"A Policy-Driven Framework for Genomic Surveillance: Translating Data into Public Health Action"! 🧬📊
Talked about how data-driven policies can enhance public health impact. #GenomicSurveillance #PublicHealth #APTR2025 @APTRupdate
Talked about how data-driven policies can enhance public health impact. #GenomicSurveillance #PublicHealth #APTR2025 @APTRupdate
March 11, 2025 at 3:37 AM
"A Policy-Driven Framework for Genomic Surveillance: Translating Data into Public Health Action"! 🧬📊
Talked about how data-driven policies can enhance public health impact. #GenomicSurveillance #PublicHealth #APTR2025 @APTRupdate
Talked about how data-driven policies can enhance public health impact. #GenomicSurveillance #PublicHealth #APTR2025 @APTRupdate
Genomics isn’t just solving #Outbreaks, it’s stopping them before they escalate
HOT take from @natrevmicro.nature.com: If you only sequence #MDR outbreaks, you’re already late. Consider susceptible strains & #Plasmids
#GenomicSurveillance #InfectionControl
🖥️🧬💻
#AcademicSky
#MicroSky
#IDSky
🧪🧫🦠
HOT take from @natrevmicro.nature.com: If you only sequence #MDR outbreaks, you’re already late. Consider susceptible strains & #Plasmids
#GenomicSurveillance #InfectionControl
🖥️🧬💻
#AcademicSky
#MicroSky
#IDSky
🧪🧫🦠
New online! Genome sequencing for prevention of health-care-associated bacterial infections
Genome sequencing for prevention of health-care-associated bacterial infections
Nature Reviews Microbiology, Published online: 10 November 2025; doi:10.1038/s41579-025-01254-yMicrobial whole-genome sequencing is an important element of health-care-associated infection (HAI) prevention strategies. Focusing on specific high-priority antibiotic-resistant bacterial pathogens, this Review outlines the epidemiology and microbiology of HAIs and discusses the role of whole-genome sequencing in HAI prevention and surveillance.
www.nature.com
November 11, 2025 at 10:27 AM
Genomics isn’t just solving #Outbreaks, it’s stopping them before they escalate
HOT take from @natrevmicro.nature.com: If you only sequence #MDR outbreaks, you’re already late. Consider susceptible strains & #Plasmids
#GenomicSurveillance #InfectionControl
🖥️🧬💻
#AcademicSky
#MicroSky
#IDSky
🧪🧫🦠
HOT take from @natrevmicro.nature.com: If you only sequence #MDR outbreaks, you’re already late. Consider susceptible strains & #Plasmids
#GenomicSurveillance #InfectionControl
🖥️🧬💻
#AcademicSky
#MicroSky
#IDSky
🧪🧫🦠
Top #SARSCoV2 sequencing regions (Mar–Apr 2025):
New York – 23.3%, California – 8.4%, Ontario – 7.2%, Queensland – 4.5%, Illinois – 3.7%
NY leads globally...we watch it as a bellwether for emerging variants. #GenomicSurveillance #COVID19
5/n
New York – 23.3%, California – 8.4%, Ontario – 7.2%, Queensland – 4.5%, Illinois – 3.7%
NY leads globally...we watch it as a bellwether for emerging variants. #GenomicSurveillance #COVID19
5/n
April 13, 2025 at 5:58 PM
Top #SARSCoV2 sequencing regions (Mar–Apr 2025):
New York – 23.3%, California – 8.4%, Ontario – 7.2%, Queensland – 4.5%, Illinois – 3.7%
NY leads globally...we watch it as a bellwether for emerging variants. #GenomicSurveillance #COVID19
5/n
New York – 23.3%, California – 8.4%, Ontario – 7.2%, Queensland – 4.5%, Illinois – 3.7%
NY leads globally...we watch it as a bellwether for emerging variants. #GenomicSurveillance #COVID19
5/n
Outstanding work. Thanks, Henry and Chris! This was an excellent collaborative effort that yielded fascinating results. #genomicsurveillance
December 12, 2024 at 9:21 PM
Outstanding work. Thanks, Henry and Chris! This was an excellent collaborative effort that yielded fascinating results. #genomicsurveillance
Our CSO @pathogenomenick.bsky.social is finishing off #MNGPopUp with a fantastic talk on metagenomic pathogen surveillance 👀 @articnetwork.bsky.social
#MicroSky #MicrobialGenomics #Metagenomics #InfectiousDiseases #GenomicSurveillance #PathogenDetection #Bioinformatics
#MicroSky #MicrobialGenomics #Metagenomics #InfectiousDiseases #GenomicSurveillance #PathogenDetection #Bioinformatics
July 3, 2025 at 3:33 PM
Our CSO @pathogenomenick.bsky.social is finishing off #MNGPopUp with a fantastic talk on metagenomic pathogen surveillance 👀 @articnetwork.bsky.social
#MicroSky #MicrobialGenomics #Metagenomics #InfectiousDiseases #GenomicSurveillance #PathogenDetection #Bioinformatics
#MicroSky #MicrobialGenomics #Metagenomics #InfectiousDiseases #GenomicSurveillance #PathogenDetection #Bioinformatics
1/
Still a great intro to genomic surveillance:
cambiotraining.github.io/sars-cov-2-g...
#Trinobia #Bioinformatics #Genomics #NGS #GenomicSurveillance #Phylogenetics #Nextstrain #VariantCalling #ComputationalBiology #LifeSciences #Biotech #Research #Science #DataScience #MolecularBiology
cambiotraining.github.io/sars-cov-2-g...
#Trinobia #Bioinformatics #Genomics #NGS #GenomicSurveillance #Phylogenetics #Nextstrain #VariantCalling #ComputationalBiology #LifeSciences #Biotech #Research #Science #DataScience #MolecularBiology
SARS Genomic Surveillance
cambiotraining.github.io
June 7, 2026 at 6:05 PM
1/
Still a great intro to genomic surveillance:
cambiotraining.github.io/sars-cov-2-g...
#Trinobia #Bioinformatics #Genomics #NGS #GenomicSurveillance #Phylogenetics #Nextstrain #VariantCalling #ComputationalBiology #LifeSciences #Biotech #Research #Science #DataScience #MolecularBiology
cambiotraining.github.io/sars-cov-2-g...
#Trinobia #Bioinformatics #Genomics #NGS #GenomicSurveillance #Phylogenetics #Nextstrain #VariantCalling #ComputationalBiology #LifeSciences #Biotech #Research #Science #DataScience #MolecularBiology
We are excited to join the @who.int-led International Pathogen Surveillance Network (IPSN)! It brings together global actors to strengthen #GenomicSurveillance of pathogens and improve public health responses worldwide.
🟠 https://www.who.int/initiatives/international-pathogen-surveillance-network
🟠 https://www.who.int/initiatives/international-pathogen-surveillance-network
March 11, 2025 at 6:01 AM
We are excited to join the @who.int-led International Pathogen Surveillance Network (IPSN)! It brings together global actors to strengthen #GenomicSurveillance of pathogens and improve public health responses worldwide.
🟠 https://www.who.int/initiatives/international-pathogen-surveillance-network
🟠 https://www.who.int/initiatives/international-pathogen-surveillance-network
Learn how CDC tracks emerging variants through the pipeline for #genomicsurveillance.
www.cdc.gov/coronavirus/...
www.cdc.gov/coronavirus/...
January 12, 2024 at 11:20 PM
Learn how CDC tracks emerging variants through the pipeline for #genomicsurveillance.
www.cdc.gov/coronavirus/...
www.cdc.gov/coronavirus/...
In 2020, Honduras had no sequencing capacity. Now, with APHL’s support, its national lab is training others across the region in viral and bacterial sequencing—building expertise and strengthening health systems. Read more: buff.ly/sOPFeDN #publichealth #globalhealth #genomicsurveillance
April 13, 2025 at 3:37 PM
In 2020, Honduras had no sequencing capacity. Now, with APHL’s support, its national lab is training others across the region in viral and bacterial sequencing—building expertise and strengthening health systems. Read more: buff.ly/sOPFeDN #publichealth #globalhealth #genomicsurveillance
Today ARTIC provided bioinformatics and phylogenetics training to an #mpox workshop hosted by INRB in DRC, with participants from 8 countries
#genomicsurveillance #molecularepidemiology #pathogen #pathogensurviellance #bioinformatics #epidemiology #virus #outbreak #clinicalvirology #sequencing
#genomicsurveillance #molecularepidemiology #pathogen #pathogensurviellance #bioinformatics #epidemiology #virus #outbreak #clinicalvirology #sequencing
August 23, 2024 at 2:03 PM
Today ARTIC provided bioinformatics and phylogenetics training to an #mpox workshop hosted by INRB in DRC, with participants from 8 countries
#genomicsurveillance #molecularepidemiology #pathogen #pathogensurviellance #bioinformatics #epidemiology #virus #outbreak #clinicalvirology #sequencing
#genomicsurveillance #molecularepidemiology #pathogen #pathogensurviellance #bioinformatics #epidemiology #virus #outbreak #clinicalvirology #sequencing
#H5N1 #InfluenzaA #OneHealth #Reassortment #ViralEvolution #GenomicSurveillance
References:
Carrazco-Montalvo et al., 2026. doi.org/10.3389/fmic...
Huang et al., 2026. doi.org/10.1016/j.is...
13/14
References:
Carrazco-Montalvo et al., 2026. doi.org/10.3389/fmic...
Huang et al., 2026. doi.org/10.1016/j.is...
13/14
Frontiers | Genomic characterization of highly pathogenic avian influenza A(H5N1) clade 2.3.4.4b into wild seabirds from coastal Ecuador
IntroductionHighly pathogenic avian influenza A(H5N1) clade 2.3.4.4b has spread widely across South America, but its genomic diversity and patterns of introd...
doi.org
September 27, 2026 at 9:14 PM
#H5N1 #InfluenzaA #OneHealth #Reassortment #ViralEvolution #GenomicSurveillance
References:
Carrazco-Montalvo et al., 2026. doi.org/10.3389/fmic...
Huang et al., 2026. doi.org/10.1016/j.is...
13/14
References:
Carrazco-Montalvo et al., 2026. doi.org/10.3389/fmic...
Huang et al., 2026. doi.org/10.1016/j.is...
13/14
More on Dengue in Italy:
#genomicsurveillance
#genomicsurveillance
#GenomicSurveillance of #DengueVirus in Italy reveals local transmission and viral adaptations linked to human and vector interactions.
#Arbovirus #VirusEvolution #ClimateChange
📄 doi.org/10.1080/2222...
EVBC👤: Cesare Gruber
#Arbovirus #VirusEvolution #ClimateChange
📄 doi.org/10.1080/2222...
EVBC👤: Cesare Gruber
Genetic and structural characterization of dengue virus involved in the 2023 autochthonous outbreaks in central Italy
Dengue virus (DENV) has been expanding its range to temperate areas that are not usually affected, where the spread of vectors has been facilitated by global trade and climate change. In Europe, th...
doi.org
December 4, 2024 at 1:45 PM
More on Dengue in Italy:
#genomicsurveillance
#genomicsurveillance
Drawing on lessons from the COVID-19 pandemic, the presentation explored how genomic surveillance is evolving in response to growing concerns around data sovereignty, privacy, and equitable benefit sharing.
#DataSharing #GenomicSurveillance #DataBenefitSharing #GenomicData
#DataSharing #GenomicSurveillance #DataBenefitSharing #GenomicData
June 15, 2026 at 3:40 PM
Drawing on lessons from the COVID-19 pandemic, the presentation explored how genomic surveillance is evolving in response to growing concerns around data sovereignty, privacy, and equitable benefit sharing.
#DataSharing #GenomicSurveillance #DataBenefitSharing #GenomicData
#DataSharing #GenomicSurveillance #DataBenefitSharing #GenomicData
We should care more about emerging infectious diseases, and the tools we need to fight them
#Health #InfectiousDiseases #Pandemic #Influenza #AvianFlu #GenomicSurveillance #PublicHealth #DiseasePrevention #Mpox #GlobalHealth #Epidemiology #COVID19 #STIs
the-14.com/we-should-ca...
#Health #InfectiousDiseases #Pandemic #Influenza #AvianFlu #GenomicSurveillance #PublicHealth #DiseasePrevention #Mpox #GlobalHealth #Epidemiology #COVID19 #STIs
the-14.com/we-should-ca...
the-14.com
February 28, 2025 at 5:06 AM
We should care more about emerging infectious diseases, and the tools we need to fight them
#Health #InfectiousDiseases #Pandemic #Influenza #AvianFlu #GenomicSurveillance #PublicHealth #DiseasePrevention #Mpox #GlobalHealth #Epidemiology #COVID19 #STIs
the-14.com/we-should-ca...
#Health #InfectiousDiseases #Pandemic #Influenza #AvianFlu #GenomicSurveillance #PublicHealth #DiseasePrevention #Mpox #GlobalHealth #Epidemiology #COVID19 #STIs
the-14.com/we-should-ca...
Overall, H5N1 risk lies not only in human-to-human transmission, but in the convergence of high pathogenicity, subtle molecular adaptation, diagnostic gaps, and expanding host range.
#H5N1 #InfluenzaA #OneHealth #GenomicSurveillance #Spillover #Zoonoses #PandemicRisk 12/13
#H5N1 #InfluenzaA #OneHealth #GenomicSurveillance #Spillover #Zoonoses #PandemicRisk 12/13
January 26, 2026 at 1:59 PM
Overall, H5N1 risk lies not only in human-to-human transmission, but in the convergence of high pathogenicity, subtle molecular adaptation, diagnostic gaps, and expanding host range.
#H5N1 #InfluenzaA #OneHealth #GenomicSurveillance #Spillover #Zoonoses #PandemicRisk 12/13
#H5N1 #InfluenzaA #OneHealth #GenomicSurveillance #Spillover #Zoonoses #PandemicRisk 12/13
🚨 New in Nature Communications!
CoVerage (sarscoverage.org) enables early in silico detection of emerging SARS-CoV-2 variants.
Led by Helmholtz Centre for Infection Research, driving innovation in genomic surveillance.
🔗 www.nature.com/articles/s41...
#GenomicSurveillance
CoVerage (sarscoverage.org) enables early in silico detection of emerging SARS-CoV-2 variants.
Led by Helmholtz Centre for Infection Research, driving innovation in genomic surveillance.
🔗 www.nature.com/articles/s41...
#GenomicSurveillance
CoVerage: SARS-CoV-2 lineage, S-protein mutation, antigenic variation dynamics
Impressum (DE) / Imprint (EN) Datenschutz (DE) / Data protection (EN)
sarscoverage.org
July 24, 2025 at 5:21 AM
🚨 New in Nature Communications!
CoVerage (sarscoverage.org) enables early in silico detection of emerging SARS-CoV-2 variants.
Led by Helmholtz Centre for Infection Research, driving innovation in genomic surveillance.
🔗 www.nature.com/articles/s41...
#GenomicSurveillance
CoVerage (sarscoverage.org) enables early in silico detection of emerging SARS-CoV-2 variants.
Led by Helmholtz Centre for Infection Research, driving innovation in genomic surveillance.
🔗 www.nature.com/articles/s41...
#GenomicSurveillance
Full article: www.mdpi.com/1999-4915/17...
#COVID19 #SARSCoV2 #VaccinationImpact #GenomicSurveillance #PublicHealth #Genomics #Brazil
4/4
#COVID19 #SARSCoV2 #VaccinationImpact #GenomicSurveillance #PublicHealth #Genomics #Brazil
4/4
www.mdpi.com
November 20, 2025 at 10:53 AM
New review highlights #SARS-CoV-2 evolution and longstanding #GenomicSurveillance in Germany, emphasising the need for adaptive #PublicHealth strategies for pandemic preparedness.
📄 https://doi.org/10.1038/s43856-025-01093-1
👤 EVBC members: Max von Kleist, Thorsten Wolff
📄 https://doi.org/10.1038/s43856-025-01093-1
👤 EVBC members: Max von Kleist, Thorsten Wolff
A public health perspective of SARS-CoV-2 evolution and surveillance strategies in Germany from 2020 to 2023 - Communications Medicine
Oh, Hölzer et al., discuss the multidisciplinary approach used for monitoring the genomic and virological evolution of SARS-CoV-2 during the COVID-19 pandemic and its implications on public health in Germany. They emphasize the need for continuous surveillance and adaptation of public health strategies to address evolving viral threats.
doi.org
December 29, 2025 at 12:49 PM
New review highlights #SARS-CoV-2 evolution and longstanding #GenomicSurveillance in Germany, emphasising the need for adaptive #PublicHealth strategies for pandemic preparedness.
📄 https://doi.org/10.1038/s43856-025-01093-1
👤 EVBC members: Max von Kleist, Thorsten Wolff
📄 https://doi.org/10.1038/s43856-025-01093-1
👤 EVBC members: Max von Kleist, Thorsten Wolff
Exciting results from my synthetic virology work
open.substack.com/pub/tahirhb/...
#SyntheticVirology #SARSCoV2 #Bioinformatics #GenomicSurveillance #CoVsurver #VariantTracking #VirusEvolution #GVAtlas
open.substack.com/pub/tahirhb/...
#SyntheticVirology #SARSCoV2 #Bioinformatics #GenomicSurveillance #CoVsurver #VariantTracking #VirusEvolution #GVAtlas
July 6, 2025 at 1:26 PM
Exciting results from my synthetic virology work
open.substack.com/pub/tahirhb/...
#SyntheticVirology #SARSCoV2 #Bioinformatics #GenomicSurveillance #CoVsurver #VariantTracking #VirusEvolution #GVAtlas
open.substack.com/pub/tahirhb/...
#SyntheticVirology #SARSCoV2 #Bioinformatics #GenomicSurveillance #CoVsurver #VariantTracking #VirusEvolution #GVAtlas
#GenomicSurveillance of #DengueVirus in Italy reveals local transmission and viral adaptations linked to human and vector interactions.
#Arbovirus #VirusEvolution #ClimateChange
📄 doi.org/10.1080/2222...
EVBC👤: Cesare Gruber
#Arbovirus #VirusEvolution #ClimateChange
📄 doi.org/10.1080/2222...
EVBC👤: Cesare Gruber
Genetic and structural characterization of dengue virus involved in the 2023 autochthonous outbreaks in central Italy
Dengue virus (DENV) has been expanding its range to temperate areas that are not usually affected, where the spread of vectors has been facilitated by global trade and climate change. In Europe, th...
doi.org
December 4, 2024 at 9:07 AM
#GenomicSurveillance of #DengueVirus in Italy reveals local transmission and viral adaptations linked to human and vector interactions.
#Arbovirus #VirusEvolution #ClimateChange
📄 doi.org/10.1080/2222...
EVBC👤: Cesare Gruber
#Arbovirus #VirusEvolution #ClimateChange
📄 doi.org/10.1080/2222...
EVBC👤: Cesare Gruber
🎥New video: Using #GenomicSurveillance to control pathogen infections
Watch @tuliodna.bsky.social and Dr Nália Ismael discuss how the #GenPathAfrica project is enhancing genomic surveillance across Africa to protect public health.
Watch here👉 youtu.be/ok4RgsFIlrE
@globalhealthedctp3.bsky.social
Watch @tuliodna.bsky.social and Dr Nália Ismael discuss how the #GenPathAfrica project is enhancing genomic surveillance across Africa to protect public health.
Watch here👉 youtu.be/ok4RgsFIlrE
@globalhealthedctp3.bsky.social
GenPath Africa | Introducing Work Package 1
YouTube video by LINQ management
youtu.be
November 10, 2025 at 10:17 AM
🎥New video: Using #GenomicSurveillance to control pathogen infections
Watch @tuliodna.bsky.social and Dr Nália Ismael discuss how the #GenPathAfrica project is enhancing genomic surveillance across Africa to protect public health.
Watch here👉 youtu.be/ok4RgsFIlrE
@globalhealthedctp3.bsky.social
Watch @tuliodna.bsky.social and Dr Nália Ismael discuss how the #GenPathAfrica project is enhancing genomic surveillance across Africa to protect public health.
Watch here👉 youtu.be/ok4RgsFIlrE
@globalhealthedctp3.bsky.social
These findings reinforce the need for integrated surveillance and monitoring strategies.
#H5N1 #InfluenzaA #OneHealth #Virology #GenomicSurveillance #Reassortment
Fei et al., 2026. doi.org/10.1016/j.av...
12/13
#H5N1 #InfluenzaA #OneHealth #Virology #GenomicSurveillance #Reassortment
Fei et al., 2026. doi.org/10.1016/j.av...
12/13
Redirecting
doi.org
May 19, 2026 at 12:47 AM
These findings reinforce the need for integrated surveillance and monitoring strategies.
#H5N1 #InfluenzaA #OneHealth #Virology #GenomicSurveillance #Reassortment
Fei et al., 2026. doi.org/10.1016/j.av...
12/13
#H5N1 #InfluenzaA #OneHealth #Virology #GenomicSurveillance #Reassortment
Fei et al., 2026. doi.org/10.1016/j.av...
12/13
🔥 Importance of #GenomicSurveillance
- Continuous genomic surveillance is essential to track the emergence and spread of new variants, understand their impact on vaccine efficacy & inform #publichealth strategies & vaccine development
- Continuous genomic surveillance is essential to track the emergence and spread of new variants, understand their impact on vaccine efficacy & inform #publichealth strategies & vaccine development
January 5, 2026 at 5:22 AM
🔥 Importance of #GenomicSurveillance
- Continuous genomic surveillance is essential to track the emergence and spread of new variants, understand their impact on vaccine efficacy & inform #publichealth strategies & vaccine development
- Continuous genomic surveillance is essential to track the emergence and spread of new variants, understand their impact on vaccine efficacy & inform #publichealth strategies & vaccine development
The future of H5N1 control depends on integrating data science, biotechnology, and environmental surveillance — a true ecosystem of One Health innovation.
#OneHealth #H5N1 #Influenza #AI #GenomicSurveillance #PublicHealth #GlobalHealth
(9/11)
#OneHealth #H5N1 #Influenza #AI #GenomicSurveillance #PublicHealth #GlobalHealth
(9/11)
October 20, 2025 at 4:34 PM
The future of H5N1 control depends on integrating data science, biotechnology, and environmental surveillance — a true ecosystem of One Health innovation.
#OneHealth #H5N1 #Influenza #AI #GenomicSurveillance #PublicHealth #GlobalHealth
(9/11)
#OneHealth #H5N1 #Influenza #AI #GenomicSurveillance #PublicHealth #GlobalHealth
(9/11)