Biomarkerkb.org v1.0.4 is live!
New data from Cancer Genome Interpreter & Metabolomics Workbench, added Cell & Protein Ontology links, plus a cookie fix for smoother UX.
Explore the update and other features: biomarkerkb.org
#knowledgegraph #biomarkerKB #bioinformatics
New data from Cancer Genome Interpreter & Metabolomics Workbench, added Cell & Protein Ontology links, plus a cookie fix for smoother UX.
Explore the update and other features: biomarkerkb.org
#knowledgegraph #biomarkerKB #bioinformatics
BiomarkerKB
BiomarkerKB is a Common Fund Data Ecosystem (CFDE) sponsored project to develop a knowledgebase that will organize and integrate biomarker data from different public sources.
Biomarkerkb.org
October 23, 2025 at 2:37 PM
Biomarkerkb.org v1.0.4 is live!
New data from Cancer Genome Interpreter & Metabolomics Workbench, added Cell & Protein Ontology links, plus a cookie fix for smoother UX.
Explore the update and other features: biomarkerkb.org
#knowledgegraph #biomarkerKB #bioinformatics
New data from Cancer Genome Interpreter & Metabolomics Workbench, added Cell & Protein Ontology links, plus a cookie fix for smoother UX.
Explore the update and other features: biomarkerkb.org
#knowledgegraph #biomarkerKB #bioinformatics
So delighted to congratulate Dr. Masood on the publication of his dissertation research! www.linkedin.com/posts/danial...
BiomarkerKB PhD Thesis and Public Infrastructure | Daniall Masood, Ph.D. posted on the topic | LinkedIn
BiomarkerKB was the core of my PhD. My thesis used the data I curated, with data from our collaborators, in BiomarkerKB and focused on leveraging knowledge graph creation and machine learning to find ...
www.linkedin.com
September 1, 2026 at 2:23 PM
So delighted to congratulate Dr. Masood on the publication of his dissertation research! www.linkedin.com/posts/danial...
Excited to share that GlyGen & BiomarkerKB were featured at #SFG2025 Annual Meeting in San Diego, CA!
Cyrus Chun Hong Au Yeung presented on a Large Language Model (LLM)-based Workflow for mining glycan biomarkers and harmonizing the results into BiomarkerKB & GlyGen.
#glycotime #biomarker
Cyrus Chun Hong Au Yeung presented on a Large Language Model (LLM)-based Workflow for mining glycan biomarkers and harmonizing the results into BiomarkerKB & GlyGen.
#glycotime #biomarker
November 18, 2025 at 7:02 PM
Excited to share that GlyGen & BiomarkerKB were featured at #SFG2025 Annual Meeting in San Diego, CA!
Cyrus Chun Hong Au Yeung presented on a Large Language Model (LLM)-based Workflow for mining glycan biomarkers and harmonizing the results into BiomarkerKB & GlyGen.
#glycotime #biomarker
Cyrus Chun Hong Au Yeung presented on a Large Language Model (LLM)-based Workflow for mining glycan biomarkers and harmonizing the results into BiomarkerKB & GlyGen.
#glycotime #biomarker
We are now officially on Bluesky! 🎉
Follow BiomarkerKB, a knowledgebase in the NIH CFDE that integrates biomarker data with context to provide a systems-level view of health and disease.
Explore now: biomarkerkb.org
#BiomarkerKB #CFDE #DataIntegration #OmicsData #Biomarkers #Bioinformatics
Follow BiomarkerKB, a knowledgebase in the NIH CFDE that integrates biomarker data with context to provide a systems-level view of health and disease.
Explore now: biomarkerkb.org
#BiomarkerKB #CFDE #DataIntegration #OmicsData #Biomarkers #Bioinformatics
October 3, 2025 at 6:30 PM
We are now officially on Bluesky! 🎉
Follow BiomarkerKB, a knowledgebase in the NIH CFDE that integrates biomarker data with context to provide a systems-level view of health and disease.
Explore now: biomarkerkb.org
#BiomarkerKB #CFDE #DataIntegration #OmicsData #Biomarkers #Bioinformatics
Follow BiomarkerKB, a knowledgebase in the NIH CFDE that integrates biomarker data with context to provide a systems-level view of health and disease.
Explore now: biomarkerkb.org
#BiomarkerKB #CFDE #DataIntegration #OmicsData #Biomarkers #Bioinformatics
🔬 Did you know that BiomarkerKB cross-references to 40+ resources, including @glygen.bsky.social, @UniProtKB, ClinVar, ChEBI, PubChem, dbSNP, NCBI Gene & more? Explore BiomarkerKB.org to discover biomarker info and explore addition info through the cross-references! 🧬 #Biomarkers #Bioinformatics
April 29, 2026 at 2:38 AM
🔬 Did you know that BiomarkerKB cross-references to 40+ resources, including @glygen.bsky.social, @UniProtKB, ClinVar, ChEBI, PubChem, dbSNP, NCBI Gene & more? Explore BiomarkerKB.org to discover biomarker info and explore addition info through the cross-references! 🧬 #Biomarkers #Bioinformatics
@rmazumde.bsky.social presenting BiomarkerKB at #BioCuration2025 — a scalable, ontology-driven hub for clinically relevant biomarkers. Built for easy integration into resources like GlyGen using standard formats & open licenses. Missing your favorite biomarker? Tell us!
#biomarkers #dataintegration
#biomarkers #dataintegration
April 22, 2025 at 10:50 PM
@rmazumde.bsky.social presenting BiomarkerKB at #BioCuration2025 — a scalable, ontology-driven hub for clinically relevant biomarkers. Built for easy integration into resources like GlyGen using standard formats & open licenses. Missing your favorite biomarker? Tell us!
#biomarkers #dataintegration
#biomarkers #dataintegration
Online Now: BiomarkerKB: An integrated knowledgebase supporting biomarker-centric exploration of biomedical data #datascience
BiomarkerKB: An integrated knowledgebase supporting biomarker-centric exploration of biomedical data
BiomarkerKB addresses the fragmentation of biomarker information by integrating diverse biomarker resources into a standardized, computable knowledgebase. The resource combines over 200,000 biomarker-disease associations with rich contextual metadata and a knowledge graph accessible through a public web portal. BiomarkerKB supports data reuse, knowledge discovery, and the development of biomarker-driven research.
dlvr.it
August 17, 2026 at 3:35 PM
Online Now: BiomarkerKB: An integrated knowledgebase supporting biomarker-centric exploration of biomedical data #datascience
Maria and Urnisha presenting the BiomarkerKB and GlyGen poster 3386 at #ISMB2026. Stop by to learn how GlyGen resources support glycoscience data integration, biomarker research, and discovery. #glycoscience #bioinformatics
July 13, 2026 at 8:05 PM
Maria and Urnisha presenting the BiomarkerKB and GlyGen poster 3386 at #ISMB2026. Stop by to learn how GlyGen resources support glycoscience data integration, biomarker research, and discovery. #glycoscience #bioinformatics
We’re excited to share that BiomarkerKB will be at ISMB 2026 in Washington, DC! Join us for 2 talks and 2 poster presentations highlighting advances in standardized biomarker representation, knowledge graphs, FAIR data integration, and LLM-based biomedical literature curation. #ISMB2026 #BiomarkerKB
July 13, 2026 at 1:27 PM
We’re excited to share that BiomarkerKB will be at ISMB 2026 in Washington, DC! Join us for 2 talks and 2 poster presentations highlighting advances in standardized biomarker representation, knowledge graphs, FAIR data integration, and LLM-based biomedical literature curation. #ISMB2026 #BiomarkerKB
Unable to join today's #CommonFundDataEcosystem #PublicWebinarSeries featuring @biomarkerkb.bsky.social?
💻 The webinar recording is LIVE: youtu.be/lcee85K-yPY
🎙️ Raja Mazumder and Jeet Vora showcase how this knowledgebase enables deeper exploration for researchers and data scientists.
💻 The webinar recording is LIVE: youtu.be/lcee85K-yPY
🎙️ Raja Mazumder and Jeet Vora showcase how this knowledgebase enables deeper exploration for researchers and data scientists.
CFDE Public Webinar Series - January 30, 2026 - BiomarkerKB
YouTube video by HuGeAMP Knowledge Portals
youtu.be
January 30, 2026 at 7:32 PM
Unable to join today's #CommonFundDataEcosystem #PublicWebinarSeries featuring @biomarkerkb.bsky.social?
💻 The webinar recording is LIVE: youtu.be/lcee85K-yPY
🎙️ Raja Mazumder and Jeet Vora showcase how this knowledgebase enables deeper exploration for researchers and data scientists.
💻 The webinar recording is LIVE: youtu.be/lcee85K-yPY
🎙️ Raja Mazumder and Jeet Vora showcase how this knowledgebase enables deeper exploration for researchers and data scientists.
BiomarkerKB: FAIR and Integrated Biomarker Knowledge Connecting Biomolecular and Clinical Data Types https://www.biorxiv.org/content/10.64898/2026.01.26.701395v1
January 27, 2026 at 7:47 PM
BiomarkerKB: FAIR and Integrated Biomarker Knowledge Connecting Biomolecular and Clinical Data Types https://www.biorxiv.org/content/10.64898/2026.01.26.701395v1
Excited to welcome our selected volunteers to the BiomarkerKB Summer Volunteer Program! From June 1–July 31, they will support biomarker validation, literature curation, EHR entity integration, and front-end testing to strengthen structured, reusable biomedical knowledge. #BiomarkerKB #DataCuration
June 23, 2026 at 4:15 PM
Excited to welcome our selected volunteers to the BiomarkerKB Summer Volunteer Program! From June 1–July 31, they will support biomarker validation, literature curation, EHR entity integration, and front-end testing to strengthen structured, reusable biomedical knowledge. #BiomarkerKB #DataCuration
Fall 2025 HIVE Lab Volunteership Symposium was a success!
Over 13 weeks, 10 volunteers worked on BiomarkerKB, GlyGen, ArgosDB & PredictMod, presenting projects on LLM curation, metadata cleanup, pathogen QC & publication mining.
Congrats to the Fall volunteer cohort!
#Glycotime #Volunteership
Over 13 weeks, 10 volunteers worked on BiomarkerKB, GlyGen, ArgosDB & PredictMod, presenting projects on LLM curation, metadata cleanup, pathogen QC & publication mining.
Congrats to the Fall volunteer cohort!
#Glycotime #Volunteership
December 8, 2025 at 5:29 PM
Fall 2025 HIVE Lab Volunteership Symposium was a success!
Over 13 weeks, 10 volunteers worked on BiomarkerKB, GlyGen, ArgosDB & PredictMod, presenting projects on LLM curation, metadata cleanup, pathogen QC & publication mining.
Congrats to the Fall volunteer cohort!
#Glycotime #Volunteership
Over 13 weeks, 10 volunteers worked on BiomarkerKB, GlyGen, ArgosDB & PredictMod, presenting projects on LLM curation, metadata cleanup, pathogen QC & publication mining.
Congrats to the Fall volunteer cohort!
#Glycotime #Volunteership
The BiomarkerKB team attended the CFDE 2025 Fall Meeting (Oct 27–28) in Bethesda, MD.
The team joined discussions on shared data infrastructure, interoperability, and biomarker partnerships, contributing to collaborative efforts driving biomedical discovery.
#CFDE #BiomarkerKB #KnowledgeGraph
The team joined discussions on shared data infrastructure, interoperability, and biomarker partnerships, contributing to collaborative efforts driving biomedical discovery.
#CFDE #BiomarkerKB #KnowledgeGraph
November 5, 2025 at 6:12 PM
The BiomarkerKB team attended the CFDE 2025 Fall Meeting (Oct 27–28) in Bethesda, MD.
The team joined discussions on shared data infrastructure, interoperability, and biomarker partnerships, contributing to collaborative efforts driving biomedical discovery.
#CFDE #BiomarkerKB #KnowledgeGraph
The team joined discussions on shared data infrastructure, interoperability, and biomarker partnerships, contributing to collaborative efforts driving biomedical discovery.
#CFDE #BiomarkerKB #KnowledgeGraph
BiomarkerKB v1.0.3 is live!
NCBI + ChEBI cross-refs now integrated. Backend upgraded to REST API for improved stability and compatibility.
Explore the update and other features: biomarkerkb.org
#knowledgegraph #biomarkerKB #bioinformatics
NCBI + ChEBI cross-refs now integrated. Backend upgraded to REST API for improved stability and compatibility.
Explore the update and other features: biomarkerkb.org
#knowledgegraph #biomarkerKB #bioinformatics
October 10, 2025 at 3:39 PM
BiomarkerKB v1.0.3 is live!
NCBI + ChEBI cross-refs now integrated. Backend upgraded to REST API for improved stability and compatibility.
Explore the update and other features: biomarkerkb.org
#knowledgegraph #biomarkerKB #bioinformatics
NCBI + ChEBI cross-refs now integrated. Backend upgraded to REST API for improved stability and compatibility.
Explore the update and other features: biomarkerkb.org
#knowledgegraph #biomarkerKB #bioinformatics
Excited to share that BiomarkerKB was featured at the #AWS Open Data Life Sciences Hackathon!
Daniall Masood and Maria Kim helped build a pipeline linking primary datasets to knowledge graphs using Biolink, enabling LLM-powered querying and broader data connectivity.
#biomarkerkb #knowledgegraph
Daniall Masood and Maria Kim helped build a pipeline linking primary datasets to knowledge graphs using Biolink, enabling LLM-powered querying and broader data connectivity.
#biomarkerkb #knowledgegraph
October 8, 2025 at 4:16 PM
Excited to share that BiomarkerKB was featured at the #AWS Open Data Life Sciences Hackathon!
Daniall Masood and Maria Kim helped build a pipeline linking primary datasets to knowledge graphs using Biolink, enabling LLM-powered querying and broader data connectivity.
#biomarkerkb #knowledgegraph
Daniall Masood and Maria Kim helped build a pipeline linking primary datasets to knowledge graphs using Biolink, enabling LLM-powered querying and broader data connectivity.
#biomarkerkb #knowledgegraph
Exciting news from the CFDE Spring Meeting in Bethesda! The GlyGen and the BiomarkerKB teams showcased their work at the poster session on March 24-25. Jeet Vora presented on the GlyGen-CFDE internship and Daniall Masood presented the BiomarkerKB portal, which received an award!
#glycotime #CFDE
#glycotime #CFDE
April 4, 2025 at 8:14 PM
Exciting news from the CFDE Spring Meeting in Bethesda! The GlyGen and the BiomarkerKB teams showcased their work at the poster session on March 24-25. Jeet Vora presented on the GlyGen-CFDE internship and Daniall Masood presented the BiomarkerKB portal, which received an award!
#glycotime #CFDE
#glycotime #CFDE
GlyGen & BiomarkerKB teams participated in the CFDE Spring Meeting in Bethesda on March 24-25. BiomarkerKB hosted a breakout session focused on interactive discussions & upcoming plans. Both teams presented posters and engaged with other CFDE members. #glycotime #cfde #spring2025
April 4, 2025 at 4:23 PM
GlyGen & BiomarkerKB teams participated in the CFDE Spring Meeting in Bethesda on March 24-25. BiomarkerKB hosted a breakout session focused on interactive discussions & upcoming plans. Both teams presented posters and engaged with other CFDE members. #glycotime #cfde #spring2025
Excited to present BiomarkerKB at the CFDE Spring Meeting tomorrow in Bethesda! Looking forward to connecting with fellow researchers and exploring innovative tools for biomedical data analysis. Join us March 25-26 for posters, demos, and collaborative discussions!
🔗 cfdeconnect.org/spring25/
#CFDE
🔗 cfdeconnect.org/spring25/
#CFDE
CFDE Spring 2025 Meeting - CONNECT ICC
Common Fund Data Ecosystem (CFDE) will host a two-day, in-person program meeting in Bethesda, MD on March 25th and 26th. This will be an opportunity for CFDE members to come ... Read more
cfdeconnect.org
March 24, 2025 at 4:51 PM
Excited to present BiomarkerKB at the CFDE Spring Meeting tomorrow in Bethesda! Looking forward to connecting with fellow researchers and exploring innovative tools for biomedical data analysis. Join us March 25-26 for posters, demos, and collaborative discussions!
🔗 cfdeconnect.org/spring25/
#CFDE
🔗 cfdeconnect.org/spring25/
#CFDE
BiomarkerKB: FAIR and Integrated Biomarker Knowledge Connecting Biomolecular and Clinical Data Types https://www.biorxiv.org/content/10.64898/2026.01.26.701395v1
January 27, 2026 at 7:47 PM
BiomarkerKB: FAIR and Integrated Biomarker Knowledge Connecting Biomolecular and Clinical Data Types https://www.biorxiv.org/content/10.64898/2026.01.26.701395v1
RM: Further complicated by comorbidities that shift expression of biomarkers #Biocuration2025
biomarkerkb.org
biomarkerkb.org
BiomarkerKB
BiomarkerKB is a Common Fund Data Ecosystem (CFDE) sponsored project to develop a knowledgebase that will organize and integrate biomarker data from different public sources.
biomarkerkb.org
April 8, 2025 at 9:06 PM
RM: Further complicated by comorbidities that shift expression of biomarkers #Biocuration2025
biomarkerkb.org
biomarkerkb.org
Next, Raja Mazumder, BiomarkerKB #Biocuration2025
April 8, 2025 at 9:01 PM
Next, Raja Mazumder, BiomarkerKB #Biocuration2025