#proteinfunction
CAFA-evaluator: A Python Tool for Benchmarking Ontological Classification Methods
#ontologies #bioinformatics #python #ProteinFunction

arxiv.org/abs/2310.06881
December 3, 2023 at 12:29 AM
@biodataganache.bsky.social is now up. VaLPAS: Leveraging variation in experimental multi-omics data to elucidate protein function. #ismbeccb2025 #ProteinFunction #bioinformatics
July 22, 2025 at 3:01 PM
DEADLINE EXTENDED: The new deadline for submission of manuscripts for this special issue is 31 January 2025.

📝 Call for Papers: Special Issue on "AlphaFold in Protein Structure and Function Prediction".

🔗https://www.csbj.org/call_AlphaFold

#AlphaFold #ProteinStructure #ProteinFunction
December 7, 2024 at 8:51 AM
6/6 StarFunc demonstrates that deep learning and template-based approaches are complementary, not competing, strategies for protein function annotation.

Read the article in #GPB:
🔗 doi.org/10.1093/gpbj...

#Bioinformatics #Proteomics #DeepLearning #ProteinFunction
Validate User
doi.org
September 14, 2026 at 8:07 PM
Now up: Semi-Supervised Data-Integrated Feature Importance Enhances Performance and Interpretability of Biological Classification Tasks
Jun Kim &
@rbaltman.bsky.social

#ProteinFunction #ismbeccb25 #bioinformatics
July 22, 2025 at 1:24 PM
4/4
What’s coming:
→ More protein functions
→ Sharper ML strategies
→ Public data access portal
→ And yes—we’re hiring.
🔗 alignbio.org/careers
#openbiology #machinelearning #proteinfunction #bioengineering
Careers — Align to Innovate
alignbio.org
July 21, 2025 at 2:59 PM
Solving the gene classification problem with a novel Gene Space approach
doi.org/10.1101/2025...

KIPEs3: Automatic annotation of biosynthesis pathways
doi.org/10.1101/2022...

#Bioinformatics #ProteinFunction
Solving the gene classification problem with a novel Gene Space approach
Genomic organization and its comparative analysis throughout all major kingdoms of life are extensively studied across multiple scales, ranging from individual gene-level analyses to system-wide inves...
doi.org
October 19, 2025 at 6:56 AM
TRF2 Protein Critical for Muscle Repair and Regeneration

🤖 IA: It's clickbait ⚠️
👥 Users: It's clickbait ⚠️

#musclerepair #proteinfunction #diseasetreatment

View full AI summary:
TRF2 Protein Critical for Muscle Repair and Regeneration
A study published in Science Advances reveals that the TRF2 protein plays a vital role beyond its traditional function of protecting chromosome ends. Researchers at the University of Pennsylvania found that TRF, which is essential for maintaining muscle stem cell identity, coordinates the regeneration process after injury. When TRF2 was removed from laboratory mice, their muscle stem cells lost functional characteristics, leading to fat and scar tissue accumulation in damaged areas. This discovery could advance treatments for muscular dystrophy and provide insights into cancer biology. The study also showed that TRF2 interacts with genomic regions containing G-quadruplexes, which are being explored as potential cancer targets. Additionally, mice lacking TRF2 in a Duchenne muscular dystrophy model experienced accelerated disease progression and shorter lifespans. These findings highlight the dual role of TRF2 in preserving muscle stem cell function while offering new avenues for regenerative medicine and understanding tissue-specific biological mechanisms.
en.killbait.com
August 3, 2026 at 4:36 AM
These ontology-aware metrics are complementary to CAFA-style protein-level accuracy.

Paper: https://doi.org/10.1093/bib/bbag336
Code/data: https://github.com/bio-ontology-research-group/GAEF

#CAFA #FunctionCOSI #ISMB2026 #ProteinFunction
6/6
June 30, 2026 at 6:02 PM