#ChIPseq
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seqera.io
Intelligent Compute delivered on average:
✅ 59-86% lower costs
✅ 42-55% fewer CPU hours
✅ 16-49% faster wallclock time

🔗 Read the benchmarks blog: hubs.la/Q04Bgrl10
Benchmarking Seqera Intelligent Compute on AWS, Azure and Google Cloud: nf-core Pipeline Results
We comparing Intelligent Compute with Azure Batch and Google Cloud Batch across seven nf-core pipelines: rnaseq, sarek, atacseq, chipseq, nanoseq, and viralrecon.
hubs.la
October 15, 2026 at 1:41 PM
seqera.io
Seqera Intelligent Compute is a new-generation compute service that abstracts away the complexity of scaling @nextflow.io pipelines in the cloud.☁️We benchmarked it against the native batch services of AWS, Azure and Google Cloud using popular @nf-co.re pipelines.🧵 hubs.la/Q04Bgrl10
Benchmarking Seqera Intelligent Compute on AWS, Azure and Google Cloud: nf-core Pipeline Results
We comparing Intelligent Compute with Azure Batch and Google Cloud Batch across seven nf-core pipelines: rnaseq, sarek, atacseq, chipseq, nanoseq, and viralrecon.
hubs.la
October 15, 2026 at 1:41 PM
nextflow.io
Stop paying for wasted resources.💡Michael Tansini just showed how @seqera.io Intelligent Compute can significantly cut costs, benchmarked on real @nf-co.re pipelines. Now expanded to Azure and GCP!📕 Learn more: hubs.la/Q04B63F40 #NextflowSummit
Benchmarking Seqera Intelligent Compute on AWS, Azure and Google Cloud: nf-core Pipeline Results
We comparing Intelligent Compute with Azure Batch and Google Cloud Batch across seven nf-core pipelines: rnaseq, sarek, atacseq, chipseq, nanoseq, and viralrecon.
hubs.la
October 14, 2026 at 12:03 PM
epivinf.bsky.social
ChIP-seq is a technique that helps to find out where specific proteins attach to DNA. Why is this useful? Because these proteins can help control which genes are switched on or off.

#DNA #Proteins #Tecnique #ChIPseq
October 13, 2026 at 12:16 PM
epigenometech.bsky.social
Learn about single-cell epigenetic profiling by downloading our guide to single-cell CUT&Tag and single-cell Paired-Tag, which provides comparisons to other methods and bioinformatic insight

#Epigenetics #Multiomics #CUTandTag #10XGgenomics #ChIPSeq #SingleCell #PairedTag

u.epigenome.us/mHSAqLpl
October 2, 2026 at 8:08 PM
epigenometech.bsky.social
Our expansion of single-cell epigenetics assays continues!

The Epigenome Technologies scCUT&Tag assay is now compatible with the BD Rhapsody platform

#Epigenetics #BDrhapsody #CUTandTag #Chromatin #Multiomics #Singlecell #CUTandRUN #ChIPseq #ATACseq

Learn more here: u.epigenome.us/NYjSGQao
October 1, 2026 at 7:32 PM
gpbees.bsky.social
6/ 📖 Read the full article:

MACS3: A Peak-calling Platform for Bulk and Single-cell Regulatory Genomics

🔗 academic.oup.com/gpb/advance-...

💻 MACS3: github.com/macs3-projec...

#Bioinformatics #Epigenomics #SingleCell #ATACseq #ChIPseq #RegulatoryGenomics
MACS3: A Peak-calling Platform for Bulk and Single-cell Regulatory Genomics
Abstract. Since the original publication of Model-based Analysis for ChIP-Seq (MACS), the software has been widely used to identify enriched genomic region
academic.oup.com
September 18, 2026 at 12:14 PM
rachellcosby.bsky.social
Among the variants identified uniquely in our infertility cohorts, 5 rare variants, all paired with the common A allele, stood out as functional outliers. 2 were "gain of function" (redirected binding to new sites) and 3 were essentially "null" (minimal DNA binding). /11
Binding heatmap showing binding strength as measured by anti-FLAG ChIPseq for the A variant and outlier variants identified in the infertility cohorts.
September 16, 2026 at 3:33 PM
epigenometech.bsky.social
Our expansion of single-cell epigenetics assays continues!

The Epigenome Technologies scCUT&Tag assay is now compatible with the BD Rhapsody platform

#Epigenetics #BDrhapsody #CUTandTag #Chromatin #Multiomics #Singlecell #CUTandRUN #ChIPseq #ATACseq

Learn more here: u.epigenome.us/NYjSGQao
September 11, 2026 at 6:52 PM
marcrr.ecoevo.social.ap.brid.gy
Hamed Najafabadi: GHT-Selex: in vitro profiling of TF binding, on genomic fragments instead of synthetic DNA -> allow analysis of genomic information. Results very similar to ChIPseq, with extra info on binding affinity from enrichment cycles. #eccb2026
https://doi.org/10.1038/s41592-026-03177-9
GHT-SELEX demonstrates unexpectedly high intrinsic sequence specificity and complex DNA binding of many human transcription factors - Nature Methods
GHT-SELEX—high-throughput SELEX with fragmented genomic DNA—shows that transcription factors can be rather particular about which genomic loci they bind, and that C2H2 zinc finger proteins often engage different fingers at different sites.
www.nature.com
September 2, 2026 at 7:09 AM
marcrr.ecoevo.social.ap.brid.gy
Najafabadi: GHT-Selex + ChIPseq allows to identify alternative binding sites for even well known TFs, such as CTCF. #eccb2026
e.g. https://www.nature.com/articles/s41592-026-03177-9/figures/5
Fig. 5: Alternative engagement of individual C2H2-zf domains at genomic binding sites inferred from the recognition code. | Nature Methods | Nature Methods
figure 5
www.nature.com
September 2, 2026 at 7:16 AM
r2platform.bsky.social
Test the genes as a result of your Claude AI / OpenAI prompts in >580,000 bulk samples with ease in R2: the open online nocode data platform for biomedical researchers r2platform.com

R2 also serves millions of single cells, thousands of chipseq samples and more to assist in your analyses

#claudeAI
August 26, 2026 at 5:20 AM
epigenometech.bsky.social
Learn about single-cell epigenetic profiling by downloading our guide to single-cell CUT&Tag and single-cell Paired-Tag, which provides comparisons to other methods/bioinformatic insight

#Epigenetics #Multiomics #CUTandTag #10XGgenomics #ChIPSeq #SingleCell #PairedTag

u.epigenome.us/mHSAqLpl
August 14, 2026 at 7:24 PM
epigenometech.bsky.social
Our expansion of single-cell epigenetics assays continues!

The Epigenome Technologies scCUT&Tag assay is now compatible with the BD Rhapsody platform

#Epigenetics #BDrhapsody #CUTandTag #Chromatin #Multiomics #Singlecell #CUTandRUN #ChIPseq #ATACseq

Learn more here: u.epigenome.us/NYjSGQao
August 13, 2026 at 8:01 PM
edballister.bsky.social
Just because we CAN ask a question about some group of people, just because we have a great set of assays like ChIPSeq that can generate tons of data, doesn’t mean every application generates meaningful data or ethically, socially sound science
March 8, 2025 at 11:28 AM
novogene-europe.bsky.social
Discover DNA-protein interactions with Novogene ChIP-Seq. We perform immunoprecipitation, library prep and deep sequencing to map transcription factors, histone modifications and regulatory elements. #ChIPSeq #Epigenomics #GeneRegulation https://tinyurl.com/59phhh2c
June 7, 2026 at 7:05 AM
novogene-europe.bsky.social
Discover DNA-protein interactions with Novogene ChIP-Seq. We perform immunoprecipitation, library prep and deep sequencing to map transcription factors, histone modifications and regulatory elements. #ChIPSeq #Epigenomics #GeneRegulation https://tinyurl.com/59phhh2c
April 9, 2026 at 7:05 AM
novogene-europe.bsky.social
Discover DNA-protein interactions with Novogene ChIP-Seq. We perform immunoprecipitation, library prep and deep sequencing to map transcription factors, histone modifications and regulatory elements. #ChIPSeq #Epigenomics #GeneRegulation https://bit.ly/4gXbq3G
February 13, 2026 at 8:05 AM
novogene-europe.bsky.social
Join us for our July #webinar, where Armaan will cover an overview of #epigenetics, how to incorporate #ChIPseq, #RIPseq, #ATACseq, #EMseq and DNA #methylation in your own epigenetics projects.

Register here: bit.ly/4e25SUe

#novogene #nextgenerationsequencing #ngs
June 10, 2025 at 12:47 PM
pradeepmadapura.bsky.social
Now that I have read this paper, my lab has new findings based on CUT&Tag data that challenge the traditional view of euchromatic and repressive factors. I have started doubting all previous ChIPseq-based conclusions for many targets we are interested in. Thanks for publishing the preprint
February 6, 2025 at 5:55 PM
cnag-eu.bsky.social
2️⃣ 𝘛𝘩𝘦 𝘧𝘪𝘳𝘴𝘵 𝘴𝘵𝘦𝘱
To provide new answers to these questions, researchers began by obtaining the tiny gonadal cell populations before and after sex determination. Surprisingly, even using Hi-C and ChIP-seq, only minimal 3D chromatin changes were observed

#3DGenome #Nature #Research #HiC #ChIPSeq
February 24, 2026 at 10:21 AM
babraham-bioinf.bsky.social
Check out our #TrainingTuesday #Bioinformatics and #statistics training opportunities
www.bioinformatics.babraham.ac.uk/training.html
We have #ChIPSeq and #ATACSeq data analysis training coming up! #ComputationalBiology #ResearchScientce #ECR #PhD
Training course dates and topics as per link
February 11, 2025 at 12:39 PM
nf-co.re
Pipeline release! nf-core/chipseq v2.1.0 - nf-core/chipseq v2.1.0 - Platinum Willow Sparrow!

Please see the changelog: https://github.com/nf-core/chipseq/releases/tag/2.1.0
October 7, 2024 at 3:14 PM