atom Molecular Dynamics Models for Quantitative Prediction of Nanopore Blockade Current https://pubmed.ncbi.nlm.nih.gov/42917281/
November 2, 2026 at 10:10 AM
Improving All-Atom Molecular Dynamics Models for Quantitative Prediction of Nanopore Blockade Current https://pubmed.ncbi.nlm.nih.gov/42917281/
📝 Nanopore RNA sequencing reveals new patterns associated with RNA modifications
✍️ RNA-Seq Blog
✍️ RNA-Seq Blog
Nanopore RNA sequencing reveals new patterns associated with RNA modifications
Article de RNA-Seq Blog
www.rna-seqblog.com
October 30, 2026 at 7:55 AM
📝 Nanopore RNA sequencing reveals new patterns associated with RNA modifications
✍️ RNA-Seq Blog
✍️ RNA-Seq Blog
The Netherlands is transforming the genomic antimicrobial resistance (AMR) surveillance by integrating resistance plasmid analysis using “PlasmidNL” to monitor plasmid outbreaks and spread. AND YOU CAN USE IT TOO!
#AMR #Genomics #surveillance #Nanopore #plasmids #CPE #MRSA #PlasmidOutbreaks #ONT
#AMR #Genomics #surveillance #Nanopore #plasmids #CPE #MRSA #PlasmidOutbreaks #ONT
October 30, 2026 at 6:54 AM
The Netherlands is transforming the genomic antimicrobial resistance (AMR) surveillance by integrating resistance plasmid analysis using “PlasmidNL” to monitor plasmid outbreaks and spread. AND YOU CAN USE IT TOO!
#AMR #Genomics #surveillance #Nanopore #plasmids #CPE #MRSA #PlasmidOutbreaks #ONT
#AMR #Genomics #surveillance #Nanopore #plasmids #CPE #MRSA #PlasmidOutbreaks #ONT
Interested in Nanopore metabarcoding? Not everything is as easy as it seems 🤭.
Have a look at this post written by Dr Verónica Rojo, to learn more about long-read metabarcoding and how we have developed and validated our Nanopore metabarcoding workflows 🧬🧬.
www.allgenetics.eu/dna-metabarc...
Have a look at this post written by Dr Verónica Rojo, to learn more about long-read metabarcoding and how we have developed and validated our Nanopore metabarcoding workflows 🧬🧬.
www.allgenetics.eu/dna-metabarc...
DNA metabarcoding with Nanopore sequencing | AllGenetics
Our expertise in high-throughput sequencing and bioinformatics ensures that we understand your research needs.
www.allgenetics.eu
October 27, 2026 at 5:55 PM
Interested in Nanopore metabarcoding? Not everything is as easy as it seems 🤭.
Have a look at this post written by Dr Verónica Rojo, to learn more about long-read metabarcoding and how we have developed and validated our Nanopore metabarcoding workflows 🧬🧬.
www.allgenetics.eu/dna-metabarc...
Have a look at this post written by Dr Verónica Rojo, to learn more about long-read metabarcoding and how we have developed and validated our Nanopore metabarcoding workflows 🧬🧬.
www.allgenetics.eu/dna-metabarc...
Digital molecular kinetics enabled by large-scale nanopore arrays for multidimensional biophysical profiling https://www.biorxiv.org/content/10.64898/2026.10.28.762428v1
October 29, 2026 at 1:48 PM
Digital molecular kinetics enabled by large-scale nanopore arrays for multidimensional biophysical profiling https://www.biorxiv.org/content/10.64898/2026.10.28.762428v1
I've written up how I do it for nanopore sequencing, which is quite a cost-efficient way to do bulk cDNA sequencing:
dx.doi.org/10.17504/pro...
[this was before more established labs had their own tools, like oarfish and bambu]
dx.doi.org/10.17504/pro...
[this was before more established labs had their own tools, like oarfish and bambu]
Preparing Reads for Stranded Mapping V.7
Preparing Reads for Stranded Mapping. This protocol is for preparing long reads for stranded mapping,. Read full protocol, steps, and materials on protocols.io
dx.doi.org
October 31, 2026 at 1:07 AM
I've written up how I do it for nanopore sequencing, which is quite a cost-efficient way to do bulk cDNA sequencing:
dx.doi.org/10.17504/pro...
[this was before more established labs had their own tools, like oarfish and bambu]
dx.doi.org/10.17504/pro...
[this was before more established labs had their own tools, like oarfish and bambu]
Digital molecular kinetics enabled by large-scale nanopore arrays for multidimensional biophysical profiling https://www.biorxiv.org/content/10.64898/2026.10.28.762428v1
October 29, 2026 at 1:48 PM
Digital molecular kinetics enabled by large-scale nanopore arrays for multidimensional biophysical profiling https://www.biorxiv.org/content/10.64898/2026.10.28.762428v1
Do you fancy taking to the stage at #nanoporeconf to share your latest Oxford Nanopore-based research? Be sure to submit your abstract before 15th January to be in with a chance!
Submit your abstract here: https://bit.ly/4ij5iF6
Submit your abstract here: https://bit.ly/4ij5iF6
November 2, 2026 at 6:59 PM
Do you fancy taking to the stage at #nanoporeconf to share your latest Oxford Nanopore-based research? Be sure to submit your abstract before 15th January to be in with a chance!
Submit your abstract here: https://bit.ly/4ij5iF6
Submit your abstract here: https://bit.ly/4ij5iF6
We reveal a previously unexplored dimension of cellular dynamics by harnessing the power of long-read nanopore sequencing to… — a paper published by @halil_zielinski and reproduced by 4 other AI researchers, no humans in the loop.
https://6ic.com/explore/discoveries
#AI #research #paper
https://6ic.com/explore/discoveries
#AI #research #paper
November 1, 2026 at 8:40 AM
We reveal a previously unexplored dimension of cellular dynamics by harnessing the power of long-read nanopore sequencing to… — a paper published by @halil_zielinski and reproduced by 4 other AI researchers, no humans in the loop.
https://6ic.com/explore/discoveries
#AI #research #paper
https://6ic.com/explore/discoveries
#AI #research #paper
It's getting real! 📬 Our first #BFNM2027 postcards have arrived!
27–30 September 2027 | Freiburg, Germany
Our Scientific Committee is busy planning four days of nanopore science.
Early-bird registration opens in January. See you in Freiburg!
nanodiag.de/bfnm2027
27–30 September 2027 | Freiburg, Germany
Our Scientific Committee is busy planning four days of nanopore science.
Early-bird registration opens in January. See you in Freiburg!
nanodiag.de/bfnm2027
October 30, 2026 at 7:11 AM
It's getting real! 📬 Our first #BFNM2027 postcards have arrived!
27–30 September 2027 | Freiburg, Germany
Our Scientific Committee is busy planning four days of nanopore science.
Early-bird registration opens in January. See you in Freiburg!
nanodiag.de/bfnm2027
27–30 September 2027 | Freiburg, Germany
Our Scientific Committee is busy planning four days of nanopore science.
Early-bird registration opens in January. See you in Freiburg!
nanodiag.de/bfnm2027
Genomic in vitro transcription and Nanopore direct RNA sequencing of a human B-Lymphocyte cell line
GigaScience · Tzadikario et al.
doi.org/10.1093/gigascience/giag098
#RNAsky #RNAmods
GigaScience · Tzadikario et al.
doi.org/10.1093/gigascience/giag098
#RNAsky #RNAmods
Genomic in vitro transcription and Nanopore direct RNA sequencing of a human B-Lymphocyte cell line
GigaScience · Tzadikario T, Akeson S, Dorer S, Esfahani NG, Stein AJ, Kakhaki PD, Choudhary U, Amar K, Jain M.
doi.org
October 28, 2026 at 12:11 AM
Genomic in vitro transcription and Nanopore direct RNA sequencing of a human B-Lymphocyte cell line
GigaScience · Tzadikario et al.
doi.org/10.1093/gigascience/giag098
#RNAsky #RNAmods
GigaScience · Tzadikario et al.
doi.org/10.1093/gigascience/giag098
#RNAsky #RNAmods
Single molecule nanopore sensing across a liquid-solid interface https://www.biorxiv.org/content/10.64898/2026.10.24.752301v1
October 25, 2026 at 5:46 AM
Single molecule nanopore sensing across a liquid-solid interface https://www.biorxiv.org/content/10.64898/2026.10.24.752301v1
Single molecule nanopore sensing across a liquid-solid interface https://www.biorxiv.org/content/10.64898/2026.10.24.752301v1
October 25, 2026 at 5:46 AM
Single molecule nanopore sensing across a liquid-solid interface https://www.biorxiv.org/content/10.64898/2026.10.24.752301v1