#BioimageAnalysis
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dctomaz.bsky.social
AI models learned cellular features from ~1.77 million Cell Painting images and improved benchmark retrieval over CellProfiler. Better image representations still need biological interpretation. 🔬
#BioimageAnalysis
Nature Methods ·
doi.org/10.1038/s415...
Advancing morphological profiling with self-supervised learning through comparative insights into representation learning of cellular perturbations - Nature Methods
This Article presents a large-scale analysis of self-supervised learning methods for high-content morphological profiling.
doi.org
November 1, 2026 at 7:22 AM
cci-liv.bsky.social
Thanks to all authors and the HPC teams at the Crick, VIB/VSC and Liverpool. If you run an imaging facility, we hope this helps you decide whether, and how, to take the step. Comments welcome! 7/9
#bioimaging #HPC #bioimageanalysis #corefacilities
October 30, 2026 at 11:01 AM
cci-liv.bsky.social
Code, step-by-step beginner guide and documentation (Python notebook and a Matlab version): github.com/Marien-kaefe...
Feedback and questions welcome!
#bioimageanalysis #bioimaging #cardiacresearch #opensource #microscopy
GitHub - Marien-kaefer/BeatRatePy
Contribute to Marien-kaefer/BeatRatePy development by creating an account on GitHub.
github.com
October 29, 2026 at 9:54 AM
stratocore.bsky.social
Proud to sponsor #CBIAS2026! 🔬📊

The @crick.ac.uk BioImage Analysis Symposium program is live (Nov 23–24, hybrid).

🔗 https://f.mtr.cool/vk4hi8lyp2

#BioImageAnalysis #CoreFacilities
Crick BioImage Analysis Symposium 2026
f.mtr.cool
October 22, 2026 at 9:04 AM
bethcimini.bsky.social
Big news! Our week-long #bioimageanalysis bootcamp is BACK! Learn how to think about bioimage analysis like the pros do, learn what corrections you should (and shouldn't!) apply to your images, learn open source tools, and more. Apply NOW at broad.io/BAB3 for our January 2027 course!
Bioimage Analysis Beginnings Bootcamp
Thank you for your interest in our bootcamp. Details are below. Applications are due by November 16th. This course is designed to teach bioimage analysis decision-making principles (how do I decide ...
broad.io
October 20, 2026 at 3:41 PM
nfriederich.bsky.social
New application note: napari-TurboBox ⚡📦, a napari plugin for 3D bounding-box annotation. Edit a box in one slice and follow it live in the orthogonal views: ~2 ms per mouse move even with 10⁴ boxes, 79× faster than napari-bbox.

📄 arxiv.org/abs/2610.22413

#napari #BioimageAnalysis #Annotation
October 20, 2026 at 10:44 AM
loicaroyer.bsky.social
The hidden test set came from different embryos than the training data, and the final leaderboard reshuffled a lot: 2nd place climbed 26 spots, 6th climbed 88.

Generalising across embryos is the real challenge, and it's the one that matters in the lab. #BioImageAnalysis
October 6, 2026 at 2:13 AM
acorbat.bsky.social
Intentional mentorship builds stronger, more supportive scientific communities.

Huge thanks to @latambioimaging.bsky.social for hosting this event, and to Hernan Grecco & Maria Victoria Repetto for their invaluable guidance in designing it! 🙌

#Mentorship #BioimageAnalysis #AcademicMobility
September 22, 2026 at 7:59 PM
uk-bias.bsky.social
Drowning in Image data? Know there’s a better way to analyse it, but don’t know where to start?

📣 UK-BIAS to the rescue!

👩‍💻🧑‍💻👨‍💻We’re the first dedicated #BioImageAnalysis service in the UK-node of @eurobioimaging.bsky.social bringing together specialists from ten UK institutions. 👩‍💻🧑‍💻👨‍💻
September 17, 2026 at 3:10 PM
fabmusacchio.bsky.social
🚀Another #MotilA update this morning: v1.1.3 brings optional #CSV & #YAML export, which makes MotilA less reliant on proprietary file formats. … And: MotilA got its first logo 🤗

🌍 motila.readthedocs.io/en/latest/ch...

#BioimageAnalysis #microglia #motility #Python
A smiling cartoon cell with colorful extensions and the text "MotilA" below, representing a Python-based image analysis pipeline.
August 12, 2026 at 6:23 AM
fabmusacchio.bsky.social
#OMIO is meanwhile at v0.2.9 🚀

Main focus last week was making #Thorlabs RAW handling more robust: Better #XML/ #YAML #metadata fallback, support for batch-friendly error handling, & clearer diagnostics when metadata doesn’t match the data.

🌍 omio.readthedocs.io/en/latest/ch...

#BioimageAnalysis
August 11, 2026 at 12:08 PM
pm-lab.bsky.social
🚨 Job Alert 🚨🔬🧪👩‍💻🖥️ Are you interested in #BioimageAnalysis #ComputerVision #AI #ML methods for the #LifeSciences? Do you want to work on #DigitalPathology of tissues, cells, organelles? Check out this #PostDoc opportunity in a collaboration with Jens Rittscher from @oxengsci.bsky.social @ox.ac.uk
Research assistant / Post-doctoral fellow image analysis - Center for Stroke Research DM.16.25
full-time | 21.02.2025 | Campus Charité Mitte
karriere.charite.de
February 7, 2025 at 8:47 AM
pm-lab.bsky.social
Phindr3D doesn’t require segmentation of cells to learn #3D features from the microscopy image data set. #MachineLearning #BioImageAnalysis
November 22, 2024 at 7:50 PM
pm-lab.bsky.social
Phindr3D uses unsupervised data-driven feature learning which enables computationally facile classification, clustering and data visualization. Unbiased quantitative phenotypic #BioImageAnalysis of #3D #microscopy images in #HighContentScreening is a fundamental challenge.
November 22, 2024 at 7:50 PM
academiceurope.bsky.social
Job - Alert 🧬

🎓 MASTERS INTERN (M/F/D): MACHINE LEARNING AND BIOIMAGE ANALYSIS

Deadline: 2025-03-31
Location: Germany, Dortmund, Nordrhein Westfalen

www.academiceurope.com/job/?id=7080

#hiring #MastersInternship #BioimageAnalysis #computerscience #statistics #BiomedicalSciences #Mathematics
Academic Europe - Masters Intern (m/f/d): Machine learning and bioimage analysis
www.academiceurope.com
March 5, 2025 at 7:36 AM
sonjzzz.bsky.social
Special thanks to our imaging facilities in Adelaide, collaborators interstate and abroad and the developers and advisors of open source AI tools, and team behind ilastik, LABkit and CellPose whose contributions are driving innovation in #Bioimageanalysis #EndMalaria #NCRISimpact #AIinScience
February 4, 2025 at 10:42 PM
france-bioimaging.bsky.social
[TRAINING] Apply for the new EMBO Course📢

Practical courses on advanced #bioimageanalysis, including image analysis workflows, data management, deep-learning...

For early-career/image analysis scientists

📅 Sep 14–19, 2025
🌍 On site or online
📌Apply by June 4
🔗Link in coms
May 6, 2025 at 9:31 AM
france-bioimaging.bsky.social
[NEWS] Last week, FBI was proud to attend the IEEE annual congress, #ISBI2025, in Houston

Our Challenge Officer, Dorian Kauffmann, presented the results of "Fuse My Cells" Challenge, the 2nd ed. of this deep-learning competition in #BioimageAnalysis

He was joined by the winner: Marek Wodzinski 👏
April 24, 2025 at 2:45 PM
haesleinhuepf.bsky.social
I gave two seminars at @embl.org Heidelberg these days: One about using LLMs via #biabob for #BioImageAnalysis and one about how LLMs impact BioImage #DataScience
Thanks EMBL for having me!
Materials #openaccess 🧑‍🏫🖥️🔓
zenodo.org/records/1705...
zenodo.org/records/1710...
scads.github.io/llm-bia-2025
September 16, 2025 at 7:02 PM
haesleinhuepf.bsky.social
Check out this masterpiece of systematic #BioImageAnalysis 🤩
August 30, 2025 at 9:34 AM
haesleinhuepf.bsky.social
My tutorial materials & slides about #Reproducible #BioImageAnalysis using Python, Napari, Jupyter and #AI are available #openaccess.
Thanks to #EMBOlsm25 for having me! It so great to visit friends at my former academic home campus for a couple of days 🤩
scads.github.io/embo-lsm-bia...
August 12, 2025 at 5:57 PM
haesleinhuepf.bsky.social
Are you a #BioImageAnalysis pro? Challenge your skills by playing #BIAbubbles! 🎉
Find the right workflows and reproduce the result! 🔬🖥️🕹️
And if you have challenging BIA tasks, new level contributions are welcome! 😀
github.com/haesleinhuep...
April 25, 2025 at 7:28 PM
haesleinhuepf.bsky.social
My slides about "Learning and Training #BioImageAnalysis in the Age of AI" presented at the @globias.bsky.social @carpentries.carpentries.org workshop are available #openaccess. Big thanks for hosting us @istaustria-iof.bsky.social ! 🔬🖥️🤖
zenodo.org/records/1516...
April 7, 2025 at 7:16 PM
haesleinhuepf.bsky.social
The claude 3.5 sonnet "new" model (versioning 🤦) currently leads the #BioImageAnalysis #CodeGen benchmark, o1-mini is on place 4, o1 was to expensive to try. You find details in the github repo:
github.com/haesleinhuep...
December 21, 2024 at 7:24 AM
haesleinhuepf.bsky.social
A little #milestone for the #biabob project:
💯 Github Stars ⭐⭐⭐ 🚀
I'm happy to see the growing community using #biabob as
#BioImageAnalysis Coding Assistant in Jupyter.
I would love to learn more about what people use it for! Feel free to share screenshots below 😃
github.com/haesleinhuep...
December 18, 2024 at 11:06 AM