#ATACSeq
LightNews LightNews
posnienlab.bsky.social
You want to apply #ATACseq in your emerging model organism, but you don't know where to start? Is #ATACseq the best method for my research questions? Search no more! We got you covered with our new review: doi.org/10.1002/jez.... Excellent collaboration with @gevol.bsky.social
ATAC‐seq in Emerging Model Organisms: Challenges and Strategies
Principle of ATAC-seq (left), overview of arthropod species with published ATAC-seq data (middle), summary of experimental design (right).
doi.org
June 2, 2025 at 8:24 AM
xgrau.bsky.social
A single-cell ATACseq atlas of our favourite sea anemone, Nematostella vectensis! By @aelek.bsky.social @martaig.bsky.social
UMAP 2D projections of single-cell ATAC atlases of a Nematostella gastrula (left) and an adult specimen (right)
July 4, 2025 at 10:27 AM
plger.bsky.social
Sharing a new preprint about technical variation in (bulk/ #SingleCell ) #ATACseq and motif accessibility analyses, and methods to correct for them www.biorxiv.org/content/10.6...
August 26, 2026 at 7:32 AM
epicypher.bsky.social
How does our new CUTANA™ ATAC-seq Kit perform?

In head-to-head testing the CUTANA™ ATAC-seq Kit maintained peak signal and TSS enrichment across every input tested, while a leading competitor’s kit weakened progressively.

Explore data here: https://ow.ly/vgh550ZQNYS

#ATACseq
September 24, 2026 at 1:55 PM
haoyin.bsky.social
Adipocyte diversity in🐷#IntraMuscularFat
N=13 2 breeds 180-d
Longissimus dorsi muscle (0.2~2.7% fat)

scRNAseq + bulk RNAseq ATACseq

Markers
Adipocyte_1 FABP4 CCN3 CCL2
Adipocyte_2 FOS LPL
Aregs SLPI CXCL2

Genomics 2025
www.sciencedirect.com/science/arti...
March 8, 2025 at 11:53 AM
minashaigan.bsky.social
Great conversations and inspiring vibes at @events.embl.org — felt amazing to share my work and hear from incredible speakers!
#EESAgeing #SingleCell #Aging #ATACseq #RNAseq #Immunology #Multiomics #scRNAseq #scATACseq
June 11, 2025 at 3:45 PM
robertife.bsky.social
Please RT 📧
Registration open for ➡️"Summer School on Chromatin Biology" Our 2 weeks hands on expedition 🧪👩‍💻August 2026. 3. edition. Learn CUT@Tag, CUT@Run, ChIPseq, ATACseq AND to analyse your own data at @helmholtzmunich.bsky.social Daily letures by experts in the field !

▶️ shorturl.at/jrA8i
December 9, 2025 at 11:59 AM
robertife.bsky.social
Dont miss out on it ! Hands on Summer School.
Cut&Run, Cut@Tag, ChIP, ATACseq and analyse your own data ! ➡️Unique opportunity ! 14 exiting days ➕ Daily high profile lectures.
👉 Applications & info: bit.ly/4oGDR8f
helmholtzmunich.bsky.social Helmholtz Munich @helmholtzmunich.bsky.social · Feb 2
The Epigenetics Community at #HelmholtzMunich, together with #Abcam, is hosting the 3rd #Chromatin #SummerSchool in Munich:

📆 17–29 August 2026
⏰ Apply by March 29, 2026

👉 Applications & info: bit.ly/4oGDR8f

@epihmgu.bsky.social @metorrespadilla.bsky.social @robertife.bsky.social
Summer School on Chromatin Biology 2026 Hands-on Expedition at Helmholtz Munich
February 2, 2026 at 9:56 AM
chansenwheat.bsky.social
JOB ALERT!

What is the cost of making color in butterfly wings?

Postdoc opening studying life-history tradeoffs using function genomics (CRISPR, ATACseq, CHIPseq, ssRNAseq) at Stockholm University.

t.co/ToErH8ITM5

🌍🧪 #AcademicSky #HigherEd #WomeninSTEM #EcoECRcareer
February 8, 2024 at 8:46 AM
siegenthalerlab.bsky.social
Dr. Bones took their research in a new direction this year & jumped on the world of ATACseq & CUT&RUN for histone marks, TF binding this year...Dr. Bones is delighted by the findings. They are hoping your 2024 projects were equally as illuminating. 💡
picture of full size skeleton wearing a pink cowboy hat and sitting on a blue stool at a lab bench; box on bench reads "EpiCyper CUTANA' skeleton wearing a blue hat and lab coat standing a lab bench looking at a computer screen - screen show IGV browser open
December 18, 2024 at 10:02 PM
babraham-bioinf.bsky.social
Check out our #TrainingTuesday #Bioinformatics and #statistics training opportunities
www.bioinformatics.babraham.ac.uk/training.html
We have #ChIPSeq and #ATACSeq data analysis training coming up! #ComputationalBiology #ResearchScientce #ECR #PhD
Training course dates and topics as per link
February 11, 2025 at 12:39 PM
alejofraticelli.bsky.social
We have a study comparing different HSC populations where the ATACseq signal is minimal (including footprint analyses), but the TF-target analysis predicts distinct TF activities... how would you validate - other than doing the actual TF perturbations? @saezlab.bsky.social @jbuenrostro.bsky.social
July 31, 2025 at 4:11 PM
haoyin.bsky.social
MechanoEnhancer

Fibroblast
Matrix Stiffness 50 vs 1 kPa

👉Bulk RNAseq
👉On-plate Omni ATACseq (NO detachment required🤠) ▶️Anoikis mechanoenhancer (BMF)
👉HiCAR
👉CRSIPRi epigenomic editing

21.8% putative mechanoenhancers "skipped 5 or more genes"😎

#Science 2025
www.science.org/doi/10.1126/...
December 21, 2025 at 1:27 PM
haoyin.bsky.social
spatial-Mux-seq
Amazing spatial multiomics😍

ATACseq➡️>1500 unique fragments per 20 µm pixel
H3K27me3 CUT&Tag ➡️>1000 ufrg/px
H3K27ac CUT&Tag➡️>400 ufrg/px
RNAseq➡️>1400 gene/px
122 Proteins➡️>80 protein/px

Frozen🐭🧠section

www.protocols.io/private/1EB1...

#NatMethod 2025
www.nature.com/articles/s41...
October 27, 2025 at 11:53 AM
eddpasquier.bsky.social
Beautiful study by @sloanlab.bsky.social and colleagues using scRNAseq/ATACseq to delineate the course of human astrocyte maturation and identify developmental programs that are disrupted in glioblastoma.

Just out in @naturecellbiology.bsky.social

And a wonderful Bluetorial to go with it ⤵️
sloanlab.bsky.social Steven Sloan @sloanlab.bsky.social · Jan 8
First 🦋 post! Very excited to share our lab's latest work exploring the shared and divergent aspects of human astrocyte development and glioblastoma. This effort spans many fields from developmental #glial biology to #stem cells and #tumor biology. rdcu.be/d5ADz A 🧵
Mapping the developmental trajectory of human astrocytes reveals divergence in glioblastoma
Nature Cell Biology - Sojka et al. analyse the transcriptomic and epigenomic landscape of human astrocyte maturation and identify an epigenetically regulated intermediate state associated with...
rdcu.be
January 8, 2025 at 11:10 PM
robertife.bsky.social
Fellowship application dealdine for students from low income countries 🌐will be in 1️⃣ week.
Dont miss out on this opportunity ! Hands on Summer School.
Cut&Run, Cut@Tag, ChIP, ATACseq and analyse your own data ! ➡️Unique opportunity ! 15 exiting days ➕ Daily high profile lectures.
👉 bit.ly/4oGDR8f
February 20, 2026 at 10:34 AM
daniorecode.bsky.social
🐟Last September, DANIO-ReCODE Consortium DCs joined:
🥼"ATACseq and RNAseq in zebrafish embryos" course by @anafminan.bsky.social and Dr Silvia Naranjo-Durán
📢Great seminars by @jrmarmor.bsky.social,@crisprscan.bsky.social and Dr JJ Tena
#DANIO #MSCA @cabd-upo-csic.bsky.social @pablodeolavide.upo.es
October 6, 2025 at 10:08 AM
epigenometech.bsky.social
Our expansion of single-cell epigenetics assays continues!

The Epigenome Technologies scCUT&Tag assay is now compatible with the BD Rhapsody platform

#Epigenetics #BDrhapsody #CUTandTag #Chromatin #Multiomics #Singlecell #CUTandRUN #ChIPseq #ATACseq

Learn more here: u.epigenome.us/NYjSGQao
August 13, 2026 at 8:01 PM
jsantoyo.bsky.social
ShortCake: An integrated platform for efficient and reproducible single-cell analysis. #SingleCell #RNAseq #ATACseq #Docker #Bioinformatics #Genomics
academic.oup.com/bioinformati...
October 25, 2025 at 8:31 AM
tommytang.bsky.social
I almost sent a figure with wrong cluster labels to my collaborators. The R code ran perfectly. No errors, no warnings.

I caught it because cluster 2 showed upregulated genes in RNAseq but reduced chromatin accessibility in ATACseq. Biologically, that's backwards.
March 26, 2026 at 1:15 PM
homeobox.bsky.social
We also inspected ATACseq data sets & found peaks of open chromatin which coincided with the LARM2 hits from our Holostean Bridge alignments. To test if this expanded interval contained the LARM regulatory information we made a larger ~7 kb LARM deletion in the zebrafish encompassing LARM1 and LARM2
A plot of ATACseq data along the lmx1bb locus
July 7, 2025 at 6:47 AM
haoyin.bsky.social
Map of #QuantitativeTraitLoci for TCF21 binding (ChIPseq), chromatin accessibility (ATACseq), & chromosomal looping (Hi-C) in 👤coronary artery SMC

CRISPRi (dCas9-KRAB) to assess allele-specific effects

Thomas Quertermous lab #GenomBiol 2020
genomebiology.biomedcentral.com/articles/10....
January 2, 2026 at 8:22 PM
eliisakekalainen.bsky.social
Need help! The most cost effective sequencing service for ready libraries for single-cell ATAC-seq? Share your best tips! Have money, just not lots of it. #sequencing #singlecell #atacseq
March 3, 2026 at 6:35 AM
bmnina.bsky.social
Hormone sensitivity assay, promoter-GUS/FP fusions to understand spatiotemporal TF distribution, single cell RNAseq, ATACseq, metabolite analysis (LC-MS/MS).
Ok. I'll stop. It's turning into a wishlist.
April 23, 2025 at 12:39 AM
narjournal.bsky.social
A new @NARCancer study shows ECM stiffness drives prostate cancer aggression 😱—with softer ECM boosting androgen response 💪. ECM isn’t just a structure; it also acts as a signal. Read the full article here: doi.org/10.1093/narc... #ProstateCancer #ECM #NARCancer #ATACseq #RNAseq @uniuef.bsky.social
May 12, 2025 at 4:21 AM