#RNAfolding
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narjournal.bsky.social
⭐ #NARBreakthrough ⭐
How do #IStrons juggle 3 competing functions from a single sequence? #Newstudy reveals an RNA-level #tug-of-war between #self-preservation and #hostprotection, shaped by #RNAfolding 🔬Read the article here: doi.org/10.1093/nar/...
August 28, 2026 at 2:46 PM
evbc.bsky.social
In our December #virusesinsilico lecture, Naeim Moafinejad will present SimRNAweb v2.0, a web server for RNA folding simulations and 3D structure modeling.
#RNAfolding #RNAviruses
Registration is free: evbc.uni-jena.de/events/virus...
#VirusBioinformatics
December 4, 2024 at 3:32 PM
fraor.bsky.social
Today I tested my own method for RNA analysis. This method can serve as an early indicator of RNA stability, even before detailed 3D modeling.

#Bioinformatics #ComputationalBiology #StructuralBiology #MolecularBiology #RNA #Biotechnology #LifeSciences #RNAresearch #RNAstructure #RNAfolding #LLM
September 24, 2025 at 5:22 AM
epsteinweb.bsky.social
Parts 1-2/2 — EFTA01091387.jpg
#epsteinweb #efta01091387
https://epsteinweb.org
Available in the iOS app store now!
https://apps.apple.com/us/app/epstein-web/id6758880661
EFTA01091385 | EFTA01091387 encephalomyelitis and therapeutic intervention identified by highthroughput sequencing, in preparation for submission to J Immunol. 5. Thomas N, Heather J, Ndifon W, Shawe-Taylor J, Chaint B. Decombinator: A tool for fast, efficient gene assignment in T cell receptor sequences using a finite state machine. Bioinformatics 2013; 29:542-550. 6. Baruch* K, Ron-Harel' N, Gal* H, Shifrut E, Ndifon W, Deckowska A, Mirlas-Neisberg N, Cardon M, Vaknin I, Cahalon L, Berkutzki T, Mattson MP, Gomez-Pinilla F, Friedman N, Schwartzt M. CNSspecific immunity at the choroid plexus shifts towards destructive The-inflammation in brain aging. Proceedings of the National Academy of Sciences USA 2013; 110:2264-2269. 7. Ndifon* W, Gal* H, Shifrut E, Aharoni R, Waysbort N, Yissachar N, Reich-Zeliger S, Arnon R, Friedmant N. Chromatin conformation governs T-cell receptor JP gene segment usage. Proceedings of the National Academy of Sciences USA 2012; 109:15865-15870. 8. Ndifon W. New methods for analyzing serological data with applications to influenza surveillance. Influenza and Other Respiratory Viruses 2011; 5:206-212. For supplementary information, see http://anciv.orgiabs/n09.2202. 9. Nara PL, Tobin GJ, Chaudhuri AJ, Trujillo JD, Lin G, Cho MW, Levint SA, Ndifon W, Wingreen NS. How can vaccines against influenza and other viral diseases be made more effective? PLoS Biology 2010; 8:e1000571. 10. Ndifont W, Wingreent NS, Levint SA. Differential neutralization efficiency of hemagglutinin epitopes, antibody interference, and the design of influenza vaccines. Proceedings of the National Academy of Sciences USA 2009; 106:8701-8706. II. Ndifont W, Dushoff J, Levin SA. On the use of hemagglutinationinhibition for influenza surveillance: Surveillance data are predictive of influenza vaccine effectiveness. Vaccine 2009; 27:2447-2452. 12. Ndifon W. A NetLogo-based agent-oriented simulation of HIV immunodynamics. In Yilmaz L (ed.), Proceedings of the AgentDirected Simulation Symposium. SCS Press, USA, ISBN: 1-56555291-1, 2005, pp. 193-197. RNAfolding, evolution 13. Ndifont W, Dushoff J. Finding attractors on a folding energy landscape. In Liu LA, Wei D, Li Y (eds.) Handbook of Research on Computational and Systems Biology. Igi-Global, USA, 2011. 14. Ndifont W, Plotkin JB, Dushoff J. On the accessibility of adaptive phenotypes of a bacterial metabolic network. PLoS Computational Biology 2009; 5:e1000472. 15. Nkwanta A, Ndifont W. A contact-waiting-time metric and RNA folding rates. FEBS Letters 2009; 583:2392-2394. 16. Ndifont W, Nkwanta A. An RNA foldability metric; implications for the design of rapidly foldable RNA sequences. Biophysical Chemistry 2006; 120:237-239. 17. Ndifon W. A complex adaptive systems approach to the kinetic folding of RNA. Biosystems 2005; 82:257-265. Is. Ndifont W, Nkwanta A. An agent-oriented simulation of RNA folding EFTA01091387
May 9, 2026 at 4:15 AM
fabienplisson.bsky.social
What a great week networking with talented statisticians and computational biologists during a workshop in beautiful Oaxaca @CMO_oaxaca
#Genomics #ProteinEngineering #RNAFolding #DataScience #MachineLearning #ArtificialIntelligence
December 13, 2024 at 11:02 AM