Carbon-A from Hugging Face (Oct 8): a 1.2B-parameter DNA model that annotates protein-coding genes across eukaryotes. It reads 98,304 bp at nucleotide resolution on both strands and ships a 48K-assembly annotation database. No signup: toolome.bio/tools/carbon-a/ #Genomics #GenomeAnnotation
Carbon-A: license, commercial use, paper — Genomics & DNA models | Toolome
Carbon-A: 1.2B DNA model that annotates protein-coding genes across eukaryotes; ships a 48K-assembly annotation database. Commercial use: Unknown.
toolome.bio
November 2, 2026 at 4:21 AM
Carbon-A from Hugging Face (Oct 8): a 1.2B-parameter DNA model that annotates protein-coding genes across eukaryotes. It reads 98,304 bp at nucleotide resolution on both strands and ships a 48K-assembly annotation database. No signup: toolome.bio/tools/carbon-a/ #Genomics #GenomeAnnotation
Which annotation pipelines suit Australian reference genomes?
Explore benchmarking findings with Jane Tung and Thomas Harrop.
4 November, 1 - 2 pm AEDT
Register: www.biocommons.org.au/events/bench....
#GenomeAnnotation #Bioinformatic
Explore benchmarking findings with Jane Tung and Thomas Harrop.
4 November, 1 - 2 pm AEDT
Register: www.biocommons.org.au/events/bench....
#GenomeAnnotation #Bioinformatic
WEBINAR: Benchmarking the latest annotation pipelines on Australian reference genomes — Australian BioCommons
Join us to explore our benchmarking findings and learn how these insights can streamline your own genome assembly and annotation workflows. More information Register
www.biocommons.org.au
October 28, 2026 at 3:22 AM
Which annotation pipelines suit Australian reference genomes?
Explore benchmarking findings with Jane Tung and Thomas Harrop.
4 November, 1 - 2 pm AEDT
Register: www.biocommons.org.au/events/bench....
#GenomeAnnotation #Bioinformatic
Explore benchmarking findings with Jane Tung and Thomas Harrop.
4 November, 1 - 2 pm AEDT
Register: www.biocommons.org.au/events/bench....
#GenomeAnnotation #Bioinformatic
#ERGAReads | Annotation of 200 Insect Genomes with #BRAKER for Consistent Comparisons across Species 🦋 🐛 🐜 🐝 🪲 🐞 🦗 🦟
rdcu.be/e4Sub
@katharinahoff.bsky.social @gevol.bsky.social @unigreifswald.bsky.social
#genomes #insects #annotation #genomeannotation
rdcu.be/e4Sub
@katharinahoff.bsky.social @gevol.bsky.social @unigreifswald.bsky.social
#genomes #insects #annotation #genomeannotation
Annotation of 200 Insect Genomes with BRAKER for Consistent Comparisons across Species
The annotation of genomes progresses slower than their sequencing and assembly. Also, species that were previously annotated can benefit from reannotation using more recent RNA-Seq and protein data, as...
rdcu.be
June 3, 2026 at 7:30 AM
#ERGAReads | Annotation of 200 Insect Genomes with #BRAKER for Consistent Comparisons across Species 🦋 🐛 🐜 🐝 🪲 🐞 🦗 🦟
rdcu.be/e4Sub
@katharinahoff.bsky.social @gevol.bsky.social @unigreifswald.bsky.social
#genomes #insects #annotation #genomeannotation
rdcu.be/e4Sub
@katharinahoff.bsky.social @gevol.bsky.social @unigreifswald.bsky.social
#genomes #insects #annotation #genomeannotation
#ERGAReads | Helixer: ab initio prediction of primary eukaryotic gene models combining deep learning and a hidden Markov model 🧬
www.nature.com/articles/s41...
#GenomeAnnotation #Helixer @natmethods.nature.com
www.nature.com/articles/s41...
#GenomeAnnotation #Helixer @natmethods.nature.com
Helixer: ab initio prediction of primary eukaryotic gene models combining deep learning and a hidden Markov model - Nature Methods
By leveraging both deep learning and hidden Markov models, Helixer achieves broad taxonomic coverage for ab initio gene annotation of eukaryotic genomes from fungi, plants, vertebrates and…
www.nature.com
March 4, 2026 at 8:30 AM
#ERGAReads | Helixer: ab initio prediction of primary eukaryotic gene models combining deep learning and a hidden Markov model 🧬
www.nature.com/articles/s41...
#GenomeAnnotation #Helixer @natmethods.nature.com
www.nature.com/articles/s41...
#GenomeAnnotation #Helixer @natmethods.nature.com
🔹 FAIR metadata for genome annotations: At #BioHackEU25, our #Annotation Committee teams up with the @researchdataall.bsky.social to build a unified framework for collecting, validating & harmonising FAIR metadata.
👉 www.erga-biodiversity.eu/post/erga-at... #genomeannotation #FAIRdata
👉 www.erga-biodiversity.eu/post/erga-at... #genomeannotation #FAIRdata
ERGA at the BioHackathon Europe 2025
Are you interested in bioinformatics and eager to connect with peers worldwide while working on projects with direct applications for the life sciences? Join this year’s BioHackathon Europe between 3–...
www.erga-biodiversity.eu
September 26, 2025 at 8:29 AM
🔹 FAIR metadata for genome annotations: At #BioHackEU25, our #Annotation Committee teams up with the @researchdataall.bsky.social to build a unified framework for collecting, validating & harmonising FAIR metadata.
👉 www.erga-biodiversity.eu/post/erga-at... #genomeannotation #FAIRdata
👉 www.erga-biodiversity.eu/post/erga-at... #genomeannotation #FAIRdata
Later TODAY at 15:00 CEST! Efficient evidence-based genome annotation with EviAnn 🧬
👉 www.erga-biodiversity.eu/post/efficie... #genomeannotation #genomes #seminar #research #EviAnn @ebpgenome.bsky.social
👉 www.erga-biodiversity.eu/post/efficie... #genomeannotation #genomes #seminar #research #EviAnn @ebpgenome.bsky.social
September 23, 2025 at 7:17 AM
Later TODAY at 15:00 CEST! Efficient evidence-based genome annotation with EviAnn 🧬
👉 www.erga-biodiversity.eu/post/efficie... #genomeannotation #genomes #seminar #research #EviAnn @ebpgenome.bsky.social
👉 www.erga-biodiversity.eu/post/efficie... #genomeannotation #genomes #seminar #research #EviAnn @ebpgenome.bsky.social
If you predict or annotate genes from whole genomes, what would you like current software to do better?
What's still missing, unnecessarily difficult, or hard to trust? I'm interested in problems that matter in real projects, including the unglamorous ones.
#Bioinformatics #GenomeAnnotation
What's still missing, unnecessarily difficult, or hard to trust? I'm interested in problems that matter in real projects, including the unglamorous ones.
#Bioinformatics #GenomeAnnotation
July 29, 2026 at 3:07 PM
If you predict or annotate genes from whole genomes, what would you like current software to do better?
What's still missing, unnecessarily difficult, or hard to trust? I'm interested in problems that matter in real projects, including the unglamorous ones.
#Bioinformatics #GenomeAnnotation
What's still missing, unnecessarily difficult, or hard to trust? I'm interested in problems that matter in real projects, including the unglamorous ones.
#Bioinformatics #GenomeAnnotation
Seems like it's time for a new #introduction! I've just started a postdoc with Colin Olito and Bengt Hansson at #LundUniversity. I'll be working with #sexchromosome #evolution in Wikstroemia, doing #genomics, #genomeannotation, and other #bioinformatics things related to that. I'm an avid […]
Original post on scholar.social
scholar.social
August 20, 2025 at 9:46 PM
Seems like it's time for a new #introduction! I've just started a postdoc with Colin Olito and Bengt Hansson at #LundUniversity. I'll be working with #sexchromosome #evolution in Wikstroemia, doing #genomics, #genomeannotation, and other #bioinformatics things related to that. I'm an avid […]
💻🧬 Keen to learn about eukaryotic genome annotation?
Registration is now open for our 2026 online #genomeannotation course, led by our core #bioinformatics team.
Registration is now open for our 2026 online #genomeannotation course, led by our core #bioinformatics team.
Genome Annotation Workshop 2026
The Genome Annotation Workshop is designed to provide scientists with a comprehensive overview of eukaryotic genome annotation approaches.
buff.ly
January 2, 2026 at 11:00 AM
💻🧬 Keen to learn about eukaryotic genome annotation?
Registration is now open for our 2026 online #genomeannotation course, led by our core #bioinformatics team.
Registration is now open for our 2026 online #genomeannotation course, led by our core #bioinformatics team.
💻🧬 Keen to learn about eukaryotic genome annotation?
Registration is now open for our 2026 online #genomeannotation course, led by our core #bioinformatics team.
➡️ buff.ly/sonWCgT
Registration is now open for our 2026 online #genomeannotation course, led by our core #bioinformatics team.
➡️ buff.ly/sonWCgT
Genome Annotation Workshop 2026
Providing scientists with a comprehensive overview of eukaryotic genome annotation approaches.
buff.ly
October 22, 2025 at 10:01 AM
💻🧬 Keen to learn about eukaryotic genome annotation?
Registration is now open for our 2026 online #genomeannotation course, led by our core #bioinformatics team.
➡️ buff.ly/sonWCgT
Registration is now open for our 2026 online #genomeannotation course, led by our core #bioinformatics team.
➡️ buff.ly/sonWCgT
The team used the REAT and Minos pipelines developed at the Earlham Institute. This approach has also been applied to annotate additional wheat wild relatives and as part of the @wheatinitiative.bsky.social. #GenomeAnnotation
@gemygk.bsky.social @swarbre.bsky.social
@gemygk.bsky.social @swarbre.bsky.social
March 21, 2025 at 10:21 AM
The team used the REAT and Minos pipelines developed at the Earlham Institute. This approach has also been applied to annotate additional wheat wild relatives and as part of the @wheatinitiative.bsky.social. #GenomeAnnotation
@gemygk.bsky.social @swarbre.bsky.social
@gemygk.bsky.social @swarbre.bsky.social
My internship experience with assembling genomes and annotating them during a 6 week internship at Freiburg Galaxy.
https://galaxyproject.org/news/2025-07-22-ming-li-internship/
##UseGalaxy ##GalaxyProject ##EOSC ##Bioinformatics ##Genomics ##GenomeAssembly ##GenomeAnnotation ##TrainingProgram (1/2)
https://galaxyproject.org/news/2025-07-22-ming-li-internship/
##UseGalaxy ##GalaxyProject ##EOSC ##Bioinformatics ##Genomics ##GenomeAssembly ##GenomeAnnotation ##TrainingProgram (1/2)
Exploring Genomics with Galaxy: A Six-Week Internship Journey
My internship experience with assembling genomes and annotating them during a 6 week internship
galaxyproject.org
October 21, 2025 at 7:57 AM
My internship experience with assembling genomes and annotating them during a 6 week internship at Freiburg Galaxy.
https://galaxyproject.org/news/2025-07-22-ming-li-internship/
##UseGalaxy ##GalaxyProject ##EOSC ##Bioinformatics ##Genomics ##GenomeAssembly ##GenomeAnnotation ##TrainingProgram (1/2)
https://galaxyproject.org/news/2025-07-22-ming-li-internship/
##UseGalaxy ##GalaxyProject ##EOSC ##Bioinformatics ##Genomics ##GenomeAssembly ##GenomeAnnotation ##TrainingProgram (1/2)
#TropicalPlants
Sweetpotatoon genome v1.0.a2 reannotated using long/short reads; 97.4% BUSCO, 8K+ AS events.
Details: https://maxapress.com/article/doi/10.48130/tp-0024-0009
#Sweetpotato #GenomeAnnotation
Sweetpotatoon genome v1.0.a2 reannotated using long/short reads; 97.4% BUSCO, 8K+ AS events.
Details: https://maxapress.com/article/doi/10.48130/tp-0024-0009
#Sweetpotato #GenomeAnnotation
April 12, 2026 at 4:21 AM
#TropicalPlants
Sweetpotatoon genome v1.0.a2 reannotated using long/short reads; 97.4% BUSCO, 8K+ AS events.
Details: https://maxapress.com/article/doi/10.48130/tp-0024-0009
#Sweetpotato #GenomeAnnotation
Sweetpotatoon genome v1.0.a2 reannotated using long/short reads; 97.4% BUSCO, 8K+ AS events.
Details: https://maxapress.com/article/doi/10.48130/tp-0024-0009
#Sweetpotato #GenomeAnnotation
Genome annotations matter: characterizing Ensembl hg38 annotations from 2014 to 2023. #mRNA #GenomeAnnotation #EnsemblGenes #Isoforms #BMCgenomics
link.springer.com/article/10.1...
link.springer.com/article/10.1...
December 9, 2025 at 11:30 AM
Genome annotations matter: characterizing Ensembl hg38 annotations from 2014 to 2023. #mRNA #GenomeAnnotation #EnsemblGenes #Isoforms #BMCgenomics
link.springer.com/article/10.1...
link.springer.com/article/10.1...
De novo annotation reveals transcriptomic complexity across the hexaploid wheat pan-genome. #WheatGenome #Hexaploid #GenomeAnnotation #Transcriptomics #PanGenome @natcomms.nature.com 🧬 🖥️
www.nature.com/articles/s41...
www.nature.com/articles/s41...
October 18, 2025 at 5:05 PM
De novo annotation reveals transcriptomic complexity across the hexaploid wheat pan-genome. #WheatGenome #Hexaploid #GenomeAnnotation #Transcriptomics #PanGenome @natcomms.nature.com 🧬 🖥️
www.nature.com/articles/s41...
www.nature.com/articles/s41...
MoGAAAP: A modular Snakemake workflow for automated genome assembly and annotation with quality assessment. #GenomeAssembly #GenomeAnnotation #GenomeQuality #Genomics #Bioinformatics @biorxiv-bioinfo.bsky.social 🧬 🖥️
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
September 8, 2025 at 5:05 PM
MoGAAAP: A modular Snakemake workflow for automated genome assembly and annotation with quality assessment. #GenomeAssembly #GenomeAnnotation #GenomeQuality #Genomics #Bioinformatics @biorxiv-bioinfo.bsky.social 🧬 🖥️
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
GFFx: A Rust-based suite of utilities for ultra-fast genomic feature extraction. #Genomics #Rust #GenomeAnnotation #GFF #GenomicFeatures @biorxiv-bioinfo.bsky.social 🧬 🖥️
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
August 16, 2025 at 5:07 PM
GFFx: A Rust-based suite of utilities for ultra-fast genomic feature extraction. #Genomics #Rust #GenomeAnnotation #GFF #GenomicFeatures @biorxiv-bioinfo.bsky.social 🧬 🖥️
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
OMAnnotator: a novel approach to building an annotated consensus genome sequence. #GenomeAnnotation #Genomics #Bioinformatics 🧬 🖥️ @biorxivpreprint.bsky.social
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
December 11, 2024 at 8:16 PM
OMAnnotator: a novel approach to building an annotated consensus genome sequence. #GenomeAnnotation #Genomics #Bioinformatics 🧬 🖥️ @biorxivpreprint.bsky.social
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
The Pfam protein families database: embracing AI/ML. #Pfam #ProteinDomains #GenomeAnnotation #AI #NAR #Bioinformatics 🧬 🖥️
academic.oup.com/nar/advance-...
academic.oup.com/nar/advance-...
The Pfam protein families database: embracing AI/ML
Abstract. The Pfam protein families database is a comprehensive collection of protein domains and families used for genome annotation and protein structure
academic.oup.com
November 26, 2024 at 12:07 AM
The Pfam protein families database: embracing AI/ML. #Pfam #ProteinDomains #GenomeAnnotation #AI #NAR #Bioinformatics 🧬 🖥️
academic.oup.com/nar/advance-...
academic.oup.com/nar/advance-...
The rice genome annotation project: an updated database for mining the rice genome. #RiceGenome #GenomeAnnotation #NAR 🧬 🖥️
academic.oup.com/nar/advance-...
academic.oup.com/nar/advance-...
The rice genome annotation project: an updated database for mining the rice genome
Abstract. Rice (Oryza sativa L.) is a major cereal crop that provides calories across the world. With a small genome, rice has been used extensively as a m
academic.oup.com
November 25, 2024 at 11:59 PM
The rice genome annotation project: an updated database for mining the rice genome. #RiceGenome #GenomeAnnotation #NAR 🧬 🖥️
academic.oup.com/nar/advance-...
academic.oup.com/nar/advance-...
Interested in #GenomeAssembly & #GenomeAnnotation?
Join our March course to learn how to create high-quality, haplotype-phased genomes using Illumina, @pacbio.bsky.social @nanoporetech.com & more.
www.physalia-courses.org/courses-work...
#Genomics #Bioinformatics @vertebrategenomes.bsky.social
Join our March course to learn how to create high-quality, haplotype-phased genomes using Illumina, @pacbio.bsky.social @nanoporetech.com & more.
www.physalia-courses.org/courses-work...
#Genomics #Bioinformatics @vertebrategenomes.bsky.social
January 28, 2026 at 1:11 PM
Interested in #GenomeAssembly & #GenomeAnnotation?
Join our March course to learn how to create high-quality, haplotype-phased genomes using Illumina, @pacbio.bsky.social @nanoporetech.com & more.
www.physalia-courses.org/courses-work...
#Genomics #Bioinformatics @vertebrategenomes.bsky.social
Join our March course to learn how to create high-quality, haplotype-phased genomes using Illumina, @pacbio.bsky.social @nanoporetech.com & more.
www.physalia-courses.org/courses-work...
#Genomics #Bioinformatics @vertebrategenomes.bsky.social
🚀 We’ve just kicked off our Introduction to Genome Annotation course with Francesco Cicconardi & Tereza Manousaki!
Excited to dive into gene prediction, transcriptome assembly, and annotation strategies with participants from around the globe. 🧬💻
#GenomeAnnotation #Bioinformatics
Excited to dive into gene prediction, transcriptome assembly, and annotation strategies with participants from around the globe. 🧬💻
#GenomeAnnotation #Bioinformatics
May 19, 2025 at 4:37 PM
🚀 We’ve just kicked off our Introduction to Genome Annotation course with Francesco Cicconardi & Tereza Manousaki!
Excited to dive into gene prediction, transcriptome assembly, and annotation strategies with participants from around the globe. 🧬💻
#GenomeAnnotation #Bioinformatics
Excited to dive into gene prediction, transcriptome assembly, and annotation strategies with participants from around the globe. 🧬💻
#GenomeAnnotation #Bioinformatics
Don't miss our upcoming #GenomeAssembly and #GenomeAnnotation course in March with
@giulio_formenti and @GuidoRGallo! Course Details: physalia-courses.org/courses-work...
Join us to enhance your knowledge and skills in genome assembly and annotation! #Bioinformatics
@giulio_formenti and @GuidoRGallo! Course Details: physalia-courses.org/courses-work...
Join us to enhance your knowledge and skills in genome assembly and annotation! #Bioinformatics
October 26, 2023 at 1:50 PM
Don't miss our upcoming #GenomeAssembly and #GenomeAnnotation course in March with
@giulio_formenti and @GuidoRGallo! Course Details: physalia-courses.org/courses-work...
Join us to enhance your knowledge and skills in genome assembly and annotation! #Bioinformatics
@giulio_formenti and @GuidoRGallo! Course Details: physalia-courses.org/courses-work...
Join us to enhance your knowledge and skills in genome assembly and annotation! #Bioinformatics
#TEsky #TEworldwide #Transposons #Bioinformatics #Bioconda #GenomeAnnotation #TransposableElements #Genomics #ComparativeGenomics
☕Earl Grey v7.0.0 brewed fresh☕
Nested TEs finally get the treatment they deserve: iterative detection of deep nesting, cleaner GFF annotations, and coverage stats that don’t double-count genomic space + a RepeatCraft edge-case fix.
Happy new year to the TE folks! 🧬
github.com/TobyBaril/Ea...
Nested TEs finally get the treatment they deserve: iterative detection of deep nesting, cleaner GFF annotations, and coverage stats that don’t double-count genomic space + a RepeatCraft edge-case fix.
Happy new year to the TE folks! 🧬
github.com/TobyBaril/Ea...
GitHub - TobyBaril/EarlGrey: Earl Grey: A fully automated TE curation and annotation pipeline
Earl Grey: A fully automated TE curation and annotation pipeline - TobyBaril/EarlGrey
github.com
January 5, 2026 at 3:12 PM
Join our Virtual Genome Annotation Workshop on May 19-21! 🧬 Learn Linux, genome assembly, evidence-based annotation, + evaluation. No experience needed!
📅 10 AM – 2 PM ET
💻 MS Teams + recording
💰 $600 ($500 UConn)
Register: bioinformatics.uconn.edu/cbc-workshops/
#GenomeAnnotation #Bioinformatics
📅 10 AM – 2 PM ET
💻 MS Teams + recording
💰 $600 ($500 UConn)
Register: bioinformatics.uconn.edu/cbc-workshops/
#GenomeAnnotation #Bioinformatics
April 7, 2026 at 6:30 PM
Join our Virtual Genome Annotation Workshop on May 19-21! 🧬 Learn Linux, genome assembly, evidence-based annotation, + evaluation. No experience needed!
📅 10 AM – 2 PM ET
💻 MS Teams + recording
💰 $600 ($500 UConn)
Register: bioinformatics.uconn.edu/cbc-workshops/
#GenomeAnnotation #Bioinformatics
📅 10 AM – 2 PM ET
💻 MS Teams + recording
💰 $600 ($500 UConn)
Register: bioinformatics.uconn.edu/cbc-workshops/
#GenomeAnnotation #Bioinformatics