#singlecellanalysis
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keystonesymposia.bsky.social
Submit your abstracts or scholarship applications by Feb. 11 (11:59pm MST) to present alongside experts like Matthew F. Krummel & Gordana V. Vunjak-Novakovic. See you in May! keysym.us/KSSingleCell25

#KSSingleCell25 #singlecellbiology #singlecellanalysis #cellatlas #tissueatlas #spatialomics
January 29, 2025 at 7:11 PM
dossola.bsky.social
4/📍 May 5–6 | Basel
#BiotechInnovation #Biotech #SingleCell #SingleCellAnalysis #CellEngineering #MeetMeThere
May 4, 2025 at 9:19 AM
cancerdynamics.bsky.social
🚨 Deadline Extended!
Apply for the IICD Intensive Workshop by April 21st!
🔬Open to grad students & postdocs
📅 June 23-27, 2025
🔗 bit.ly/IICDworkshop
#Bioinformatics #CancerResearch #SingleCellAnalysis @elhamazizi.bsky.social
ICD Intensive Workshop: Methods in Single-Cell Data Integration and Optimal Transport logo
April 17, 2025 at 2:43 PM
bgee.org
@SIB.mstdn.science.ap.brid.gy @marcrr.bsky.social @dee-unil.bsky.social
#bgee #Bioinformatics #RNASequencing #SingleCellRNASeq #Genomics #Transcriptomics #GeneExpression #ComputationalBiology #SingleCellAnalysis #GeneExpressionAnalysis
October 3, 2024 at 12:46 PM
optobiolabs.bsky.social
#SynBioReactor will start soon in #Berlin!

Come to my pitch tomorrow on Feb 7!

Talk to me about #optogenetics #biofermentation #singlecellanalysis
February 6, 2025 at 9:41 AM
scienceszti.bsky.social
Wanna learn more about the importance of #SingleCellAnalysis? Check out our pitch film!
#SciComUU25

www.youtube.com/watch?v=Aypo...
Analytical chemistry pitch film: Cell-ebrating analytical chemistry
YouTube video by Kemisamfundet
www.youtube.com
May 31, 2025 at 2:35 PM
analyticalsci.bsky.social
Single-cell science is moving beyond transcriptomics.
From multi-omics to spatial profiling, the next era is redefining how we decode biology and disease.

Read the expert insights: www.theanalyticalscientist.com/issues/2025/...

#SingleCellAnalysis #Omics #Innovatio
Single Cell Analysis: Beyond The Transcriptome
<p>The future of single-cell analysis lies in multi-omics, analytical depth, real time live cell analysis, and global accessibility – not just more sequencing </p>
www.theanalyticalscientist.com
July 25, 2025 at 2:11 PM
s2genomics.bsky.social
🔬 Unlocking Tumor Complexity with Single-Cell Analysis! 🔬
Oncology research demands precision. Reliable sample prep is key to revealing tumor heterogeneity.

🔗 Learn more: s2genomics.com/advancing-si...

#SingleCellAnalysis #OncologyResearch #TumorHeterogeneity #SingulatorPlatform
March 14, 2025 at 2:20 PM
keystonesymposia.bsky.social
Don't miss your chance to shine at Single Cell Biology! Submit your abstract for a short talk by March 11, 11:59pm MST. Seize the opportunity now: hubs.la/Q03bmfh00

#KSSingleCell25 #singlecell #singlecellbiology #singlecellanalysis #cellatlas #tissueatlas #spatialomics
March 11, 2025 at 5:37 PM
imm.ox.ac.uk
Each metal tag = one unique signal , all at single cell resolution → giving researchers incredibly detailed cellular maps.

Curious to dive deeper? 🎥 Watch the video: youtu.be/njlYmWdsElM

#MassCytometry #CyTOF #WIMMResearch #Immunology #SingleCellAnalysis 🧪🧬
Mass Cytometry
YouTube video by MRC Weatherall Institute of Molecular Medicine
youtu.be
January 12, 2026 at 10:26 AM
cytosurge.bsky.social
Our precision technology enables targeted delivery with unprecedented control, potentially unlocking agricultural and ecological breakthroughs!

Source www.cell.com/trends/micro...

#Nanotechnology #Manipulation #SingleCell #SingleCellAnalysis #Mechanobiology #SyntheticBiology #Omics #Adhesion #NGS
Is genetic manipulation of arbuscular mycorrhizal fungi possible?
Unlike many fungi, arbuscular mycorrhizal (AM) fungi have proven recalcitrant to genetic manipulation due to their obligate biotrophic lifestyle and multinucleate, coenocytic cellular structure. In th...
www.cell.com
August 12, 2025 at 6:40 AM
bgee.org
Coming to #biocuration2025? Join our workshop scFAIR: FAIRification of single-cell data www.stowers.org/events/biocu...

@SIB.mstdn.science.ap.brid.gy @marcrr.bsky.social sc-fair.org #scRNAseq #FAIR #biocuration #bgee #FAIRdata #FAIRification #scFAIR #SingleCellAnalysis
18th Annual International Biocuration Conference
Organized by Sofia Robb, Chris Seidel, and Sue Bello Hosted by the Stowers Institute for Medical Research
www.stowers.org
October 7, 2024 at 1:23 PM
alicefrolov.bsky.social
Figure title: "Epithelial-to-mesenchymal marker plasticity across the metastatic cascade"

Subtitle: "Single-cell E-cadherin vs Vimentin coordinates reveal hybrid E/M states enriched at invasion and CTC stages"

#EMT #TumorMetastasis #CancerCellPlasticity #CirculatingTumorCells #SingleCellAnalysis
Figure title: "Epithelial-to-mesenchymal marker plasticity across the metastatic cascade" Subtitle: "Single-cell E-cadherin vs Vimentin coordinates reveal hybrid E/M states enriched at invasion and CTC stages" The visualization is a hexbin-style 2D marker landscape in which each cell is positioned by its E-cadherin (x-axis) and Vimentin (y-axis) expression coordinates, with hexagonal binning encoding local cell density. The panel is faceted by cascade stage — primary tumor, local invasion, intravasation/CTC, and metastatic colonization — and each facet carries marginal density strips summarizing the univariate distribution of each marker. In the primary tumor facet, density concentrates in the E-cadherin-high/Vimentin-low quadrant, consistent with a predominantly epithelial phenotype. At the invasion and CTC stages, the landscape shifts toward the diagonal, with substantial occupancy of the intermediate quadrant where both markers are co-expressed. This bivariate co-occupancy operationalizes the hybrid E/M state, reflecting partial-EMT programs rather than a binary epithelial-to-mesenchymal switch. The colonization facet shows partial reversion toward the epithelial pole, congruent with mesenchymal-to-epithelial transition (MET) supporting secondary outgrowth. I want to emphasize that the underlying data are simulated. The intent is to illustrate a literature-grounded trend — the enrichment of hybrid E/M phenotypes at dissemination-competent stages, associated with collective migration, enhanced tumor-initiating capacity, and CTC cluster formation — rather than to report empirical measurements. Marker coordinates were sampled to reproduce reported qualitative shifts along the cascade. I would welcome critique on the choice of E-cadherin/Vimentin as the state axes versus incorporating additional determinants (ZEB1, SNAI1, GRHL2, OVOL2) or a continuous EMT-scoring metric.
September 2, 2026 at 5:00 PM
alicefrolov.bsky.social
New visualization: Senescent Fibroblast Conditioned Media Accelerates Tumor Cell Motility

#CellularSenescence #SASP #TumorMicroenvironment #CancerCellMigration #DataVisualization #Oncology #Cytokines #SingleCellAnalysis
New visualization: Senescent Fibroblast Conditioned Media Accelerates Tumor Cell Motility I am sharing a ridgeline-style figure illustrating the relationship between the senescence-associated secretory phenotype (SASP) and tumor cell migratory behavior. The figure presents single-cell migration velocity distributions of MCF-7 breast cancer cells exposed to conditioned media collected from fibroblasts at increasing days post senescence induction. Important caveat: the data shown are simulated. The distributions do not derive from a specific experimental dataset but were generated to illustrate a literature-grounded trend, namely the progressive enhancement of tumor cell motility upon exposure to maturing SASP secretomes. Each ridge corresponds to a distinct timepoint (day 0 through late senescence), with the horizontal axis representing per-cell instantaneous migration velocity and the vertical stacking encoding temporal progression. Several features are deliberately encoded to reflect established observations. First, the day 0 (pre-senescence) distribution is comparatively narrow and centered at low velocity, consistent with baseline paracrine input. Second, successive timepoints exhibit both a rightward shift in modal velocity and increasing distributional variance, reflecting heterogeneous single-cell responses to a compositionally evolving secretome. Third, the emergence of a right-skewed tail at later timepoints captures a subpopulation of hypermotile cells. Mechanistically, this trend is consistent with SASP maturation, wherein escalating secretion of IL-6, IL-8, CXCL chemokines, and MMP-mediated extracellular matrix remodeling promotes cytoskeletal reorganization and directional persistence via STAT3 and NF-kB signaling axes. The widening variance underscores the non-uniform, subclonal nature of these responses.
August 5, 2026 at 5:05 PM
alicefrolov.bsky.social
New visualization: SA-β-gal staining intensity distinguishes senescent from proliferating cells

#CellularSenescence #SABetaGal #CellBiology #Senescence #DataVisualization #Aging #SingleCellAnalysis
New visualization: SA-β-gal staining intensity distinguishes senescent from proliferating cells I am sharing a ridgeline-style visualization intended to illustrate a well-established trend in the cellular senescence literature regarding senescence-associated beta-galactosidase (SA-β-gal) activity as a function of proliferative state. I want to state explicitly at the outset that the data plotted here are simulated. They do not derive from a specific experimental dataset but are constructed to reproduce the qualitative and distributional patterns repeatedly reported across the field. The figure (subtitle: "Simulated single-cell distributions of SA-β-gal signal across four proliferative states") presents four stacked density ridges corresponding to actively proliferating, quiescent, early senescent, and deeply senescent populations. The x-axis represents per-cell SA-β-gal signal intensity, typically read out cytochemically at pH 6.0 as a proxy for lysosomal beta-galactosidase activity that accumulates with expanded lysosomal content in senescent cells. Several features merit attention. Proliferating and quiescent distributions are tightly unimodal and left-shifted, consistent with low baseline lysosomal beta-galactosidase. The early senescent ridge broadens and develops a rightward shoulder, reflecting population heterogeneity during senescence establishment. The deeply senescent distribution shifts markedly rightward and exhibits substantial variance, capturing the intercellular variability characteristic of senescent phenotypes and their partial overlap with non-senescent cells. The visualization is meant to underscore two mechanistic points frequently emphasized in peer discussion: first, that SA-β-gal is a quantitative continuum rather than a binary marker; and second, that distributional overlap warrants caution when applying single-thresholded classifications. I would encourage complementary markers such as p16INK4a, lipofuscin accumulation, and SASP.
July 24, 2026 at 5:00 PM
marketresearchnews.bsky.social
Discover how single-cell analysis is revolutionizing biomedical research!

Dive into the latest insights on how this technology is transforming our understanding of diseases.

Check it out: www.linkedin.com/pulse/unlock...

#BiomedicalResearch #SingleCellAnalysis #InnovationInHealth
Unlocking the Power of Single-Cell Analysis: Transforming Biomedical Research
The field of life sciences is undergoing a revolutionary shift with the rapid adoption of single-cell analysis (SCA) technologies. By enabling the examination of individual cells within complex tissue...
www.linkedin.com
February 14, 2025 at 6:34 AM
cnag-eu.bsky.social
🚀 New preprint out!
'Site-Specific Entry Factors Define Cellular Susceptibility to SARS-CoV-2 in Human Tissues'

➡️ Led by @vhir.bsky.social, in collaboration with our Single Cell Group Leader at CNAG, @hoheyn.bsky.social

🔗 www.biorxiv.org/content/10.6...

#SARSCoV2 #COVID19 #SingleCellAnalysis
June 1, 2026 at 7:15 AM
dr-kursat-yaykasli.bsky.social
Besides basic #RProgramming ( #tidyverse · #ggplot2 · #DESeq2 · #GEOquery · #org.Hs.eg.db · #clusterProfiler · #DoubletFinder · #EnhancedVolcano · #celldex · #pheatmap · #SingleR · #pathview) for #RNASeq · advanced packges #Seurat · #SeuratExtend · #monocle3 open new insight into #SingleCellAnalysis
November 28, 2024 at 4:10 PM
imatus.bsky.social
🧪 Paper: “Silver nanoparticles behaviour in exposed human red blood cells by single cell–inductively coupled plasma–mass spectrometry”.

🤝 Collaboration: iMATUS & IPREM.

🔗 www.sciencedirect.com/science/arti...

#Nanoscience #Nanomaterials #ICPMS #SingleCellAnalysis #Toxicology
Silver nanoparticles behaviour in exposed human red blood cells by single cell–inductively coupled plasma–mass spectrometry
Research concerning nanoparticles, NPs, at the single cell level is at the forefront of recent investigations. With the widespread use of silver nanop…
www.sciencedirect.com
November 7, 2025 at 9:56 AM
cynthiasc.bsky.social
#LIBD #SingleCellAnalysis #RNASeq #Bioinformatics #SpatialData
November 16, 2024 at 7:16 PM
arralyze.bsky.social
Missed our webinar on accelerating cell line development?

You can now watch it on demand. Learn how to identify fast-growing single-cell clones in just three days using live cell imaging and AI-assisted tracking.

Watch here: zurl.co/1dE3w

#CellLineDevelopment #SingleCellAnalysis
Identify Fast-Growing Cells Early to Speed Up Cell Line...
Discover how to accelerate cell line development by enabling early identification of fast-growing single-cell clones, reducing development timelines from...
events.bitesizebio.com
December 6, 2025 at 3:13 PM
labelreads.bsky.social
#AutismResearch #SingleCellAnalysis
Single-cell analysis of dup15q syndrome reveals developmental and postnatal molecular changes in autism - Nature
Single-cell analysis of dup15q syndrome reveals developmental and postnatal molecular changes in autism  Nature
dlvr.it
August 11, 2025 at 3:38 PM
jobburt.bsky.social
Bernard Delanghe of Thermo Fisher Scientific presented his work using the Orbitrap Astral for single-cell analysis. Achieving >4,500 protein groups and >14,000 unique peptides from a mere 1 ng standard HeLa digest load, he's pushing the boundaries of what we thought was possible. #SingleCellAnalysis
June 6, 2023 at 5:24 AM
dataprudence.bsky.social
Single-cell data is rich, complex, and powerful. Visualizing it should be equally intelligent. Partner with DataPrudence for custom visualizations that do justice to your data.

#singlecellanalysis #datavisualization #bioinformatics #datavisualization
July 15, 2025 at 5:40 AM
imm.ox.ac.uk
Each metal tag = one unique signal , all at single cell resolution → giving researchers incredibly detailed cellular maps.

Watch our video to learn more: youtu.be/njlYmWdsElM

#CyTOF #WIMMResearch #Immunology #SingleCellAnalysis
Mass Cytometry
YouTube video by MRC Weatherall Institute of Molecular Medicine
youtu.be
January 12, 2026 at 10:23 AM