#Bionformatics
HMMER has been the single software I have constantly used without interruption since my undergrad times.

This is terrible news for genomics and bionformatics EVERYWHERE
May 28, 2025 at 6:41 PM
Our #bionformatics #dataviz #Rstats package scatterbar for visualizing cell-type proportions in spot-resolution #spatialtranscriptomics data is now published! Try it out!

Paper: academic.oup.com/bioinformati...
Code: cran.r-project.org/web/packages...
Tutorials: jef.works/scatterbar/

#AcademicSky
February 25, 2025 at 5:59 PM
Back in Hinxton for our annual @training.ebi.embl.org genome bionformatics course, loving the campus on this sunny morning 😍
November 17, 2025 at 9:12 AM
Our #bionformatics #Rstats method CRAWDAD for quantifying cell-type spatial relationships across length scales in #singlecell #spatialomics data is now published!

Paper: www.nature.com/articles/s41...
Code: github.com/JEFworks-Lab...

🥳🥂 #AcademicSky

Previous 🧵 summary: bsky.app/profile/jef....
January 6, 2025 at 4:22 PM
Come work with us! We are looking for an IT professional to join our bionformatics core facility team 💻✨

Read full description and apply by Aug 28
👉 bit.ly/4lsGGsZ

@turkubioscience.bsky.social @inflames-flagship.bsky.social @utu.fi
July 2, 2025 at 11:04 AM
🚀 Macromolecule structures have been front & center at #ISMBECCB2025 in Liverpool -- the world’s largest #bioinformatics meeting!

🗝️ Keynotes:
www.iscb.org/ismbeccb2025...

🧬More strucurtal bionformatics / computational biology talks, #3DSIG stream:
www.iscb.org/ismbeccb2025...

@3dsig.bsky.social
July 24, 2025 at 11:34 AM
Why and how to set up a Bioinformatics Learning Lab (BILL). #Bionformatics #BioinformaticsTraining #Genomics #PLOScomputationalBiology 🧬 🖥️
journals.plos.org/ploscompbiol...
September 10, 2025 at 5:07 PM
We're alive !
Migale is a core bionformatics facility from @inrae-france.bsky.social , part of @ifb-elixir-fr.bsky.social

Follow us for information on microbial bioinformatics, computing infrastructure, bioinformatics tutorials, details of our training courses and much more.
February 13, 2025 at 4:34 PM
❗Still one week to apply for our postdoc position in bionformatics & biostatistics @ Eurac Biomedicine in the beautiful Dolomites - hurry up!
#stats 👇
📢We have a new Post-doc position in #bioinformatics & #biostats
• Link: eurac.onboard.org/jobs/RGbRKOG2
• Deadline: 15.12.2024
The fellow will work on bioinformatic methods for cancer & other complex traits. Looking for experts on RNA-seq, ChIP-seq, ATAC-seq and WES analyses
Post-doc position in bioinformatics and biostatistics
Eurac Research · Bozen/Bolzano
eurac.onboard.org
December 6, 2024 at 7:51 PM
My team has roles available for scientific developers either as Technical Lead (more senior) or as part of the development of a Side Effect Resource.

baoilleach.blogspot.com/2025/12/open...

#chemsky #chemjobs #bionformatics #cheminformatics #datascience #techlead
Openings for Scientific Developers in the Chemical Biology Services team
As part of a collaboration with Open Targets on the development of a Side Effect Resource to guide target selection, we have two positions a...
baoilleach.blogspot.com
December 15, 2025 at 12:39 PM
ChEMBL is a database of bioactivity for drugs and drug-like compounds at @ebi.embl.org.

Get to know the database and how to use it with our free webinar recording: www.ebi.ac.uk/training/eve...

#drugdesign #drugdevelopment #openscience #chemicalbiology #bionformatics

🖥️🧪
September 9, 2025 at 11:43 AM
Aliro: an automated machine learning tool leveraging large language models academic.oup.com/bioinformati... #automl #llms #aliro #bionformatics
March 6, 2024 at 2:19 PM
Welcome Vladimir to the community search engine.

We now have Belgrade and bionformatics in the index search.dwebvancouver...

Add your personal site, a project, or community you’re part of
LOCALHOST DWeb Vancouver Community Search Engine
LOCALHOST is a Vancouver community search engine
search.dwebvancouver.org
August 3, 2024 at 9:36 PM
NEW PAPER (metascience/statistics/bionformatics): When referring to "methods", we often sweep "dirty" details regarding preprocessing, parameters, implementation, etc. under the carpet… But uncertainty is huge and often has a huge impact on results:
wires.onlinelibrary.wiley.com/doi/10.1002/...
1/5
From RNA sequencing measurements to the final results: A practical guide to navigating the choices and uncertainties of gene set analysis
In gene set analysis, a researcher is typically confronted with many uncertainties in choosing the “right” method, corresponding parameter setting, and data preprocessing approach. We aim to offer gu....
wires.onlinelibrary.wiley.com
February 15, 2024 at 10:38 AM
T2T-CHM13 versus hg38: accurate identification of immunoglobulin isotypes from scRNA-seq requires a genome reference matched for ancestry. #ReferenceGenomes #ImmunoglobulinIsotypes #scRNAseq #NARgenomicsANDBioinformatics #Bionformatics #Genomics 🧬 🖥️
academic.oup.com/nargab/artic...
June 18, 2025 at 5:05 PM
3/n
w me: #GeneticEpi #StatGen #Bionformatics
Interests: stats&comput methods 4 genetic epi. Fields: kidney function, cardiovascular health, immune system. Methods for: large-scale, multiancestry, GWAS meta-analyses; WES/WGS; multiomics data integration; nonconventional phenotypes; causal inference
February 28, 2025 at 1:59 PM
Welcome Vladimir to the community search engine.

We now have Belgrade and bionformatics in the index https://search.dwebvancouver.org/?q=belgrade

Add your personal site, a project, or community you’re part of
August 3, 2024 at 9:36 PM
The Visual Cortex Algorithm: What Coding Can Learn from the Brain’s Vision Engine
By: Alireza Minagar, MD, MBA, MS (Bionformatics) Software Engineer **👁️ A Developer’s Look Into the Most Advanced Visual System We Know: The Human Brain** When we build computer vision systems, we start with what we know — layers, convolution, pooling, attention. But long before we had GPUs and PyTorch, evolution had already coded the ultimate visual model: the human visual cortex. This article unpacks what developers, AI engineers, and machine learning enthusiasts can actually learn from the visual brain — not as metaphor, but as software architecture. 🔬** Neuroscience as Architecture: Lessons from Nature** 1. Retina = Real-Time Signal Preprocessing Before data ever reaches the brain, your retina compresses, enhances contrast, and selectively transmits. Like a CNN's early layers, it removes noise and boosts signal. 2. V1 Cortex = Orientation Filters Visual cortex area V1 is a matrix of filters — each neuron tuned to detect a specific angle or motion. It’s sparse coding at the hardware level. Sound familiar? 3. Feedback Loops = Adaptive Context Human perception is bidirectional: higher cognitive areas send predictions back to early visual zones. Modern transformers use similar contextual encoding. The brain did it naturally. 4. Saccades = Intelligent Sampling We don’t scan every pixel. Our eyes jump (saccades) based on salience and interest — biologically optimized attention. Great UX. Better compute economy. 5. Plasticity = Lifelong Learning Unlike static models, the brain rewires — without catastrophic forgetting. Future AI must embrace online learning and dynamic architectures to keep pace. 💡** So, What Can Coders Learn?** We’re not just chasing performance benchmarks — we’re imitating intelligence itself. And the brain, especially its visual engine, is proof that elegance and efficiency can coexist. Let’s build models that are adaptive, context-aware, and designed for lifelong learning — just like the brain. 📖 **Want the Deep Dive?** 🔗 Full Medium Article https://medium.com/@aminagar_38889/the-visual-cortex-algorithm-what-coding-can-learn-from-the-brains-vision-engine-ddd6fdbbdc69
forem.com
May 28, 2025 at 8:19 PM
Welcome Vlad @ersteregen to the community search engine.

We now have Belgrade and bionformatics in the index.
March 7, 2025 at 12:40 AM
A collaborator forwarded me a plasmid in .dna file format. I downloaded a sequence viewer (good old ApE). Suddenly a ton of memories reemerged: the days spent on testing GUI for sequence analysis, the guys trying to sell us CLC or Partek… is anybody using those today? #bionformatics
January 14, 2025 at 4:25 PM
PhD Student in Virology/Bionformatics #ScienceJobs #AcademicSky jobrxiv.org/job/otto...
PhD Student in Virology/Bionformatics
Post a job in 3min, or find thousands of job offers like this one at jobRxiv!
jobrxiv.org
August 7, 2024 at 2:30 PM
Join #dkNET Webinar this Friday to learn how exFINDER reveals external signals influencing cells in single-cell #transcriptomics! 🧬
📅 Dec 6, 2024 | 11 AM PT
👨‍🏫 Changhan He, PhD, UC Irvine
🔗 More information: https://buff.ly/4g3JrxC
#bionformatics #scSeq
December 4, 2024 at 5:15 PM
Don't forget to register for the 2016 Networks and Pathways course… Registration closes 4th March

ebi.ac.uk/training/event…
EMBL’s European Bionformatics Institute
EMBL-EBI
www.ebi.ac.uk
December 9, 2024 at 11:47 AM